Prupe.5G214500_v2.0.a1

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015885
Physical Location & Seq
Forward (+)
16905855 .. 16907588
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G214500.1

Sequence Viewer

Length: 840 bp
ATGAAGACAGTGAGCATGGCAAGGACCTTGCAAGACTCTTCCTCCAAGAGACACTTCCACTGGACAAACAAGGTTGGTACTGAAGATGATGATCATGTAGCGCTTCCAAGCTTCAAGTCCTCATCCTCCTCAAAAACAACTGATCACGAGGAAGAGAAGAACACAGAGCATGATCATCATCCCAAACCACAACATGGCCATGTGGCTGCAGCAGCGGCAGCTCATCAACTTCCAAGGAGGAAACTTCAGGCAGCTGCAGTGTCCAGGCTCCGTTCGGTTCTCACCGCCTTCGGTAAGAACCGTTCGAGCCTACCACTCGGGCTTGGACCCCGAGTGGTAGGCACCCTTTTCGGCTCTAGGCGTGGTCATGTACATTTTGCATTCCAGAGGGACCCAAATTCACAACCAGCCTTTTTGATCGAGCTTGCCACTCCAATCAGTGGGTTGGTTCGAGAAATGGCATCTGGGCTCGTTAGAATTGCCTTGGAGTGTGACAAAGACAAAGAAGAAATGAAAAAGAAAGACAAAGCTCTGAGGCTGCTAGAAGAGCCTGTGTGGAGAACATTTTGCAACGGCAAGAAGTATGGTTTTGCAAGCAGAAGAGAATGTGGGCCCAAGGAGTGGAAGGTGCTGAAAGCTGTGGAGCCAATTTCAATGGGGGCGGGTGTTTTGCCAGCTGCTGCAGGGAATGAAGCTGAAGATGGGTCCGATGGTGAACTCATGTACATGAGGGCCAAGTTTGAGAGAGTTGTTGGATCCAGAGACTCTGAGGCCTTCTACATGATGAACCCTGATAGCAATGGAGCTCCTGAACTCAGTATCTATTTGCTTCGAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

280

Amino Acids

30.9

Weight (kDa)

9.28

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015885)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23100
fragaria_vesca FvH4_5g12900
malus_domestica MD06G1209400.v1.1 MD14G1219900.v1.1
prunus_persica Prupe.5G214500_v2.0.a1
pyrus_communis pycom06g18700
rosa_chinensis RchiOBHm_Chr7g0184341
rosa_laevigata RLG00000004985
rosa_multiflora Rmu_sc0001557.1_g000024
rosa_roxburghii Rroxscaffold_3G00269710
rosa_samantha Rh7AG080900 Rh7BG066300 Rh7CG066600 Rh7DG066300
rosa_wichuraiana Rw7G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 341
AccB7I CCANNNNNTGG 3 cut(s) 194, 440, 621
AciI CCGC 3 cut(s) 215, 285, 662
AclWI GGATC 2 cut(s) 750, 763
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 3 cut(s) 102, 230, 717
AfaI GTAC 3 cut(s) 79, 372, 725
AfeI AGCGCT 1 cut(s) 102
AfiI CCNNNNNNNGG 3 cut(s) 194, 440, 621
AgsI TTSAA 2 cut(s) 115, 654
AjnI CCWGG 1 cut(s) 263
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 9 cut(s) 111, 221, 254, 424, 530, 638, 677, 695, 806
AluI AGCT 9 cut(s) 111, 221, 254, 424, 530, 638, 677, 695, 806
Alw21I GWGCWC 1 cut(s) 808
Alw26I GTCTC 2 cut(s) 43, 756
AlwI GGATC 2 cut(s) 750, 763
AlwNI CAGNNNCTG 1 cut(s) 680
Ama87I CYCGRG 2 cut(s) 317, 330
Aor51HI AGCGCT 1 cut(s) 102
AoxI GGCC 4 cut(s) 196, 611, 732, 771
ApaI GGGCCC 1 cut(s) 615
ApeKI GCWGC 9 cut(s) 206, 209, 212, 218, 251, 254, 538, 677, 680
ApoI RAATTY 1 cut(s) 397
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 7 cut(s) 24, 326, 391, 611, 612, 705, 732
AsuHPI GGTGA 2 cut(s) 274, 725
AvaI CYCGRG 2 cut(s) 317, 330
AvaII GGWCC 4 cut(s) 24, 326, 391, 705
BaeGI GKGCMC 1 cut(s) 615
BalI TGGCCA 1 cut(s) 198
BamHI GGATCC 1 cut(s) 755
BanI GGYRCC 1 cut(s) 341
BanII GRGCYC 3 cut(s) 471, 615, 808
BauI CACGAG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 808
BbvI GCAGC 9 cut(s) 193, 221, 224, 230, 241, 263, 525, 664, 667
BccI CCATC 2 cut(s) 695, 704
BceAI ACGGC 1 cut(s) 589
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BciT130I CCWGG 1 cut(s) 265
BclI TGATCA 3 cut(s) 91, 142, 172
BcoDI GTCTC 2 cut(s) 43, 756
BfaI CTAG 2 cut(s) 357, 542
BfmI CTRYAG 3 cut(s) 207, 255, 681
BfoI RGCGCY 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 4 cut(s) 24, 326, 391, 705
BmeT110I CYCGRG 2 cut(s) 317, 330
BmgT120I GGNCC 7 cut(s) 24, 326, 391, 611, 612, 705, 732
BmiI GGNNCC 9 cut(s) 269, 328, 343, 392, 393, 613, 645, 706, 757
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 11
BsaBI GATNNNNATC 2 cut(s) 90, 177
BsaJI CCNNGG 3 cut(s) 233, 483, 615
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 440, 621
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 805
Bse8I GATNNNNATC 2 cut(s) 90, 177
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 3 cut(s) 233, 483, 615
BseGI GGATG 2 cut(s) 122, 178
BseJI GATNNNNATC 2 cut(s) 90, 177
BseLI CCNNNNNNNGG 3 cut(s) 194, 440, 621
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 3 cut(s) 524, 759, 829
BseNI ACTGG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 118
BseSI GKGCMC 1 cut(s) 615
BseXI GCAGC 9 cut(s) 193, 221, 224, 230, 241, 263, 525, 664, 667
BshFI GGCC 4 cut(s) 198, 613, 734, 773
BshNI GGYRCC 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 808
BsiHKCI CYCGRG 2 cut(s) 317, 330
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 3 cut(s) 194, 440, 621
BsmAI GTCTC 2 cut(s) 43, 756
BsmFI GGGAC 1 cut(s) 404
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 4 cut(s) 198, 613, 734, 773
BsoBI CYCGRG 2 cut(s) 317, 330
Bsp120I GGGCCC 1 cut(s) 611
Bsp1286I GDGCHC 3 cut(s) 471, 615, 808
Bsp1407I TGTACA 2 cut(s) 370, 723
Bsp143I GATC 5 cut(s) 91, 142, 172, 417, 755
BspACI CCGC 3 cut(s) 215, 285, 662
BspANI GGCC 4 cut(s) 198, 613, 734, 773
BspCNI CTCAG 3 cut(s) 525, 760, 828
BspLI GGNNCC 9 cut(s) 269, 328, 343, 392, 393, 613, 645, 706, 757
BspMAI CTGCAG 3 cut(s) 211, 259, 685
BspPI GGATC 2 cut(s) 750, 763
BspQI GCTCTTC 1 cut(s) 540
BspT107I GGYRCC 1 cut(s) 341
BsrDI GCAATG 1 cut(s) 805
BsrGI TGTACA 2 cut(s) 370, 723
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 3 cut(s) 233, 483, 615
BssMI GATC 5 cut(s) 91, 142, 172, 417, 755
BssSI CACGAG 1 cut(s) 146
BssT1I CCWWGG 3 cut(s) 233, 483, 615
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 2 cut(s) 10, 302
Bst6I CTCTTC 4 cut(s) 43, 147, 540, 595
BstAUI TGTACA 2 cut(s) 370, 723
BstC8I GCNNGC 3 cut(s) 426, 595, 675
BstDEI CTNAG 3 cut(s) 533, 768, 815
BstF5I GGATG 2 cut(s) 122, 178
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 5 cut(s) 94, 145, 175, 420, 758
BstMAI GTCTC 2 cut(s) 43, 756
BstMBI GATC 5 cut(s) 91, 142, 172, 417, 755
BstMWI GCNNNNNNNGC 4 cut(s) 212, 215, 218, 547
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 263
BstSFI CTRYAG 3 cut(s) 207, 255, 681
BstSLI GKGCMC 1 cut(s) 615
BstV1I GCAGC 9 cut(s) 193, 221, 224, 230, 241, 263, 525, 664, 667
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 755
BstYI RGATCY 1 cut(s) 755
BsuRI GGCC 4 cut(s) 198, 613, 734, 773
BtsCI GGATG 2 cut(s) 122, 178
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 4 cut(s) 15, 58, 264, 445
Cac8I GCNNGC 3 cut(s) 426, 595, 675
CaiI CAGNNNCTG 1 cut(s) 680
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 7 cut(s) 24, 326, 391, 611, 612, 705, 732
Csp6I GTAC 3 cut(s) 78, 371, 724
CviAII CATG 9 cut(s) 16, 95, 170, 194, 200, 368, 721, 727, 781
CviQI GTAC 3 cut(s) 78, 371, 724
DdeI CTNAG 3 cut(s) 533, 768, 815
DpnI GATC 5 cut(s) 93, 144, 174, 419, 757
DpnII GATC 5 cut(s) 91, 142, 172, 417, 755
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 4 cut(s) 43, 147, 540, 595
EarI CTCTTC 4 cut(s) 43, 147, 540, 595
Ecl136II GAGCTC 1 cut(s) 806
Eco130I CCWWGG 3 cut(s) 233, 483, 615
Eco147I AGGCCT 1 cut(s) 773
Eco24I GRGCYC 3 cut(s) 471, 615, 808
Eco47I GGWCC 4 cut(s) 24, 326, 391, 705
Eco47III AGCGCT 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 806
Eco57I CTGAAG 3 cut(s) 102, 230, 717
Eco88I CYCGRG 2 cut(s) 317, 330
EcoICRI GAGCTC 1 cut(s) 806
EcoO109I RGGNCCY 2 cut(s) 24, 391
EcoRII CCWGG 1 cut(s) 263
EcoT14I CCWWGG 3 cut(s) 233, 483, 615
EcoT38I GRGCYC 3 cut(s) 471, 615, 808
ErhI CCWWGG 3 cut(s) 233, 483, 615
FaeI CATG 9 cut(s) 19, 98, 173, 197, 203, 371, 724, 730, 784
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FaqI GGGAC 1 cut(s) 404
FatI CATG 9 cut(s) 15, 94, 169, 193, 199, 367, 720, 726, 780
FauI CCCGC 1 cut(s) 655
FbaI TGATCA 3 cut(s) 91, 142, 172
FokI GGATG 2 cut(s) 109, 165
FriOI GRGCYC 3 cut(s) 471, 615, 808
FspBI CTAG 2 cut(s) 357, 542
GlaI GCGC 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 4 cut(s) 198, 613, 734, 773
HhaI GCGC 1 cut(s) 103
Hin1II CATG 9 cut(s) 19, 98, 173, 197, 203, 371, 724, 730, 784
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HindIII AAGCTT 1 cut(s) 109
HinfI GANTC 3 cut(s) 35, 764, 834
HphI GGTGA 2 cut(s) 274, 725
Hpy166II GTNNAC 1 cut(s) 716
Hpy188I TCNGA 3 cut(s) 534, 709, 769
Hpy188III TCNNGA 5 cut(s) 146, 385, 452, 759, 809
Hpy8I GTNNAC 1 cut(s) 716
HpyAV CCTTC 3 cut(s) 298, 619, 784
HpyCH4III ACNGT 2 cut(s) 10, 302
HpyCH4V TGCA 7 cut(s) 31, 209, 257, 380, 570, 593, 683
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 215, 218, 547
HpyF3I CTNAG 3 cut(s) 533, 768, 815
Hsp92II CATG 9 cut(s) 19, 98, 173, 197, 203, 371, 724, 730, 784
HspAI GCGC 1 cut(s) 101
KflI GGGWCCC 1 cut(s) 391
Ksp22I TGATCA 3 cut(s) 91, 142, 172
Kzo9I GATC 5 cut(s) 91, 142, 172, 417, 755
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 4 cut(s) 273, 643, 803, 811
Lsp1109I GCAGC 9 cut(s) 193, 221, 224, 230, 241, 263, 525, 664, 667
LweI GCATC 1 cut(s) 470
MaeI CTAG 2 cut(s) 357, 542
MaeIII GTNAC 1 cut(s) 491
MalI GATC 5 cut(s) 93, 144, 174, 419, 757
MboI GATC 5 cut(s) 91, 142, 172, 417, 755
MboII GAAGA 9 cut(s) 16, 30, 95, 164, 169, 518, 557, 612, 710
MflI RGATCY 1 cut(s) 755
MhlI GDGCHC 3 cut(s) 471, 615, 808
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 3 cut(s) 397, 477, 648
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 2 cut(s) 29, 758
MmeI TCCRAC 1 cut(s) 733
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
MslI CAYNNNNRTG 2 cut(s) 198, 725
Msp20I TGGCCA 1 cut(s) 198
MspA1I CMGCKG 3 cut(s) 215, 254, 677
MspR9I CCNGG 1 cut(s) 265
Mva1269I GAATGC 1 cut(s) 380
MvaI CCWGG 1 cut(s) 265
MwoI GCNNNNNNNGC 4 cut(s) 212, 215, 218, 547
NdeII GATC 5 cut(s) 91, 142, 172, 417, 755
NlaIII CATG 9 cut(s) 19, 98, 173, 197, 203, 371, 724, 730, 784
NlaIV GGNNCC 9 cut(s) 269, 328, 343, 392, 393, 613, 645, 706, 757
NmuCI GTSAC 1 cut(s) 491
PceI AGGCCT 1 cut(s) 773
PciSI GCTCTTC 1 cut(s) 540
PctI GAATGC 1 cut(s) 380
PflMI CCANNNNNTGG 3 cut(s) 194, 440, 621
PleI GAGTC 2 cut(s) 29, 758
PpsI GAGTC 2 cut(s) 29, 758
PpuMI RGGWCCY 2 cut(s) 24, 391
Psp124BI GAGCTC 1 cut(s) 808
Psp5II RGGWCCY 2 cut(s) 24, 391
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 9 cut(s) 269, 328, 343, 392, 393, 613, 645, 706, 757
PspOMI GGGCCC 1 cut(s) 611
PspPI GGNCC 7 cut(s) 24, 326, 391, 611, 612, 705, 732
PspPPI RGGWCCY 2 cut(s) 24, 391
PsrI GAACNNNNNNTAC 2 cut(s) 286, 318
PstI CTGCAG 3 cut(s) 211, 259, 685
PstNI CAGNNNCTG 1 cut(s) 680
PsuI RGATCY 1 cut(s) 755
PvuII CAGCTG 2 cut(s) 254, 677
RsaI GTAC 3 cut(s) 79, 372, 725
RsaNI GTAC 3 cut(s) 78, 371, 724
RseI CAYNNNNRTG 2 cut(s) 198, 725
SacI GAGCTC 1 cut(s) 808
SapI GCTCTTC 1 cut(s) 540
Sau3AI GATC 5 cut(s) 91, 142, 172, 417, 755
Sau96I GGNCC 7 cut(s) 24, 326, 391, 611, 612, 705, 732
SchI GAGTC 2 cut(s) 29, 758
ScrFI CCNGG 1 cut(s) 265
SduI GDGCHC 3 cut(s) 471, 615, 808
SfaNI GCATC 1 cut(s) 470
SfcI CTRYAG 3 cut(s) 207, 255, 681
SinI GGWCC 4 cut(s) 24, 326, 391, 705
SmiMI CAYNNNNRTG 2 cut(s) 198, 725
Sse9I AATT 3 cut(s) 397, 477, 648
SseBI AGGCCT 1 cut(s) 773
SsiI CCGC 3 cut(s) 215, 285, 662
SspMI CTAG 2 cut(s) 357, 542
SstI GAGCTC 1 cut(s) 808
StuI AGGCCT 1 cut(s) 773
StyD4I CCNGG 1 cut(s) 263
StyI CCWWGG 3 cut(s) 233, 483, 615
TaaI ACNGT 2 cut(s) 10, 302
TaqI TCGA 4 cut(s) 305, 420, 451, 832
TasI AATT 3 cut(s) 397, 477, 648
TatI WGTACW 2 cut(s) 370, 723
TauI GCSGC 1 cut(s) 218
TscAI CASTG 4 cut(s) 15, 65, 264, 445
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 9 cut(s) 206, 209, 212, 218, 251, 254, 538, 677, 680
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 4 cut(s) 17, 527, 705, 800
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 4 cut(s) 15, 65, 264, 445
Van91I CCANNNNNTGG 3 cut(s) 194, 440, 621
VpaK11BI GGWCC 4 cut(s) 24, 326, 391, 705
XapI RAATTY 1 cut(s) 397
XspI CTAG 2 cut(s) 357, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.