AT5G23100

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015885
Physical Location & Seq
Forward (+)
7753222 .. 7754813
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23100.1

Sequence Viewer

Length: 834 bp
ATGGCTAAAGACTTTGCCTCCAAGAGACACAATAGTTTCCACTGGACAAGAAAAGTCGGATCAGACGAAAACGACGACGTTTCTTCTCATAAACCTCTTCCTCATCACAACAACACTAAACCTTCTTCTTCTTCATCTTCATCTTCCTCTAATGTAATCACTCACAAAAAAAAGCTTCAATCTTTCGCCGTTTCTCGTCTCCGGTCAGTTATCGCTACTCTAAGCAGAGCACGACCCGGTAACCAAAACTCCGGGCTCGGGTCACGGGTCGTGGGTACACTTTTCGGGTCTCGTCGTGGTCACGTGCATTTCTCTATCCAGAAAGATCCTAATTCTCCACCGGCGTTTTTAATCGAACTCGCTACTCCGATTAGTGGGTTAGTCAAAGAAATGGCTTCAGGACTCGTTAGAATCGCTTTGGAGTGTGATAAGGGGAAAGAGGAAGAAGAAGGAGAAGAAAAAAACGGAACTTTACGTCACGGCGGAGGAGACAAGACGAAGACGACGACGACGGCGGCGGTTTCACGGCGGTTGGTGGAGGAGCCGATGTGGAGAACTTATTGTAACGGGAAAAAGTGTGGATTTGCTACGAGGAGAGAGTGTGGTGAGAAGGAGAAAAAGGTTTTGAAAGCTCTTGAGATGGTTTCAATGGGCGCCGGAGTCTTACCAGAGACGGAGGAGATAGGCGGTGGTGGCGGCGGCGGAGGAGATATAATGTATATGAGGGCGAAATTCGAGAGAATTGTTGGGTCGCGTGATTCAGAAGCCTTCTACATGATGAATCCTGATAGTAATGGAGCTCCTGAGCTTAGTATCTATCTACTCAGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

277

Amino Acids

30.17

Weight (kDa)

9.47

Isoelectric Point (pI)

61.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 90 - 276 5.8e-67 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015885)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23100
fragaria_vesca FvH4_5g12900
malus_domestica MD06G1209400.v1.1 MD14G1219900.v1.1
prunus_persica Prupe.5G214500_v2.0.a1
pyrus_communis pycom06g18700
rosa_chinensis RchiOBHm_Chr7g0184341
rosa_laevigata RLG00000004985
rosa_multiflora Rmu_sc0001557.1_g000024
rosa_roxburghii Rroxscaffold_3G00269710
rosa_samantha Rh7AG080900 Rh7BG066300 Rh7CG066600 Rh7DG066300
rosa_wichuraiana Rw7G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 653
AccII CGCG 1 cut(s) 754
AciI CCGC 8 cut(s) 483, 515, 518, 529, 687, 696, 699, 702
AclWI GGATC 2 cut(s) 67, 320
AcsI RAATTY 1 cut(s) 731
AcuI CTGAAG 1 cut(s) 381
AcvI CACGTG 1 cut(s) 304
AcyI GRCGYC 1 cut(s) 654
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 2 cut(s) 258, 374
AgsI TTSAA 3 cut(s) 179, 628, 648
AluBI AGCT 4 cut(s) 175, 632, 800, 808
AluI AGCT 4 cut(s) 175, 632, 800, 808
Alw21I GWGCWC 2 cut(s) 232, 802
Alw26I GTCTC 5 cut(s) 19, 203, 294, 483, 665
AlwI GGATC 2 cut(s) 67, 320
AlwNI CAGNNNCTG 1 cut(s) 831
Ama87I CYCGRG 1 cut(s) 257
ApoI RAATTY 1 cut(s) 731
AspLEI GCGC 1 cut(s) 656
AsuC2I CCSGG 2 cut(s) 237, 253
AsuHPI GGTGA 1 cut(s) 617
AvaI CYCGRG 1 cut(s) 257
BanI GGYRCC 1 cut(s) 653
BanII GRGCYC 2 cut(s) 258, 802
BbrPI CACGTG 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 506
Bbv12I GWGCWC 2 cut(s) 232, 802
BccI CCATC 1 cut(s) 634
BceAI ACGGC 4 cut(s) 173, 496, 528, 542
BcnI CCSGG 2 cut(s) 237, 253
BcoDI GTCTC 5 cut(s) 19, 203, 294, 483, 665
BfoI RGCGCY 1 cut(s) 657
BisI GCNGC 3 cut(s) 516, 697, 700
BlsI GCNGC 3 cut(s) 517, 698, 701
Bme1390I CCNGG 2 cut(s) 237, 253
BmeT110I CYCGRG 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 543, 655
BmrFI CCNGG 2 cut(s) 237, 253
BpiI GAAGAC 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 656
BpuMI CCSGG 2 cut(s) 237, 253
BsaAI YACGTR 1 cut(s) 304
BsaHI GRCGYC 1 cut(s) 654
BsaI GGTCTC 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 201
BsaXI ACNNNNNCTCC 7 cut(s) 32, 233, 263, 533, 563, 586, 616
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 374
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 258, 374
BseMII CTCAG 1 cut(s) 795
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 5 cut(s) 501, 554, 607, 692, 720
Bsh1236I CGCG 1 cut(s) 754
BshNI GGYRCC 1 cut(s) 653
BsiHKAI GWGCWC 2 cut(s) 232, 802
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 5 cut(s) 202, 237, 252, 341, 657
BslI CCNNNNNNNGG 2 cut(s) 258, 374
BsmAI GTCTC 5 cut(s) 19, 203, 294, 483, 665
BsmBI CGTCTC 2 cut(s) 203, 665
Bso31I GGTCTC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 257
Bsp1286I GDGCHC 3 cut(s) 232, 258, 802
Bsp143I GATC 2 cut(s) 59, 325
BspACI CCGC 8 cut(s) 483, 515, 518, 529, 687, 696, 699, 702
BspCNI CTCAG 1 cut(s) 796
BspFNI CGCG 1 cut(s) 754
BspLI GGNNCC 2 cut(s) 543, 655
BspPI GGATC 2 cut(s) 67, 320
BspT107I GGYRCC 1 cut(s) 653
BspTNI GGTCTC 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 340
BssMI GATC 2 cut(s) 59, 325
BssNI GRCGYC 1 cut(s) 654
Bst6I CTCTTC 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 654
BstBAI YACGTR 1 cut(s) 304
BstDEI CTNAG 4 cut(s) 221, 804, 809, 824
BstEII GGTNACC 1 cut(s) 239
BstFNI CGCG 1 cut(s) 754
BstH2I RGCGCY 1 cut(s) 657
BstHHI GCGC 1 cut(s) 656
BstKTI GATC 2 cut(s) 62, 328
BstMAI GTCTC 5 cut(s) 19, 203, 294, 483, 665
BstMBI GATC 2 cut(s) 59, 325
BstMWI GCNNNNNNNGC 1 cut(s) 693
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 235, 251
BstUI CGCG 1 cut(s) 754
BstV2I GAAGAC 1 cut(s) 506
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BtsIMutI CAGTG 1 cut(s) 40
CaiI CAGNNNCTG 1 cut(s) 831
CfoI GCGC 1 cut(s) 656
Cfr10I RCCGGY 1 cut(s) 340
Csp6I GTAC 1 cut(s) 276
CviAII CATG 1 cut(s) 775
CviJI RGCY 9 cut(s) 5, 175, 256, 395, 544, 632, 767, 800, 808
CviKI_1 RGCY 9 cut(s) 5, 175, 256, 395, 544, 632, 767, 800, 808
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 4 cut(s) 221, 804, 809, 824
DinI GGCGCC 1 cut(s) 655
DpnI GATC 2 cut(s) 61, 327
DpnII GATC 2 cut(s) 59, 325
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
EciI GGCGGA 2 cut(s) 498, 717
Ecl136II GAGCTC 1 cut(s) 800
Eco24I GRGCYC 2 cut(s) 258, 802
Eco31I GGTCTC 1 cut(s) 294
Eco53kI GAGCTC 1 cut(s) 800
Eco57I CTGAAG 1 cut(s) 381
Eco72I CACGTG 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 257
Eco91I GGTNACC 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 800
EcoO65I GGTNACC 1 cut(s) 239
EcoT38I GRGCYC 2 cut(s) 258, 802
EgeI GGCGCC 1 cut(s) 655
EheI GGCGCC 1 cut(s) 655
Esp3I CGTCTC 2 cut(s) 203, 665
FaeI CATG 1 cut(s) 778
FaiI YATR 5 cut(s) 90, 713, 720, 722, 776
FatI CATG 1 cut(s) 774
Fnu4HI GCNGC 3 cut(s) 516, 697, 700
FriOI GRGCYC 2 cut(s) 258, 802
Fsp4HI GCNGC 3 cut(s) 516, 697, 700
GlaI GCGC 1 cut(s) 655
GluI GCNGC 3 cut(s) 516, 697, 700
HaeII RGCGCY 1 cut(s) 657
HapII CCGG 5 cut(s) 202, 237, 252, 341, 657
HhaI GCGC 1 cut(s) 656
Hin1I GRCGYC 1 cut(s) 654
Hin1II CATG 1 cut(s) 778
Hin6I GCGC 1 cut(s) 654
HinP1I GCGC 1 cut(s) 654
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 6 cut(s) 402, 411, 660, 758, 781, 828
HpaII CCGG 5 cut(s) 202, 237, 252, 341, 657
HphI GGTGA 1 cut(s) 617
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 6 cut(s) 59, 64, 369, 763, 827, 833
Hpy188III TCNNGA 6 cut(s) 319, 399, 635, 736, 785, 803
Hpy8I GTNNAC 1 cut(s) 278
Hpy99I CGWCG 6 cut(s) 77, 80, 297, 508, 511, 514
HpyAV CCTTC 4 cut(s) 132, 443, 604, 778
HpyCH4IV ACGT 3 cut(s) 78, 303, 475
HpyCH4V TGCA 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 693
HpyF3I CTNAG 4 cut(s) 221, 804, 809, 824
HpySE526I ACGT 3 cut(s) 78, 303, 475
Hsp92I GRCGYC 1 cut(s) 654
Hsp92II CATG 1 cut(s) 778
HspAI GCGC 1 cut(s) 654
KasI GGCGCC 1 cut(s) 653
Kzo9I GATC 2 cut(s) 59, 325
LmnI GCTCC 3 cut(s) 541, 797, 805
MaeII ACGT 3 cut(s) 78, 303, 475
MaeIII GTNAC 5 cut(s) 239, 261, 299, 476, 563
MalI GATC 2 cut(s) 61, 327
MboI GATC 2 cut(s) 59, 325
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 3 cut(s) 232, 258, 802
MluCI AATT 3 cut(s) 331, 731, 741
Mly113I GGCGCC 1 cut(s) 654
MlyI GAGTC 2 cut(s) 396, 669
MmeI TCCRAC 1 cut(s) 37
MseI TTAA 1 cut(s) 350
MspI CCGG 5 cut(s) 202, 237, 252, 341, 657
MspR9I CCNGG 2 cut(s) 237, 253
MvnI CGCG 1 cut(s) 754
MwoI GCNNNNNNNGC 1 cut(s) 693
NarI GGCGCC 1 cut(s) 654
NciI CCSGG 2 cut(s) 237, 253
NdeII GATC 2 cut(s) 59, 325
NlaIII CATG 1 cut(s) 778
NlaIV GGNNCC 2 cut(s) 543, 655
NmuCI GTSAC 3 cut(s) 261, 299, 476
PcsI WCGNNNNNNNCGW 3 cut(s) 63, 72, 503
PfeI GAWTC 4 cut(s) 411, 758, 781, 828
PkrI GCNGC 3 cut(s) 517, 698, 701
PleI GAGTC 2 cut(s) 396, 668
PluTI GGCGCC 1 cut(s) 657
PmaCI CACGTG 1 cut(s) 304
PmlI CACGTG 1 cut(s) 304
PpsI GAGTC 2 cut(s) 396, 668
Ppu21I YACGTR 1 cut(s) 304
Psp124BI GAGCTC 1 cut(s) 802
PspCI CACGTG 1 cut(s) 304
PspEI GGTNACC 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 543, 655
PstNI CAGNNNCTG 1 cut(s) 831
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SacI GAGCTC 1 cut(s) 802
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 3 cut(s) 516, 697, 700
Sau3AI GATC 2 cut(s) 59, 325
SchI GAGTC 2 cut(s) 396, 669
ScrFI CCNGG 2 cut(s) 237, 253
SduI GDGCHC 3 cut(s) 232, 258, 802
SfoI GGCGCC 1 cut(s) 655
SgrAI CRCCGGYG 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 3 cut(s) 331, 731, 741
SsiI CCGC 8 cut(s) 483, 515, 518, 529, 687, 696, 699, 702
SspDI GGCGCC 1 cut(s) 653
SstI GAGCTC 1 cut(s) 802
StyD4I CCNGG 2 cut(s) 235, 251
TaiI ACGT 3 cut(s) 81, 306, 478
TaqI TCGA 2 cut(s) 354, 735
TasI AATT 3 cut(s) 331, 731, 741
TauI GCSGC 3 cut(s) 518, 699, 702
TfiI GAWTC 4 cut(s) 411, 758, 781, 828
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 3 cut(s) 261, 299, 476
Tsp45I GTSAC 3 cut(s) 261, 299, 476
TspDTI ATGAA 3 cut(s) 123, 129, 794
TspGWI ACGGA 2 cut(s) 480, 689
TspRI CASTG 1 cut(s) 47
XapI RAATTY 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.