Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004494

Physical Location & Seq

Genomic Coordinates Reverse (-)

67069653 .. 67080197

Gene Structure 10545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1869 bp

ATGGTGATCTCGACGACCGCCGGTGATCGTGCAGATCACTTTCTGGACTGTACCTTTGCTTCCAGATATGTGCGCAATCCCGTCCCCAAGTTCATGATGCCGGCGACCTCACAACCCAAAGAAGCAGCTTATCAGATAATAAGCGATGAGCTTATGCTGGATGGGGCTCCAAGACTCAACTTGGCCTCATTCGTGACCACCTGGATGGAGCCGGAATGCGATAAACTCATGATGGCCTCTATGAACAAAAACTACGTTGACATGGATGAGTACCCTGTCACCACTGAACTTCAGATTACAGCATCCACCCAAAAGCAGATTACGTGGGGACATAAATTACAATTCTTATTAACCCTCATGATAAAGCTTTTAAAAGAAAGGTTATCTCTGTGTGCCCATTTGATGAGTAAAGAGGACTTGCCCGACGAGCTTCATGCTTTGTTAACAAGTCTTCAACTTAATTCTGTTATAAACTTTAGCAAGATTGTTCTCGCTTCTGCTACAGTTCACCGACTCAAGGACACAACTCTCGACCGAGCTGGTGTACCATTGACTACTGATTTGGTTGTTCAGAGGCATAACAAGAGATGCCGAACTGATTTACTTATAATTTGGAAGATGCGTGCTGACACCGCCAAGATTTTCTACAAGCCTAGTGAGATCCGGCCGCCGATTCATGGAAATGCCTCCGCGAAAGCGGCTCTGTATAAGGATAGGTTTCTCTTGATCTCCCAGAGGCTCTCTCGCCATCAGCATTTTGCCAAACGAGCCTTTGATTCTGAAGTGTCCGATTTCGGAAGCTGTGAGATATCTCAAATTCAGTCTCTTGTTGGACAAACTGGAAGGAGATGGGTGATGGGTTTGATATCACAGTTGGAAGATGGTCATTTTTACCTGGAAGACCTTACCGCGTCAATAACTACAGGATTCTTTACAGAGAACACAATGGTTGTTGCAGAAGGCGAGATGCTTTTAGAAGGTGTTTTTCAGGTTATTACTTGTGGATTTCCTCCATTAGAGGACAGAGACATGTCAGTCAAATTGCTTGCAGGACATGACTTCTTTGGTGGTGGTATACTAACAAAAGAAGAGACACTCAGACTTTCAGAATTGGAAAAGAGAGCAGTTAATGACATGTTTGTCATACTATCTGACATTTGGCTGGACAGTGAAGAGGCTATGGGAAAGCTAGAGAGGATCCTTGATGGTTACGAGAACCAGGAAGTGGTACCTTCCTTATTTGTGTTTATGGGAAATTTTAGTTCTCACCCTTGCAACCTTTCCTTCCGCCCCTCTAGTCTCAGGTTGCAGTTTGACAAGCTAGGACAAATGATTGCAGCCCATCAACAGCTAACAAAGCGTAGTCGTTTTCTGTTTATCCCAGGTCCTGATGACCCAGGTCCTTCAAAAGTTCTACCCAGATGTGCTTTACCAAAATATATAGCAGAAGAGCTTCAAAAACACATACCAAATGCCATGTTTTCAAGTAATCCTTGCAGAATAAAGTTCTATACCCAAGAGCTTGTATTTTTTCGTCAGGATTTACTGTACAGAATGCGCCGTTCGTGCCTGATCCCCCCTTCTACAGAAGAAACTGATGATCCCTTTGAGCATCTTGTTGCTACAATAACCCATCAAAGCCATCTATGCCCACTCCCTCTTATTGTACAACCCATTATCTGGAATTATGATCACTCACTCTATCTCTATCCAACTCCACATACGATAGTTTTGGGTGACAGAAGTGAGCAGAAGGCTTTCAAATACACAGGAATCACTTGTTTTAATCCTGGTTCCTTCTCAAGAGAGGGCACATTTGTGGCATATTATCCTTGTACTCAGGAAGTTGAATTAAAGTTATTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000731 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008622 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0018130 GO:0019438 GO:0019899 GO:0019985 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051781 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070182 GO:0071704 GO:0071897 GO:0090304 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

DNA_pol_E_B Dpoe2NT

Protein Analysis

622

Amino Acids

70.86

Weight (kDa)

6.12

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyridoxal_deC	PF00282	37 - 100	4e-08	Pyridoxal-dependent decarboxylase conserved domain
DNA_pol_E_B	PF04042	380 - 584	2.5e-49	DNA polymerase alpha/epsilon subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22110 AT5G22110
fragaria_vesca	FvH4_5g17980
malus_domestica	MD06G1235400.v1.1 MD14G1242400.v1.1
prunus_persica	Prupe.5G240100_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1
pyrus_communis	pycom06g21030 pycom14g12970 pycom14g20380
rosa_chinensis	RchiOBHm_Chr7g0177621
rosa_laevigata	RLG00000005519 RLG00000005520
rosa_multiflora	Rmu_ssc0000330.1_g000015
rosa_roxburghii	Rroxscaffold_3G00275720
rosa_rugosa	Rorug06G0407900 Rorug06G0408000
rosa_samantha	Rh7AG007200 Rh7AG007300 Rh7BG007200 Rh7BG007300 Rh7CG007700 Rh7CG007800 Rh7DG007400 Rh7DG007500
rosa_wichuraiana	Rw7G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	470, 608
AasI	GACNNNNNNGTC	2 cut(s)	1034, 1139
Acc16I	TGCGCA	1 cut(s)	74
Acc65I	GGTACC	1 cut(s)	1228
AccB1I	GGYRCC	1 cut(s)	1228
AccB7I	CCANNNNNTGG	2 cut(s)	1225, 1680
AccI	GTMKAC	1 cut(s)	1075
AccII	CGCG	2 cut(s)	692, 911
AciI	CCGC	7 cut(s)	18, 633, 668, 690, 698, 909, 1288
AclWI	GGATC	5 cut(s)	655, 1192, 1205, 1567, 1595
AcoI	YGGCCR	1 cut(s)	665
AcsI	RAATTY	2 cut(s)	816, 1255
AcuI	CTGAAG	2 cut(s)	275, 801
AfaI	GTAC	7 cut(s)	52, 272, 546, 1230, 1550, 1668, 1837
AfiI	CCNNNNNNNGG	4 cut(s)	517, 677, 1225, 1680
AflIII	ACRYGT	2 cut(s)	1029, 1134
AgsI	TTSAA	6 cut(s)	455, 1407, 1457, 1485, 1762, 1850
AjnI	CCWGG	6 cut(s)	200, 894, 1218, 1381, 1396, 1789
AleI	CACNNNNGTG	1 cut(s)	1817
Alw26I	GTCTC	4 cut(s)	828, 1020, 1085, 1304
AlwI	GGATC	5 cut(s)	655, 1192, 1205, 1567, 1595
AlwNI	CAGNNNCTG	1 cut(s)	1388
AoxI	GGCC	3 cut(s)	183, 234, 665
ApeKI	GCWGC	2 cut(s)	125, 1337
ApoI	RAATTY	2 cut(s)	816, 1255
ArsI	GACNNNNNNTTYG	4 cut(s)	38, 70, 544, 576
Asp700I	GAANNNNTTC	2 cut(s)	1452, 1757
Asp718I	GGTACC	1 cut(s)	1228
AspLEI	GCGC	2 cut(s)	75, 1560
AspS9I	GGNCC	2 cut(s)	1385, 1400
AsuHPI	GGTGA	7 cut(s)	16, 35, 271, 500, 865, 1259, 1748
AvaII	GGWCC	2 cut(s)	1385, 1400
BaeGI	GKGCMC	2 cut(s)	397, 1814
BamHI	GGATCC	1 cut(s)	1197
BanI	GGYRCC	1 cut(s)	1228
BanII	GRGCYC	1 cut(s)	169
BarI	GAAGNNNNNNTAC	2 cut(s)	43, 75
BbsI	GAAGAC	2 cut(s)	443, 906
BbvI	GCAGC	2 cut(s)	137, 1349
BceAI	ACGGC	1 cut(s)	1545
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	6 cut(s)	202, 896, 1220, 1383, 1398, 1791
BclI	TGATCA	1 cut(s)	1690
BcoDI	GTCTC	4 cut(s)	828, 1020, 1085, 1304
BfaI	CTAG	4 cut(s)	654, 1190, 1296, 1322
BfmI	CTRYAG	3 cut(s)	501, 921, 1584
BisI	GCNGC	4 cut(s)	126, 668, 699, 1338
BlsI	GCNGC	4 cut(s)	127, 669, 700, 1339
Bme1390I	CCNGG	6 cut(s)	202, 896, 1220, 1383, 1398, 1791
Bme18I	GGWCC	2 cut(s)	1385, 1400
BmgT120I	GGNCC	2 cut(s)	1385, 1400
BmiI	GGNNCC	5 cut(s)	168, 210, 1199, 1230, 1795
BmrFI	CCNGG	6 cut(s)	202, 896, 1220, 1383, 1398, 1791
BmsI	GCATC	6 cut(s)	87, 311, 578, 609, 957, 1621
BoxI	GACNNNNGTC	1 cut(s)	1398
BpiI	GAAGAC	2 cut(s)	443, 906
BplI	GAGNNNNNCTC	2 cut(s)	727, 759
BpuEI	CTTGAG	2 cut(s)	500, 1786
BsaAI	YACGTR	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	1381, 1396
Bsc4I	CCNNNNNNNGG	4 cut(s)	517, 677, 1225, 1680
Bse118I	RCCGGY	2 cut(s)	20, 100
Bse1I	ACTGG	1 cut(s)	844
BseBI	CCWGG	6 cut(s)	202, 896, 1220, 1383, 1398, 1791
BseDI	CCNNGG	2 cut(s)	1381, 1396
BseGI	GGATG	4 cut(s)	166, 210, 271, 302
BseLI	CCNNNNNNNGG	4 cut(s)	517, 677, 1225, 1680
BseMII	CTCAG	3 cut(s)	1111, 1315, 1853
BseNI	ACTGG	1 cut(s)	844
BseSI	GKGCMC	2 cut(s)	397, 1814
BseX3I	CGGCCG	1 cut(s)	665
BseXI	GCAGC	2 cut(s)	137, 1349
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	2 cut(s)	692, 911
Bsh1285I	CGRYCG	3 cut(s)	18, 535, 668
BshFI	GGCC	3 cut(s)	185, 236, 667
BshNI	GGYRCC	1 cut(s)	1228
BsiEI	CGRYCG	3 cut(s)	18, 535, 668
BsiSI	CCGG	4 cut(s)	21, 101, 212, 664
BslFI	GGGAC	2 cut(s)	68, 342
BslI	CCNNNNNNNGG	4 cut(s)	517, 677, 1225, 1680
BsmAI	GTCTC	4 cut(s)	828, 1020, 1085, 1304
BsmFI	GGGAC	2 cut(s)	68, 342
BsmI	GAATGC	2 cut(s)	221, 1560
BsnI	GGCC	3 cut(s)	185, 236, 667
Bsp1286I	GDGCHC	3 cut(s)	169, 397, 1814
Bsp1407I	TGTACA	2 cut(s)	1548, 1666
Bsp143I	GATC	9 cut(s)	6, 25, 34, 660, 726, 1197, 1572, 1600, 1690
BspACI	CCGC	7 cut(s)	18, 633, 668, 690, 698, 909, 1288
BspANI	GGCC	3 cut(s)	185, 236, 667
BspCNI	CTCAG	3 cut(s)	1110, 1314, 1852
BspFNI	CGCG	2 cut(s)	692, 911
BspHI	TCATGA	3 cut(s)	93, 228, 357
BspLI	GGNNCC	5 cut(s)	168, 210, 1199, 1230, 1795
BspPI	GGATC	5 cut(s)	655, 1192, 1205, 1567, 1595
BspQI	GCTCTTC	1 cut(s)	1443
BspT107I	GGYRCC	1 cut(s)	1228
BsrFI	RCCGGY	2 cut(s)	20, 100
BsrGI	TGTACA	2 cut(s)	1548, 1666
BsrI	ACTGG	1 cut(s)	844
BssAI	RCCGGY	2 cut(s)	20, 100
BssECI	CCNNGG	2 cut(s)	1381, 1396
BssMI	GATC	9 cut(s)	6, 25, 34, 660, 726, 1197, 1572, 1600, 1690
BssNAI	GTATAC	1 cut(s)	1076
Bst1107I	GTATAC	1 cut(s)	1076
Bst2UI	CCWGG	6 cut(s)	202, 896, 1220, 1383, 1398, 1791
Bst4CI	ACNGT	5 cut(s)	50, 505, 873, 1169, 1548
Bst6I	CTCTTC	3 cut(s)	1083, 1167, 1443
BstAUI	TGTACA	2 cut(s)	1548, 1666
BstBAI	YACGTR	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	102, 624, 1047
BstDEI	CTNAG	3 cut(s)	1097, 1301, 1839
BstF5I	GGATG	4 cut(s)	166, 210, 271, 302
BstFNI	CGCG	2 cut(s)	692, 911
BstHHI	GCGC	2 cut(s)	75, 1560
BstKTI	GATC	9 cut(s)	9, 28, 37, 663, 729, 1200, 1575, 1603, 1693
BstMAI	GTCTC	4 cut(s)	828, 1020, 1085, 1304
BstMBI	GATC	9 cut(s)	6, 25, 34, 660, 726, 1197, 1572, 1600, 1690
BstMCI	CGRYCG	3 cut(s)	18, 535, 668
BstMWI	GCNNNNNNNGC	7 cut(s)	427, 632, 698, 767, 1357, 1566, 1647
BstNI	CCWGG	6 cut(s)	202, 896, 1220, 1383, 1398, 1791
BstNSI	RCATGY	2 cut(s)	1033, 1138
BstPAI	GACNNNNGTC	1 cut(s)	1398
BstSCI	CCNGG	6 cut(s)	200, 894, 1218, 1381, 1396, 1789
BstSFI	CTRYAG	3 cut(s)	501, 921, 1584
BstSLI	GKGCMC	2 cut(s)	397, 1814
BstUI	CGCG	2 cut(s)	692, 911
BstV1I	GCAGC	2 cut(s)	137, 1349
BstV2I	GAAGAC	2 cut(s)	443, 906
BstX2I	RGATCY	2 cut(s)	660, 1197
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	2 cut(s)	660, 1197
BstZ17I	GTATAC	1 cut(s)	1076
BstZI	CGGCCG	1 cut(s)	665
BsuRI	GGCC	3 cut(s)	185, 236, 667
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	4 cut(s)	166, 210, 271, 302
BtsIMutI	CAGTG	2 cut(s)	282, 1174
Cac8I	GCNNGC	3 cut(s)	102, 624, 1047
CaiI	CAGNNNCTG	1 cut(s)	1388
CciI	TCATGA	3 cut(s)	93, 228, 357
CfoI	GCGC	2 cut(s)	75, 1560
Cfr10I	RCCGGY	2 cut(s)	20, 100
Cfr13I	GGNCC	2 cut(s)	1385, 1400
CseI	GACGC	1 cut(s)	900
Csp6I	GTAC	7 cut(s)	51, 271, 545, 1229, 1549, 1667, 1836
CviQI	GTAC	7 cut(s)	51, 271, 545, 1229, 1549, 1667, 1836
DdeI	CTNAG	3 cut(s)	1097, 1301, 1839
DpnI	GATC	9 cut(s)	8, 27, 36, 662, 728, 1199, 1574, 1602, 1692
DpnII	GATC	9 cut(s)	6, 25, 34, 660, 726, 1197, 1572, 1600, 1690
DraI	TTTAAA	1 cut(s)	372
DrdI	GACNNNNNNGTC	2 cut(s)	1034, 1139
DseDI	GACNNNNNNGTC	2 cut(s)	1034, 1139
EaeI	YGGCCR	1 cut(s)	665
EagI	CGGCCG	1 cut(s)	665
Eam1104I	CTCTTC	3 cut(s)	1083, 1167, 1443
EarI	CTCTTC	3 cut(s)	1083, 1167, 1443
EciI	GGCGGA	1 cut(s)	1277
EclXI	CGGCCG	1 cut(s)	665
Eco24I	GRGCYC	1 cut(s)	169
Eco32I	GATATC	2 cut(s)	810, 867
Eco47I	GGWCC	2 cut(s)	1385, 1400
Eco52I	CGGCCG	1 cut(s)	665
Eco57I	CTGAAG	2 cut(s)	275, 801
EcoO109I	RGGNCCY	2 cut(s)	1385, 1400
EcoRII	CCWGG	6 cut(s)	200, 894, 1218, 1381, 1396, 1789
EcoRV	GATATC	2 cut(s)	810, 867
EcoT38I	GRGCYC	1 cut(s)	169
FalI	AAGNNNNNCTT	2 cut(s)	1477, 1509
FaqI	GGGAC	2 cut(s)	68, 342
FbaI	TGATCA	1 cut(s)	1690
FblI	GTMKAC	1 cut(s)	1075
Fnu4HI	GCNGC	4 cut(s)	126, 668, 699, 1338
FokI	GGATG	4 cut(s)	173, 217, 278, 289
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	126, 668, 699, 1338
FspBI	CTAG	4 cut(s)	654, 1190, 1296, 1322
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	2 cut(s)	74, 1559
GluI	GCNGC	4 cut(s)	126, 668, 699, 1338
HaeIII	GGCC	3 cut(s)	185, 236, 667
HapII	CCGG	4 cut(s)	21, 101, 212, 664
HgaI	GACGC	1 cut(s)	900
HhaI	GCGC	2 cut(s)	75, 1560
Hin6I	GCGC	2 cut(s)	73, 1558
HinP1I	GCGC	2 cut(s)	73, 1558
HincII	GTYRAC	2 cut(s)	259, 444
HindII	GTYRAC	2 cut(s)	259, 444
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	6 cut(s)	174, 513, 673, 776, 927, 1773
HpaI	GTTAAC	1 cut(s)	444
HpaII	CCGG	4 cut(s)	21, 101, 212, 664
HphI	GGTGA	7 cut(s)	16, 35, 271, 500, 865, 1259, 1748
Hpy166II	GTNNAC	5 cut(s)	259, 444, 508, 545, 1076
Hpy188I	TCNGA	9 cut(s)	135, 294, 573, 781, 790, 797, 1100, 1108, 1153
Hpy8I	GTNNAC	5 cut(s)	259, 444, 508, 545, 1076
Hpy99I	CGWCG	2 cut(s)	16, 428
HpyAV	CCTTC	9 cut(s)	837, 953, 971, 1242, 1294, 1413, 1590, 1747, 1807
HpyCH4III	ACNGT	5 cut(s)	50, 505, 873, 1169, 1548
HpyCH4IV	ACGT	2 cut(s)	255, 323
HpyCH4V	TGCA	7 cut(s)	32, 956, 1049, 1275, 1309, 1337, 1497
HpyF10VI	GCNNNNNNNGC	7 cut(s)	427, 632, 698, 767, 1357, 1566, 1647
HpyF3I	CTNAG	3 cut(s)	1097, 1301, 1839
HpySE526I	ACGT	2 cut(s)	255, 323
HspAI	GCGC	2 cut(s)	73, 1558
KpnI	GGTACC	1 cut(s)	1232
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	1690
KspAI	GTTAAC	1 cut(s)	444
Kzo9I	GATC	9 cut(s)	6, 25, 34, 660, 726, 1197, 1572, 1600, 1690
LguI	GCTCTTC	1 cut(s)	1443
LmnI	GCTCC	2 cut(s)	172, 208
Lsp1109I	GCAGC	2 cut(s)	137, 1349
LweI	GCATC	6 cut(s)	87, 311, 578, 609, 957, 1621
MaeI	CTAG	4 cut(s)	654, 1190, 1296, 1322
MaeII	ACGT	2 cut(s)	255, 323
MaeIII	GTNAC	4 cut(s)	193, 277, 1208, 1736
MalI	GATC	9 cut(s)	8, 27, 36, 662, 728, 1199, 1574, 1602, 1692
MboI	GATC	9 cut(s)	6, 25, 34, 660, 726, 1197, 1572, 1600, 1690
MboII	GAAGA	8 cut(s)	443, 628, 890, 911, 1100, 1184, 1460, 1601
MflI	RGATCY	2 cut(s)	660, 1197
MhlI	GDGCHC	3 cut(s)	169, 397, 1814
MlyI	GAGTC	2 cut(s)	168, 507
MmeI	TCCRAC	3 cut(s)	811, 855, 1736
MroNI	GCCGGC	1 cut(s)	100
MroXI	GAANNNNTTC	2 cut(s)	1452, 1757
MseI	TTAA	7 cut(s)	350, 371, 443, 459, 1128, 1785, 1853
MslI	CAYNNNNRTG	3 cut(s)	203, 681, 1817
MspI	CCGG	4 cut(s)	21, 101, 212, 664
MspR9I	CCNGG	6 cut(s)	202, 896, 1220, 1383, 1398, 1791
Mva1269I	GAATGC	2 cut(s)	221, 1560
MvaI	CCWGG	6 cut(s)	202, 896, 1220, 1383, 1398, 1791
MvnI	CGCG	2 cut(s)	692, 911
MwoI	GCNNNNNNNGC	7 cut(s)	427, 632, 698, 767, 1357, 1566, 1647
NaeI	GCCGGC	1 cut(s)	102
NdeII	GATC	9 cut(s)	6, 25, 34, 660, 726, 1197, 1572, 1600, 1690
NgoMIV	GCCGGC	1 cut(s)	100
NlaIV	GGNNCC	5 cut(s)	168, 210, 1199, 1230, 1795
NmuCI	GTSAC	3 cut(s)	193, 277, 1736
NsbI	TGCGCA	1 cut(s)	74
NspI	RCATGY	2 cut(s)	1033, 1138
OliI	CACNNNNGTG	1 cut(s)	1817
PagI	TCATGA	3 cut(s)	93, 228, 357
PciI	ACATGT	2 cut(s)	1029, 1134
PciSI	GCTCTTC	1 cut(s)	1443
PctI	GAATGC	2 cut(s)	221, 1560
PdiI	GCCGGC	1 cut(s)	102
PdmI	GAANNNNTTC	2 cut(s)	1452, 1757
PfeI	GAWTC	4 cut(s)	673, 776, 927, 1773
PflMI	CCANNNNNTGG	2 cut(s)	1225, 1680
PkrI	GCNGC	4 cut(s)	127, 669, 700, 1339
PleI	GAGTC	2 cut(s)	168, 507
PpsI	GAGTC	2 cut(s)	168, 507
Ppu21I	YACGTR	1 cut(s)	324
PpuMI	RGGWCCY	2 cut(s)	1385, 1400
PscI	ACATGT	2 cut(s)	1029, 1134
PshAI	GACNNNNGTC	1 cut(s)	1398
PsiI	TTATAA	2 cut(s)	470, 608
Psp5II	RGGWCCY	2 cut(s)	1385, 1400
Psp6I	CCWGG	6 cut(s)	200, 894, 1218, 1381, 1396, 1789
PspGI	CCWGG	6 cut(s)	200, 894, 1218, 1381, 1396, 1789
PspN4I	GGNNCC	5 cut(s)	168, 210, 1199, 1230, 1795
PspPI	GGNCC	2 cut(s)	1385, 1400
PspPPI	RGGWCCY	2 cut(s)	1385, 1400
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PstNI	CAGNNNCTG	1 cut(s)	1388
PsuI	RGATCY	2 cut(s)	660, 1197
RsaI	GTAC	7 cut(s)	52, 272, 546, 1230, 1550, 1668, 1837
RsaNI	GTAC	7 cut(s)	51, 271, 545, 1229, 1549, 1667, 1836
RseI	CAYNNNNRTG	3 cut(s)	203, 681, 1817
SapI	GCTCTTC	1 cut(s)	1443
SaqAI	TTAA	7 cut(s)	350, 371, 443, 459, 1128, 1785, 1853
SatI	GCNGC	4 cut(s)	126, 668, 699, 1338
Sau3AI	GATC	9 cut(s)	6, 25, 34, 660, 726, 1197, 1572, 1600, 1690
Sau96I	GGNCC	2 cut(s)	1385, 1400
SchI	GAGTC	2 cut(s)	168, 507
ScrFI	CCNGG	6 cut(s)	202, 896, 1220, 1383, 1398, 1791
SduI	GDGCHC	3 cut(s)	169, 397, 1814
SfaNI	GCATC	6 cut(s)	87, 311, 578, 609, 957, 1621
SfcI	CTRYAG	3 cut(s)	501, 921, 1584
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	2 cut(s)	1385, 1400
SmiMI	CAYNNNNRTG	3 cut(s)	203, 681, 1817
SmlI	CTYRAG	2 cut(s)	515, 1801
SmoI	CTYRAG	2 cut(s)	515, 1801
SsiI	CCGC	7 cut(s)	18, 633, 668, 690, 698, 909, 1288
SspMI	CTAG	4 cut(s)	654, 1190, 1296, 1322
StyD4I	CCNGG	6 cut(s)	200, 894, 1218, 1381, 1396, 1789
TaaI	ACNGT	5 cut(s)	50, 505, 873, 1169, 1548
TaiI	ACGT	2 cut(s)	258, 326
TaqI	TCGA	2 cut(s)	11, 531
TaqII	GACCGA	1 cut(s)	549
TatI	WGTACW	3 cut(s)	1548, 1666, 1835
TauI	GCSGC	2 cut(s)	670, 701
TfiI	GAWTC	4 cut(s)	673, 776, 927, 1773
Tru1I	TTAA	7 cut(s)	350, 371, 443, 459, 1128, 1785, 1853
Tru9I	TTAA	7 cut(s)	350, 371, 443, 459, 1128, 1785, 1853
TscAI	CASTG	2 cut(s)	289, 1174
TseFI	GTSAC	3 cut(s)	193, 277, 1736
TseI	GCWGC	2 cut(s)	125, 1337
Tsp45I	GTSAC	3 cut(s)	193, 277, 1736
TspDTI	ATGAA	4 cut(s)	82, 257, 422, 665
TspRI	CASTG	2 cut(s)	289, 1174
Van91I	CCANNNNNTGG	2 cut(s)	1225, 1680
VpaK11BI	GGWCC	2 cut(s)	1385, 1400
XapI	RAATTY	2 cut(s)	816, 1255
XceI	RCATGY	2 cut(s)	1033, 1138
XmiI	GTMKAC	1 cut(s)	1075
XmnI	GAANNNNTTC	2 cut(s)	1452, 1757
XspI	CTAG	4 cut(s)	654, 1190, 1296, 1322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.