Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004494

Physical Location & Seq

Genomic Coordinates Reverse (-)

55076280 .. 55082721

Gene Structure 6442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0407900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2589 bp

ATGGAGGCAATGTTACGGTGTACTCCATGTCTCGCTCTCAGATTCGGCTCTAAGCTGCGACTCGCCGTCGTTGTCCTCGAGATTGTATTGCTATTTACATGGTTGGAAGCTACTAATGCACAATCTCAAGAGATCATACTGGGAGGGCAAGGCCCGGAGAGGTCGTCAGAGAACATTGTTTCTCACTCCTGCATCCATGACCAGATACTCAAACAACGAAGGCGACCTGGTCGCAAGGTGTACACTGTTACTCCACAGGTGTATGAGGCTTCTGGTATCTCAAAACCCCTTCACCAAAAGGGTAGGGCATTGCTTGGAATTTCAAAGCAGTCTGTACAGCAGAAGGATGCAAAACTGCCCATTAGAATTTTTCTAAATTATGATGCTGTTGGTCACTCGCCTGATAGGGACTGTCGGAATGTCGGGGATATTGTGAAGCTTGGTGAGCCTCCTATTGGTTATCTTTCTGGCTCTCCTTCCTGTAATCCTCATGGGGATCCTCCAGTTTCTGGTGACTGCTGGTATAACTGCACTTTGGACGATATAGCTGGGAAGGACAAAAGGCAACGCCTTAGAAAGGCTCTAGGACAGACAGCAGACTGGTTCAGGAGAGCCTTAGCTGTTGAACCTGTGAGAGGGAACTTGCGGTTGAGTGGATATTCAGCATGCGGTCAAGATGGGGGCGTACAGCTGCCACGTGAATATGTTGAAGAGGGTGTTGCTGAAGCAGACCTCGTTCTACTGGTTACAACAAGACCTACCACCGGTAATACCCTTGCATGGGCAGTGGCTTGTGAACGTGATCAATGGGGTCGTGCGATTGCAGGACATGTAAATGTTGCTCCTCGTCATTTGACAGCTGAAGCAGAAACTTTGCTTTCTGCTACTCTAATACATGAGGTCATGCATGTTCTTGGTTTTGATCCCCATGCCTTTGCTCATTTTAGGGATGAGAGGAAAAGACGGCGTAGTCAGGTTACAGAACAAGTCATGGATGAAAAGCTTGGGCGGATGGTAACCCGTGTGGTGCTTCCACGGGTTGTCATGCATTCACGATATCATTATGCGGCATTCTCTGAGAATTTTACTGGTTTAGAGCTAGAAGATGGGGGAGGGCGTGGCACATCAGGGTCACACTGGGAAAAAAGACTTCTAATGAATGAAATTATGACGGGTTCAGTGGATACAAGATCCGTGGTTTCAAAAATGACACTGGCCTTATTAGAAGATAGTGGATGGTACCATGCTAATTATAGTATGGCAGACAATCTTGATTGGGGTCGCAACCAAGGAACTGAGTTTGTTACTTCCCCTTGCAACGTCTGGAAAGGGGCATATCATTGCAACACAACACAATTGTCAGGATGTACGTACAACAGAGAAGCAGAGGGGTACTGTCCAATTGTAAGTTACAGTGGGGACCTGCCCCAGTGGGCACGCTATTTTCCACAGGCTAACAAAGGTGGACAGTCTTCGCTGGCTGATTATTGCACCTATTTCGTAGCTTACTCTGATGGATCATGTACAGACACTAACAGTGCACGACCACCTGACAGAATGTTGGGTGAAGTACGAGGGAGCAACTCTAGGTGTATGGCCTCATCATTAGTGCGTTCTGGGTTTGTGAGGGGTTCTATGACCCAAGGAAATGGATGTTATCAGCACAGATGTGTCAACAACTCGTTAGAGGTTGCTGTGGATGGGATGTGGAAAGTATGTCCTGAAGCTGGTGGACAAATTCAGTTCCCAGGATTTAATGGTGAATTGATATGCCCGGCATACCATGAACTCTGTGGTACTGGGATAGTTCCCGCGACAGGGCAATGTCCAAATTCTTGTAATTTGAATGGCGACTGTGTTGAAGGAAGATGCCACTGTTTTCTAGGGTTCCATGGTTCTGATTGTAGCAAACGCTCCTGTCCCAGCAACTGTAGCGGACGTGGAAACTGCCTATCTAACGGGATATGTGAATGTAGAAATGGGTACACTGGCATTGATTGCTCCACTGCTGTCTGTGATGAGCAATGCAGCCTTCATGGAGGTGTCTGTGATGATGGAGTGTGTGAATTCCGCTGCTCTGACTACGCAGGCTACTCATGCCAGAACAGCACAATGCTTCATTCTAGTCTTAACGTTTGCAAAGATGTGCTAGAGAATGTCAAGTCTGGTGCTGGTCAGCACTGTGCCCCCAGTGAACCAAGTATACTGCAGCAGCTAGAGGATGTAGTTGTGATGCCCAACTACCACCGTTTGTTCCCTGGTGGTGCCAGGAAACTCTTTAGCATCTTTGGCACCAGCTATTGTGATATGACTGCGAAGCAGCTGGCTTGCTGGATCTCAATTCAAAAGTGTGACAAGGATGGGGACAACAGGCTGCGGGTATGCTATTCGGCTTGTCAATCATATAATTCAGCATGTGGAGCTTCACTTGATTGCTCGGACCAAACCCTGTTCAGCAGCAAGGATGAAGTAGAGGGTCAATGCACTGGGTCTAGTGAGATGAAAACATCGTGGGCTAGCAGCCTACTTAGTTGGTTTTCAAGTAATGATTCCTCCAGAGGAATGTCTGTAAAAAATAGGCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000731 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008622 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0018130 GO:0019438 GO:0019899 GO:0019985 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051781 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070182 GO:0071704 GO:0071897 GO:0090304 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

DNA_pol_E_B Dpoe2NT

Protein Analysis

862

Amino Acids

94.48

Weight (kDa)

6.66

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M8	PF01457	175 - 599	1.6e-81	Leishmanolysin
EGF_TEN	PF25024	611 - 815	1.1e-10	Teneurin EGF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22110 AT5G22110
fragaria_vesca	FvH4_5g17980
malus_domestica	MD06G1235400.v1.1 MD14G1242400.v1.1
prunus_persica	Prupe.5G240100_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1
pyrus_communis	pycom06g21030 pycom14g12970 pycom14g20380
rosa_chinensis	RchiOBHm_Chr7g0177621
rosa_laevigata	RLG00000005519 RLG00000005520
rosa_multiflora	Rmu_ssc0000330.1_g000015
rosa_roxburghii	Rroxscaffold_3G00275720
rosa_rugosa	Rorug06G0407900 Rorug06G0408000
rosa_samantha	Rh7AG007200 Rh7AG007300 Rh7BG007200 Rh7BG007300 Rh7CG007700 Rh7CG007800 Rh7DG007400 Rh7DG007500
rosa_wichuraiana	Rw7G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	969
Acc36I	ACCTGC	1 cut(s)	1431
Acc65I	GGTACC	1 cut(s)	1239
AccB1I	GGYRCC	3 cut(s)	1239, 2264, 2291
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	2203
AccII	CGCG	1 cut(s)	1814
AciI	CCGC	8 cut(s)	646, 669, 1009, 1067, 1812, 1935, 2071, 2377
AclI	AACGTT	1 cut(s)	2133
AclWI	GGATC	6 cut(s)	491, 504, 917, 1185, 1525, 2342
AcsI	RAATTY	6 cut(s)	318, 366, 1081, 1737, 1831, 2066
AcuI	CTGAAG	3 cut(s)	744, 882, 1743
AcvI	CACGTG	1 cut(s)	698
AflIII	ACRYGT	1 cut(s)	829
AgeI	ACCGGT	1 cut(s)	764
AgsI	TTSAA	8 cut(s)	324, 626, 710, 1203, 1846, 1862, 2345, 2541
AhdI	GACNNNNNGTC	1 cut(s)	65
AjiI	CACGTC	1 cut(s)	1940
AjnI	CCWGG	4 cut(s)	226, 1747, 2257, 2267
AleI	CACNNNNGTG	1 cut(s)	1668
Alw21I	GWGCWC	1 cut(s)	1543
Alw26I	GTCTC	1 cut(s)	35
Alw44I	GTGCAC	1 cut(s)	1539
AlwI	GGATC	6 cut(s)	491, 504, 917, 1185, 1525, 2342
AlwNI	CAGNNNCTG	2 cut(s)	509, 1929
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	3 cut(s)	151, 1215, 1596
ApaLI	GTGCAC	1 cut(s)	1539
ApoI	RAATTY	6 cut(s)	318, 366, 1081, 1737, 1831, 2066
AsiGI	ACCGGT	1 cut(s)	764
Asp718I	GGTACC	1 cut(s)	1239
AspS9I	GGNCC	3 cut(s)	152, 1420, 2440
AsuC2I	CCSGG	2 cut(s)	155, 1775
AsuHPI	GGTGA	5 cut(s)	284, 455, 524, 1577, 1772
AsuNHI	GCTAGC	1 cut(s)	2516
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	1420, 2440
BaeGI	GKGCMC	3 cut(s)	1438, 1543, 2188
BamHI	GGATCC	1 cut(s)	496
BanI	GGYRCC	3 cut(s)	1239, 2264, 2291
BbrPI	CACGTG	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	1464
Bbv12I	GWGCWC	1 cut(s)	1543
BccI	CCATC	8 cut(s)	671, 1006, 1100, 1230, 1508, 1694, 2048, 2354
BceAI	ACGGC	2 cut(s)	50, 980
BcgI	CGANNNNNNTGC	2 cut(s)	1480, 1514
BciT130I	CCWGG	4 cut(s)	228, 1749, 2259, 2269
BciVI	GTATCC	1 cut(s)	1177
BclI	TGATCA	1 cut(s)	802
BcnI	CCSGG	2 cut(s)	155, 1775
BcoDI	GTCTC	1 cut(s)	35
BfmI	CTRYAG	2 cut(s)	1930, 2207
BfuAI	ACCTGC	1 cut(s)	1431
BfuI	GTATCC	1 cut(s)	1177
Bme1390I	CCNGG	6 cut(s)	155, 228, 1749, 1775, 2259, 2269
Bme18I	GGWCC	2 cut(s)	1420, 2440
BmeRI	GACNNNNNGTC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	77
BmgBI	CACGTC	1 cut(s)	1940
BmgT120I	GGNCC	3 cut(s)	152, 1420, 2440
BmiI	GGNNCC	6 cut(s)	498, 1241, 1421, 1889, 2266, 2293
BmrFI	CCNGG	6 cut(s)	155, 228, 1749, 1775, 2259, 2269
BmrI	ACTGGG	6 cut(s)	149, 1147, 1423, 1809, 2184, 2496
BmsI	GCATC	6 cut(s)	201, 337, 373, 1859, 2223, 2292
BmtI	GCTAGC	1 cut(s)	2520
BmuI	ACTGGG	6 cut(s)	149, 1147, 1423, 1809, 2184, 2496
BpiI	GAAGAC	1 cut(s)	1464
BpmI	CTGGAG	2 cut(s)	486, 2539
Bpu10I	CCTNAGC	1 cut(s)	616
BpuEI	CTTGAG	1 cut(s)	111
BpuMI	CCSGG	2 cut(s)	155, 1775
BsaAI	YACGTR	2 cut(s)	698, 1371
BsaJI	CCNNGG	7 cut(s)	1034, 1194, 1288, 1642, 1747, 1891, 2257
BsaWI	WCCGGW	1 cut(s)	764
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 149, 179, 235, 265
Bse118I	RCCGGY	1 cut(s)	764
Bse3DI	GCAATG	5 cut(s)	15, 308, 1339, 1829, 2030
BseBI	CCWGG	4 cut(s)	228, 1749, 2259, 2269
BseDI	CCNNGG	7 cut(s)	1034, 1194, 1288, 1642, 1747, 1891, 2257
BseMI	GCAATG	5 cut(s)	15, 308, 1339, 1829, 2030
BseMII	CTCAG	3 cut(s)	52, 1068, 1287
BseRI	GAGGAG	1 cut(s)	834
BseSI	GKGCMC	3 cut(s)	1438, 1543, 2188
BseYI	CCCAGC	2 cut(s)	548, 1922
BsgI	GTGCAG	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	1814
BshFI	GGCC	3 cut(s)	153, 1217, 1598
BshNI	GGYRCC	3 cut(s)	1239, 2264, 2291
BshTI	ACCGGT	1 cut(s)	764
BsiHKAI	GWGCWC	1 cut(s)	1543
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	155, 765, 1775
BslFI	GGGAC	4 cut(s)	422, 1433, 1905, 2378
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	4 cut(s)	422, 1433, 1905, 2378
BsmI	GAATGC	2 cut(s)	1048, 1070
BsnI	GGCC	3 cut(s)	153, 1217, 1598
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	3 cut(s)	1438, 1543, 2188
Bsp1407I	TGTACA	3 cut(s)	240, 334, 1523
Bsp143I	GATC	7 cut(s)	132, 496, 802, 922, 1190, 1517, 2334
Bsp19I	CCATGG	1 cut(s)	1891
BspACI	CCGC	8 cut(s)	646, 669, 1009, 1067, 1812, 1935, 2071, 2377
BspANI	GGCC	3 cut(s)	153, 1217, 1598
BspCNI	CTCAG	3 cut(s)	51, 1069, 1288
BspFNI	CGCG	1 cut(s)	1814
BspLI	GGNNCC	6 cut(s)	498, 1241, 1421, 1889, 2266, 2293
BspMAI	CTGCAG	1 cut(s)	2211
BspMI	ACCTGC	1 cut(s)	1431
BspOI	GCTAGC	1 cut(s)	2520
BspPI	GGATC	6 cut(s)	491, 504, 917, 1185, 1525, 2342
BspT107I	GGYRCC	3 cut(s)	1239, 2264, 2291
BsrDI	GCAATG	5 cut(s)	15, 308, 1339, 1829, 2030
BsrFI	RCCGGY	1 cut(s)	764
BsrGI	TGTACA	3 cut(s)	240, 334, 1523
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	7 cut(s)	1034, 1194, 1288, 1642, 1747, 1891, 2257
BssMI	GATC	7 cut(s)	132, 496, 802, 922, 1190, 1517, 2334
BssNAI	GTATAC	1 cut(s)	2204
BssT1I	CCWWGG	3 cut(s)	1288, 1642, 1891
Bst1107I	GTATAC	1 cut(s)	2204
Bst2UI	CCWGG	4 cut(s)	228, 1749, 2259, 2269
Bst6I	CTCTTC	1 cut(s)	705
BstAPI	GCANNNNNTGC	1 cut(s)	1998
BstAUI	TGTACA	3 cut(s)	240, 334, 1523
BstBAI	YACGTR	2 cut(s)	698, 1371
BstC8I	GCNNGC	7 cut(s)	667, 1438, 1479, 2089, 2325, 2329, 2518
BstDEI	CTNAG	7 cut(s)	38, 51, 572, 616, 1077, 1296, 2528
BstDSI	CCRYGG	3 cut(s)	1034, 1194, 1891
BstEII	GGTNACC	1 cut(s)	1015
BstENI	CCTNNNNNAGG	2 cut(s)	575, 633
BstFNI	CGCG	1 cut(s)	1814
BstKTI	GATC	7 cut(s)	135, 499, 805, 925, 1193, 1520, 2337
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	7 cut(s)	132, 496, 802, 922, 1190, 1517, 2334
BstMWI	GCNNNNNNNGC	8 cut(s)	116, 445, 1932, 1998, 2097, 2106, 2289, 2420
BstNI	CCWGG	4 cut(s)	228, 1749, 2259, 2269
BstNSI	RCATGY	4 cut(s)	669, 833, 911, 2418
BstPI	GGTNACC	1 cut(s)	1015
BstSCI	CCNGG	6 cut(s)	153, 226, 1747, 1773, 2257, 2267
BstSFI	CTRYAG	2 cut(s)	1930, 2207
BstSLI	GKGCMC	3 cut(s)	1438, 1543, 2188
BstSNI	TACGTA	1 cut(s)	1371
BstUI	CGCG	1 cut(s)	1814
BstV2I	GAAGAC	1 cut(s)	1464
BstX2I	RGATCY	3 cut(s)	496, 1190, 2334
BstXI	CCANNNNNNTGG	1 cut(s)	1649
BstYI	RGATCY	3 cut(s)	496, 1190, 2334
BstZ17I	GTATAC	1 cut(s)	2204
BsuI	GTATCC	1 cut(s)	1177
BsuRI	GGCC	3 cut(s)	153, 1217, 1598
BtgI	CCRYGG	3 cut(s)	1034, 1194, 1891
BtrI	CACGTC	1 cut(s)	1940
BtsI	GCAGTG	2 cut(s)	792, 2004
BveI	ACCTGC	1 cut(s)	1431
Cac8I	GCNNGC	7 cut(s)	667, 1438, 1479, 2089, 2325, 2329, 2518
CaiI	CAGNNNCTG	2 cut(s)	509, 1929
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	3 cut(s)	152, 1420, 2440
CsiI	ACCWGGT	1 cut(s)	226
CspAI	ACCGGT	1 cut(s)	764
CspCI	CAANNNNNGTGG	2 cut(s)	1176, 1211
DdeI	CTNAG	7 cut(s)	38, 51, 572, 616, 1077, 1296, 2528
DpnI	GATC	7 cut(s)	134, 498, 804, 924, 1192, 1519, 2336
DpnII	GATC	7 cut(s)	132, 496, 802, 922, 1190, 1517, 2334
DrdI	GACNNNNNNGTC	1 cut(s)	969
DriI	GACNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	969
Eam1104I	CTCTTC	1 cut(s)	705
Eam1105I	GACNNNNNGTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	705
EciI	GGCGGA	1 cut(s)	1024
Eco105I	TACGTA	1 cut(s)	1371
Eco130I	CCWWGG	3 cut(s)	1288, 1642, 1891
Eco32I	GATATC	1 cut(s)	1058
Eco47I	GGWCC	2 cut(s)	1420, 2440
Eco57I	CTGAAG	3 cut(s)	744, 882, 1743
Eco72I	CACGTG	1 cut(s)	698
Eco88I	CYCGRG	1 cut(s)	77
Eco91I	GGTNACC	1 cut(s)	1015
EcoNI	CCTNNNNNAGG	2 cut(s)	575, 633
EcoO109I	RGGNCCY	1 cut(s)	1420
EcoO65I	GGTNACC	1 cut(s)	1015
EcoRI	GAATTC	1 cut(s)	2066
EcoRII	CCWGG	4 cut(s)	226, 1747, 2257, 2267
EcoRV	GATATC	1 cut(s)	1058
EcoT14I	CCWWGG	3 cut(s)	1288, 1642, 1891
EcoT22I	ATGCAT	2 cut(s)	909, 1050
ErhI	CCWWGG	3 cut(s)	1288, 1642, 1891
FaqI	GGGAC	4 cut(s)	422, 1433, 1905, 2378
FauI	CCCGC	2 cut(s)	1819, 2370
FbaI	TGATCA	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	2203
GsaI	CCCAGC	2 cut(s)	552, 1926
GsuI	CTGGAG	2 cut(s)	486, 2539
HaeIII	GGCC	3 cut(s)	153, 1217, 1598
HapII	CCGG	3 cut(s)	155, 765, 1775
HincII	GTYRAC	1 cut(s)	1675
HindII	GTYRAC	1 cut(s)	1675
HindIII	AAGCTT	2 cut(s)	437, 1001
HinfI	GANTC	3 cut(s)	42, 60, 2549
HpaII	CCGG	3 cut(s)	155, 765, 1775
HphI	GGTGA	5 cut(s)	284, 455, 524, 1577, 1772
Hpy188I	TCNGA	8 cut(s)	41, 169, 417, 1078, 1513, 1900, 2080, 2440
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	7 cut(s)	213, 299, 337, 486, 547, 1856, 2042
HpyCH4IV	ACGT	6 cut(s)	697, 799, 1320, 1370, 1939, 2133
HpyF10VI	GCNNNNNNNGC	8 cut(s)	116, 445, 1932, 1998, 2097, 2106, 2289, 2420
HpyF3I	CTNAG	7 cut(s)	38, 51, 572, 616, 1077, 1296, 2528
HpySE526I	ACGT	6 cut(s)	697, 799, 1320, 1370, 1939, 2133
KpnI	GGTACC	1 cut(s)	1243
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	7 cut(s)	132, 496, 802, 922, 1190, 1517, 2334
LmnI	GCTCC	5 cut(s)	847, 1578, 1919, 2006, 2420
LweI	GCATC	6 cut(s)	201, 337, 373, 1859, 2223, 2292
MabI	ACCWGGT	1 cut(s)	226
MaeII	ACGT	6 cut(s)	697, 799, 1320, 1370, 1939, 2133
MalI	GATC	7 cut(s)	134, 498, 804, 924, 1192, 1519, 2336
MboI	GATC	7 cut(s)	132, 496, 802, 922, 1190, 1517, 2334
MboII	GAAGA	5 cut(s)	722, 1115, 1238, 1464, 1878
MfeI	CAATTG	2 cut(s)	1355, 1401
MflI	RGATCY	3 cut(s)	496, 1190, 2334
MhlI	GDGCHC	3 cut(s)	1438, 1543, 2188
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	2 cut(s)	84, 395
Mph1103I	ATGCAT	2 cut(s)	909, 1050
MseI	TTAA	2 cut(s)	1755, 2130
MslI	CAYNNNNRTG	3 cut(s)	834, 1668, 2040
MspA1I	CMGCKG	4 cut(s)	691, 860, 2073, 2323
MspI	CCGG	3 cut(s)	155, 765, 1775
MspR9I	CCNGG	6 cut(s)	155, 228, 1749, 1775, 2259, 2269
MunI	CAATTG	2 cut(s)	1355, 1401
Mva1269I	GAATGC	2 cut(s)	1048, 1070
MvaI	CCWGG	4 cut(s)	228, 1749, 2259, 2269
MvnI	CGCG	1 cut(s)	1814
MwoI	GCNNNNNNNGC	8 cut(s)	116, 445, 1932, 1998, 2097, 2106, 2289, 2420
NciI	CCSGG	2 cut(s)	155, 1775
NcoI	CCATGG	1 cut(s)	1891
NdeII	GATC	7 cut(s)	132, 496, 802, 922, 1190, 1517, 2334
NheI	GCTAGC	1 cut(s)	2516
NlaIV	GGNNCC	6 cut(s)	498, 1241, 1421, 1889, 2266, 2293
NmuCI	GTSAC	4 cut(s)	392, 512, 1131, 2351
NsiI	ATGCAT	2 cut(s)	909, 1050
NspI	RCATGY	4 cut(s)	669, 833, 911, 2418
OliI	CACNNNNGTG	1 cut(s)	1668
PaeI	GCATGC	1 cut(s)	669
PaeR7I	CTCGAG	1 cut(s)	77
PciI	ACATGT	1 cut(s)	829
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	2 cut(s)	1048, 1070
PfeI	GAWTC	2 cut(s)	42, 2549
PflFI	GACNNNGTC	1 cut(s)	228
PflMI	CCANNNNNTGG	1 cut(s)	509
PinAI	ACCGGT	1 cut(s)	764
PleI	GAGTC	1 cut(s)	54
PmaCI	CACGTG	1 cut(s)	698
PmlI	CACGTG	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	54
Ppu21I	YACGTR	2 cut(s)	698, 1371
PpuMI	RGGWCCY	1 cut(s)	1420
PscI	ACATGT	1 cut(s)	829
Psp1406I	AACGTT	1 cut(s)	2133
Psp5II	RGGWCCY	1 cut(s)	1420
Psp6I	CCWGG	4 cut(s)	226, 1747, 2257, 2267
PspCI	CACGTG	1 cut(s)	698
PspEI	GGTNACC	1 cut(s)	1015
PspFI	CCCAGC	2 cut(s)	548, 1922
PspGI	CCWGG	4 cut(s)	226, 1747, 2257, 2267
PspN4I	GGNNCC	6 cut(s)	498, 1241, 1421, 1889, 2266, 2293
PspPI	GGNCC	3 cut(s)	152, 1420, 2440
PspPPI	RGGWCCY	1 cut(s)	1420
PsrI	GAACNNNNNNTAC	2 cut(s)	2187, 2219
PstI	CTGCAG	1 cut(s)	2211
PstNI	CAGNNNCTG	2 cut(s)	509, 1929
PsuI	RGATCY	3 cut(s)	496, 1190, 2334
PsyI	GACNNNGTC	1 cut(s)	228
PvuII	CAGCTG	3 cut(s)	691, 860, 2323
RseI	CAYNNNNRTG	3 cut(s)	834, 1668, 2040
SaqAI	TTAA	2 cut(s)	1755, 2130
Sau3AI	GATC	7 cut(s)	132, 496, 802, 922, 1190, 1517, 2334
Sau96I	GGNCC	3 cut(s)	152, 1420, 2440
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	6 cut(s)	155, 228, 1749, 1775, 2259, 2269
SduI	GDGCHC	3 cut(s)	1438, 1543, 2188
SexAI	ACCWGGT	1 cut(s)	226
SfaNI	GCATC	6 cut(s)	201, 337, 373, 1859, 2223, 2292
SfcI	CTRYAG	2 cut(s)	1930, 2207
Sfr274I	CTCGAG	1 cut(s)	77
SinI	GGWCC	2 cut(s)	1420, 2440
SlaI	CTCGAG	1 cut(s)	77
SmiMI	CAYNNNNRTG	3 cut(s)	834, 1668, 2040
SmlI	CTYRAG	2 cut(s)	77, 126
SmoI	CTYRAG	2 cut(s)	77, 126
SnaBI	TACGTA	1 cut(s)	1371
SphI	GCATGC	1 cut(s)	669
SsiI	CCGC	8 cut(s)	646, 669, 1009, 1067, 1812, 1935, 2071, 2377
StyD4I	CCNGG	6 cut(s)	153, 226, 1747, 1773, 2257, 2267
StyI	CCWWGG	3 cut(s)	1288, 1642, 1891
TaiI	ACGT	6 cut(s)	700, 802, 1323, 1373, 1942, 2136
TaqI	TCGA	1 cut(s)	78
TatI	WGTACW	4 cut(s)	20, 240, 334, 1523
TauI	GCSGC	1 cut(s)	1070
TfiI	GAWTC	2 cut(s)	42, 2549
Tru1I	TTAA	2 cut(s)	1755, 2130
Tru9I	TTAA	2 cut(s)	1755, 2130
TseFI	GTSAC	4 cut(s)	392, 512, 1131, 2351
Tsp45I	GTSAC	4 cut(s)	392, 512, 1131, 2351
TspDTI	ATGAA	8 cut(s)	1011, 1172, 1176, 1800, 2024, 2108, 2481, 2516
TspGWI	ACGGA	1 cut(s)	1183
Tth111I	GACNNNGTC	1 cut(s)	228
Van91I	CCANNNNNTGG	1 cut(s)	509
VneI	GTGCAC	1 cut(s)	1539
VpaK11BI	GGWCC	2 cut(s)	1420, 2440
XagI	CCTNNNNNAGG	2 cut(s)	575, 633
XapI	RAATTY	6 cut(s)	318, 366, 1081, 1737, 1831, 2066
XceI	RCATGY	4 cut(s)	669, 833, 911, 2418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1790
XhoI	CTCGAG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	2203
Zsp2I	ATGCAT	2 cut(s)	909, 1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.