AT5G23240

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014546
Physical Location & Seq
Reverse (-)
7826732 .. 7828724
1993 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23240.1

Sequence Viewer

Length: 1398 bp
ATGACACCGGCTATTTTTTCTCCGACGACTCTTCCTCCATCAACTGCTACATGGCCATGTTCAACATCTCAGAAGCTCATCACCGTTAGATCACCACTCAAGTTCAAGTGTAGAGCAACTTCATCATCATCGTCTATCACTGACTTTGATCTTTATGACCTCTTGGGTATTGATCGAAGTTCTGATAAGTCTCAGATCAAATCAGCCTATCGTGCGTTGCAGAAACGATGTCATCCAGATATCGCAGGAGATCCCGGTCATGATATGGCCATCATTCTTAACGAGGCTTACCAGCTTCTCTCTGATCCGATCTCGCGCCAAGCCTATGACAAGGAGCAAGCAAAACTAGAAGAACTCAGAGGCTATACAGGGAAACCGATATACTCGGTTTGGTGTGGACCAGAAACAGAGCAACGAGCTGCGTTTGTGGACGAGGTTAAGTGTGTTGGGTGTTTGAAGTGTGCTTTGTGTGCAGAGAAAACATTTGCTATTGAAACTGCTTACGGGAGAGCGAGGGTTGTTGCTCAATGGGCTGATCCTGAATCCAAAATCAAAGAAGCCATCGAAGCTTGCCCTGTAGACTGCATTTCAATGGTGGAGAGATCTGACCTTGCTCCATTGGAGTTCCTTATGTCAAAGCAACCACGAGGCAACGTGAGGATCGGGGTTGGAAACACGGTTGGTGAGCGTGTCTCCAATGTATTTGTTGATGTCAAGAAGTTCCAAGAAAGATACGCTAAAGCTATGAGCAGAACCACAAAAGAGACCTCCCAGAGAGAAGTACAAATAAGTGCAGTAGAGGCGATTAGGTCCATTTCCAATTGGCTATACTGGAGATCATCACCGTACACGAAACCATTGAGTCCAGAATCAAACATGAGTCTAACTTTTACCAAAAGAAAGAAAGCTGTTGATCCAGATATCAGAAAGCTTCAAGATGTTGTGGCAGCAATGAAACAAGCAGACCAAAGCGGAAGAACCAAAGAGAAAGGATCAGCTTACTTGCTTGGAGAAGATTACTGGAGTCCATCAAACGCTGCTCTTCCCTCATCTGGAAACAACAACGGTTCCAAAGCTAGCTCGAATCCGCAAGTGACTCGTAAGACATTTCCTTCAGAAGAGAAACCAACTAGTAGAAGAGAAAATAGAAGACAGTTCAGGATAAAGAAATTTCCAATTGGGACAGCCATAGTAGCAGTATTCTTGGTTCAGTACCAAGCAAGTTACAGAGCCGCCTCTGAGCTCAACGACCATATCGGCGGCTCGCTGGCTTTATCCATAGTTAACAGTCCATGGCAGCAGATATTGTTAGCAGGAGTTACATGGTACTTCATTGGAGCAATGTTACTCCAACTTGTGGAAGCTGTTCAACACAAGCTAGAAGATAAAGAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_13

Protein Analysis

465

Amino Acids

51.76

Weight (kDa)

9.1

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 50 - 110 2.1e-15 DnaJ domain
Fer4_13 PF13370 143 - 197 8.7e-13 4Fe-4S single cluster domain of Ferredoxin I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23240
fragaria_vesca FvH4_4g37080
malus_domestica MD13G1003800.v1.1
prunus_persica Prupe.1G348700_v2.0.a1
pyrus_communis pycom13g00320
rosa_chinensis RchiOBHm_Chr4g0446831
rosa_laevigata RLG00000005626
rosa_multiflora Rmu_co8372733.1_g000001 Rmu_sc0001753.1_g000016 Rmu_sc0001753.1_g000019
rosa_roxburghii Rroxscaffold_5G00387200
rosa_rugosa Rorug04G0375000
rosa_samantha Rh4AG436500 Rh4BG445600 Rh4CG462900 Rh4DG444300
rosa_wichuraiana Rw4G037340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1357
AccI GTMKAC 1 cut(s) 579
AccII CGCG 1 cut(s) 316
AciI CCGC 4 cut(s) 972, 1088, 1233, 1260
AclWI GGATC 6 cut(s) 245, 299, 530, 668, 908, 1000
AcoI YGGCCR 2 cut(s) 53, 267
AcsI RAATTY 1 cut(s) 1169
AcuI CTGAAG 1 cut(s) 1098
AfaI GTAC 4 cut(s) 783, 848, 1214, 1328
AfiI CCNNNNNNNGG 2 cut(s) 1052, 1357
AgsI TTSAA 7 cut(s) 63, 106, 457, 494, 591, 935, 1370
AhlI ACTAGT 1 cut(s) 1130
Alw21I GWGCWC 1 cut(s) 1245
Alw26I GTCTC 3 cut(s) 195, 697, 758
AlwI GGATC 6 cut(s) 245, 299, 530, 668, 908, 1000
AoxI GGCC 2 cut(s) 53, 267
ApeKI GCWGC 4 cut(s) 419, 947, 1037, 1297
ApoI RAATTY 1 cut(s) 1169
Asp700I GAANNNNTTC 1 cut(s) 1365
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 398, 810
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 4 cut(s) 73, 84, 695, 834
AsuNHI GCTAGC 1 cut(s) 1076
AvaII GGWCC 2 cut(s) 398, 810
BalI TGGCCA 2 cut(s) 55, 269
BanII GRGCYC 1 cut(s) 1245
BarI GAAGNNNNNNTAC 2 cut(s) 103, 135
BauI CACGAG 1 cut(s) 645
BbsI GAAGAC 1 cut(s) 1156
Bbv12I GWGCWC 1 cut(s) 1245
BbvI GCAGC 4 cut(s) 406, 959, 1024, 1309
BccI CCATC 4 cut(s) 46, 278, 569, 1036
BcgI CGANNNNNNTGC 2 cut(s) 1079, 1113
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 3 cut(s) 195, 697, 758
BcuI ACTAGT 1 cut(s) 1130
BfaI CTAG 4 cut(s) 347, 1077, 1131, 1379
BfmI CTRYAG 1 cut(s) 576
BglII AGATCT 1 cut(s) 602
BisI GCNGC 6 cut(s) 420, 948, 1038, 1233, 1261, 1298
BlsI GCNGC 6 cut(s) 421, 949, 1039, 1234, 1262, 1299
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 2 cut(s) 398, 810
BmgT120I GGNCC 2 cut(s) 398, 810
BmiI GGNNCC 1 cut(s) 1069
BmrFI CCNGG 1 cut(s) 255
BmtI GCTAGC 1 cut(s) 1080
BpiI GAAGAC 1 cut(s) 1156
BplI GAGNNNNNCTC 2 cut(s) 677, 709
BpmI CTGGAG 2 cut(s) 853, 1042
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 758
BsaJI CCNNGG 1 cut(s) 1292
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 2 cut(s) 1052, 1357
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 2 cut(s) 836, 1025
Bse3DI GCAATG 2 cut(s) 957, 1347
BseDI CCNNGG 1 cut(s) 1292
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 2 cut(s) 1052, 1357
BseMI GCAATG 2 cut(s) 957, 1347
BseMII CTCAG 4 cut(s) 83, 206, 370, 1230
BseNI ACTGG 2 cut(s) 836, 1025
BseXI GCAGC 4 cut(s) 406, 959, 1024, 1309
BsgI GTGCAG 2 cut(s) 492, 813
Bsh1236I CGCG 1 cut(s) 316
BshFI GGCC 2 cut(s) 55, 269
BsiHKAI GWGCWC 1 cut(s) 1245
BsiSI CCGG 2 cut(s) 8, 255
BslFI GGGAC 1 cut(s) 1195
BslI CCNNNNNNNGG 2 cut(s) 1052, 1357
BsmAI GTCTC 3 cut(s) 195, 697, 758
BsmFI GGGAC 1 cut(s) 1195
BsnI GGCC 2 cut(s) 55, 269
Bso31I GGTCTC 1 cut(s) 758
Bsp1286I GDGCHC 1 cut(s) 1245
Bsp19I CCATGG 1 cut(s) 1292
BspACI CCGC 4 cut(s) 972, 1088, 1233, 1260
BspANI GGCC 2 cut(s) 55, 269
BspCNI CTCAG 4 cut(s) 82, 205, 369, 1231
BspFNI CGCG 1 cut(s) 316
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 1069
BspOI GCTAGC 1 cut(s) 1080
BspPI GGATC 6 cut(s) 245, 299, 530, 668, 908, 1000
BspQI GCTCTTC 1 cut(s) 1047
BspTNI GGTCTC 1 cut(s) 758
BsrDI GCAATG 2 cut(s) 957, 1347
BsrFI RCCGGY 1 cut(s) 7
BsrI ACTGG 2 cut(s) 836, 1025
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 1292
BssSI CACGAG 1 cut(s) 645
BssT1I CCWWGG 1 cut(s) 1292
Bst2BI CACGAG 1 cut(s) 645
Bst4CI ACNGT 6 cut(s) 85, 679, 846, 1067, 1155, 1289
Bst6I CTCTTC 4 cut(s) 36, 1047, 1113, 1132
BstC8I GCNNGC 5 cut(s) 339, 571, 1078, 1265, 1269
BstDEI CTNAG 4 cut(s) 69, 192, 356, 1239
BstDSI CCRYGG 1 cut(s) 1292
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 1 cut(s) 316
BstHHI GCGC 1 cut(s) 318
BstMAI GTCTC 3 cut(s) 195, 697, 758
BstMWI GCNNNNNNNGC 6 cut(s) 212, 470, 530, 566, 800, 1193
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 576
BstUI CGCG 1 cut(s) 316
BstV1I GCAGC 4 cut(s) 406, 959, 1024, 1309
BstV2I GAAGAC 1 cut(s) 1156
BstX2I RGATCY 2 cut(s) 250, 602
BstYI RGATCY 2 cut(s) 250, 602
BsuRI GGCC 2 cut(s) 55, 269
BtgI CCRYGG 1 cut(s) 1292
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 5 cut(s) 339, 571, 1078, 1265, 1269
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 398, 810
Csp6I GTAC 4 cut(s) 782, 847, 1213, 1327
CviAII CATG 6 cut(s) 51, 57, 260, 877, 1293, 1323
CviQI GTAC 4 cut(s) 782, 847, 1213, 1327
DdeI CTNAG 4 cut(s) 69, 192, 356, 1239
EaeI YGGCCR 2 cut(s) 53, 267
Eam1104I CTCTTC 4 cut(s) 36, 1047, 1113, 1132
EarI CTCTTC 4 cut(s) 36, 1047, 1113, 1132
Ecl136II GAGCTC 1 cut(s) 1243
Eco130I CCWWGG 1 cut(s) 1292
Eco24I GRGCYC 1 cut(s) 1245
Eco31I GGTCTC 1 cut(s) 758
Eco32I GATATC 2 cut(s) 241, 922
Eco47I GGWCC 2 cut(s) 398, 810
Eco53kI GAGCTC 1 cut(s) 1243
Eco57I CTGAAG 1 cut(s) 1098
EcoICRI GAGCTC 1 cut(s) 1243
EcoRV GATATC 2 cut(s) 241, 922
EcoT14I CCWWGG 1 cut(s) 1292
EcoT38I GRGCYC 1 cut(s) 1245
ErhI CCWWGG 1 cut(s) 1292
FaeI CATG 6 cut(s) 54, 60, 263, 880, 1296, 1326
FaqI GGGAC 1 cut(s) 1195
FatI CATG 6 cut(s) 50, 56, 259, 876, 1292, 1322
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 6 cut(s) 420, 948, 1038, 1233, 1261, 1298
FokI GGATG 1 cut(s) 219
FriOI GRGCYC 1 cut(s) 1245
Fsp4HI GCNGC 6 cut(s) 420, 948, 1038, 1233, 1261, 1298
FspBI CTAG 4 cut(s) 347, 1077, 1131, 1379
GlaI GCGC 1 cut(s) 317
GluI GCNGC 6 cut(s) 420, 948, 1038, 1233, 1261, 1298
GsuI CTGGAG 2 cut(s) 853, 1042
HaeIII GGCC 2 cut(s) 55, 269
HapII CCGG 2 cut(s) 8, 255
HhaI GCGC 1 cut(s) 318
Hin1II CATG 6 cut(s) 54, 60, 263, 880, 1296, 1326
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HincII GTYRAC 1 cut(s) 1285
HindII GTYRAC 1 cut(s) 1285
HindIII AAGCTT 2 cut(s) 567, 929
HinfI GANTC 8 cut(s) 28, 542, 862, 869, 880, 1024, 1084, 1096
HpaI GTTAAC 1 cut(s) 1285
HpaII CCGG 2 cut(s) 8, 255
HphI GGTGA 4 cut(s) 73, 84, 695, 834
Hpy166II GTNNAC 5 cut(s) 398, 430, 580, 849, 1285
Hpy188III TCNNGA 9 cut(s) 236, 260, 539, 715, 866, 917, 935, 1053, 1159
Hpy8I GTNNAC 5 cut(s) 398, 430, 580, 849, 1285
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 1122
HpyCH4III ACNGT 6 cut(s) 85, 679, 846, 1067, 1155, 1289
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 4 cut(s) 220, 473, 585, 794
HpyF10VI GCNNNNNNNGC 6 cut(s) 212, 470, 530, 566, 800, 1193
HpyF3I CTNAG 4 cut(s) 69, 192, 356, 1239
HpySE526I ACGT 1 cut(s) 654
Hsp92II CATG 6 cut(s) 54, 60, 263, 880, 1296, 1326
HspAI GCGC 1 cut(s) 316
KspAI GTTAAC 1 cut(s) 1285
LguI GCTCTTC 1 cut(s) 1047
LmnI GCTCC 3 cut(s) 334, 619, 1337
Lsp1109I GCAGC 4 cut(s) 406, 959, 1024, 1309
MaeI CTAG 4 cut(s) 347, 1077, 1131, 1379
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 4 cut(s) 1093, 1223, 1318, 1344
MboII GAAGA 9 cut(s) 23, 362, 987, 1025, 1034, 1130, 1149, 1161, 1394
MfeI CAATTG 2 cut(s) 820, 1176
MflI RGATCY 2 cut(s) 250, 602
MhlI GDGCHC 1 cut(s) 1245
MlsI TGGCCA 2 cut(s) 55, 269
MluCI AATT 3 cut(s) 820, 1169, 1176
MluNI TGGCCA 2 cut(s) 55, 269
MlyI GAGTC 5 cut(s) 22, 871, 889, 1033, 1090
MmeI TCCRAC 3 cut(s) 47, 649, 1375
Mox20I TGGCCA 2 cut(s) 55, 269
MroXI GAANNNNTTC 1 cut(s) 1365
MscI TGGCCA 2 cut(s) 55, 269
MseI TTAA 3 cut(s) 279, 438, 1284
MslI CAYNNNNRTG 2 cut(s) 55, 590
Msp20I TGGCCA 2 cut(s) 55, 269
MspI CCGG 2 cut(s) 8, 255
MspR9I CCNGG 1 cut(s) 255
MunI CAATTG 2 cut(s) 820, 1176
MvnI CGCG 1 cut(s) 316
MwoI GCNNNNNNNGC 6 cut(s) 212, 470, 530, 566, 800, 1193
NciI CCSGG 1 cut(s) 255
NcoI CCATGG 1 cut(s) 1292
NheI GCTAGC 1 cut(s) 1076
NlaIII CATG 6 cut(s) 54, 60, 263, 880, 1296, 1326
NlaIV GGNNCC 1 cut(s) 1069
NmuCI GTSAC 1 cut(s) 1093
PagI TCATGA 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 1047
PdmI GAANNNNTTC 1 cut(s) 1365
PfeI GAWTC 3 cut(s) 542, 869, 1084
PflMI CCANNNNNTGG 1 cut(s) 1357
PkrI GCNGC 6 cut(s) 421, 949, 1039, 1234, 1262, 1299
PleI GAGTC 5 cut(s) 22, 870, 888, 1032, 1090
PpsI GAGTC 5 cut(s) 22, 870, 888, 1032, 1090
Psp124BI GAGCTC 1 cut(s) 1245
PspN4I GGNNCC 1 cut(s) 1069
PspPI GGNCC 2 cut(s) 398, 810
PsrI GAACNNNNNNTAC 2 cut(s) 1191, 1223
PsuI RGATCY 2 cut(s) 250, 602
RsaI GTAC 4 cut(s) 783, 848, 1214, 1328
RsaNI GTAC 4 cut(s) 782, 847, 1213, 1327
RseI CAYNNNNRTG 2 cut(s) 55, 590
SacI GAGCTC 1 cut(s) 1245
SapI GCTCTTC 1 cut(s) 1047
SaqAI TTAA 3 cut(s) 279, 438, 1284
SatI GCNGC 6 cut(s) 420, 948, 1038, 1233, 1261, 1298
Sau96I GGNCC 2 cut(s) 398, 810
SchI GAGTC 5 cut(s) 22, 871, 889, 1033, 1090
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 1245
SfcI CTRYAG 1 cut(s) 576
SinI GGWCC 2 cut(s) 398, 810
SmiMI CAYNNNNRTG 2 cut(s) 55, 590
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SpeI ACTAGT 1 cut(s) 1130
Sse9I AATT 3 cut(s) 820, 1169, 1176
SsiI CCGC 4 cut(s) 972, 1088, 1233, 1260
SspMI CTAG 4 cut(s) 347, 1077, 1131, 1379
SstI GAGCTC 1 cut(s) 1245
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 1292
TaaI ACNGT 6 cut(s) 85, 679, 846, 1067, 1155, 1289
TaiI ACGT 1 cut(s) 657
TaqI TCGA 3 cut(s) 175, 564, 1082
TasI AATT 3 cut(s) 820, 1169, 1176
TatI WGTACW 1 cut(s) 781
TauI GCSGC 2 cut(s) 1235, 1263
TfiI GAWTC 3 cut(s) 542, 869, 1084
Tru1I TTAA 3 cut(s) 279, 438, 1284
Tru9I TTAA 3 cut(s) 279, 438, 1284
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 1093
TseI GCWGC 4 cut(s) 419, 947, 1037, 1297
Tsp45I GTSAC 1 cut(s) 1093
TspDTI ATGAA 3 cut(s) 111, 968, 1321
TspRI CASTG 1 cut(s) 145
Van91I CCANNNNNTGG 1 cut(s) 1357
VpaK11BI GGWCC 2 cut(s) 398, 810
XapI RAATTY 1 cut(s) 1169
XmiI GTMKAC 1 cut(s) 579
XmnI GAANNNNTTC 1 cut(s) 1365
XspI CTAG 4 cut(s) 347, 1077, 1131, 1379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.