Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014546

Physical Location & Seq

Genomic Coordinates Forward (+)

54538948 .. 54539514

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0375000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCTGCTACGTGGCGCAATCTCCGCCCCTCTCCCTTCTCTCCGCCTGAGAACCACGGCAGCTCCGCCTCAAAACGTCGCCGTTTCGTGGCATTCCCCAACCAACAAGTACTCGATCTCCGACCAGGACCTCGACTCCCGCGGCTTCCTCCTCCACCGCACCACCGCCGACCTCAACCTCGACCACCTCAACAAGGTCTTCGTCGCCGTCGGTTTCCCCAAGCGGGACCCGGCCAAGATCCGGATCGCGCTGGACCACACCGACTCCCTCCTCTGGCTCGAGTACGCCAAGACCAACCGCCCCGTCGCCTTCGCCAGGGCCACCGGCGACGGCGTCTTCAACGCCATCATATGGGACGTCGTCGTCGACCCCTCCTTTCAGGGGATCGGGCTGGGCCGGGCCGTGATGGAGCGCCTCGTGGAGGAGCTCGTCGATAAGGGCATCGGGAATATCGCTTTGTATTCGGAGCCCCGGGTTCTCGGGTTTTATCGGCCCTTGGGCTTTGTGGCCGACCCGGATGGGATCCGCGGAATGGTGTATTCCAGAAAGCCCAAGAAGCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Fer4_13

Protein Analysis

188

Amino Acids

20.83

Weight (kDa)

9.69

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	84 - 168	6.9e-13	Acetyltransferase (GNAT) family
Acetyltransf_10	PF13673	86 - 171	2e-07	Acetyltransferase (GNAT) domain
Acetyltransf_7	PF13508	96 - 169	3.4e-09	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23240
fragaria_vesca	FvH4_4g37080
malus_domestica	MD13G1003800.v1.1
prunus_persica	Prupe.1G348700_v2.0.a1
pyrus_communis	pycom13g00320
rosa_chinensis	RchiOBHm_Chr4g0446831
rosa_laevigata	RLG00000005626
rosa_multiflora	Rmu_co8372733.1_g000001 Rmu_sc0001753.1_g000016 Rmu_sc0001753.1_g000019
rosa_roxburghii	Rroxscaffold_5G00387200
rosa_rugosa	Rorug04G0375000
rosa_samantha	Rh4AG436500 Rh4BG445600 Rh4CG462900 Rh4DG444300
rosa_wichuraiana	Rw4G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AatII	GACGTC	1 cut(s)	360
AccB7I	CCANNNNNTGG	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	3 cut(s)	141, 248, 528
AccIII	TCCGGA	1 cut(s)	240
AclWI	GGATC	5 cut(s)	232, 251, 392, 517, 530
AcoI	YGGCCR	2 cut(s)	231, 507
AcyI	GRCGYC	2 cut(s)	333, 357
AfaI	GTAC	2 cut(s)	110, 284
AgsI	TTSAA	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	123, 314
AluBI	AGCT	2 cut(s)	62, 427
AluI	AGCT	2 cut(s)	62, 427
Alw21I	GWGCWC	1 cut(s)	429
AlwI	GGATC	5 cut(s)	232, 251, 392, 517, 530
Ama87I	CYCGRG	3 cut(s)	278, 471, 479
Aor13HI	TCCGGA	1 cut(s)	240
AoxI	GGCC	6 cut(s)	231, 318, 394, 399, 491, 507
ApeKI	GCWGC	2 cut(s)	4, 59
AspLEI	GCGC	3 cut(s)	17, 250, 414
AspS9I	GGNCC	7 cut(s)	127, 226, 253, 318, 394, 399, 492
AsuC2I	CCSGG	5 cut(s)	230, 398, 472, 473, 515
AvaI	CYCGRG	3 cut(s)	278, 471, 479
AvaII	GGWCC	3 cut(s)	127, 226, 253
BamHI	GGATCC	1 cut(s)	522
BanII	GRGCYC	2 cut(s)	429, 471
BauI	CACGAG	1 cut(s)	416
BbsI	GAAGAC	2 cut(s)	190, 328
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	3 cut(s)	353, 400, 512
BceAI	ACGGC	5 cut(s)	65, 72, 191, 346, 386
BciT130I	CCWGG	2 cut(s)	125, 316
BcnI	CCSGG	5 cut(s)	230, 398, 472, 473, 515
BfoI	RGCGCY	1 cut(s)	415
BisI	GCNGC	3 cut(s)	5, 60, 142
BlsI	GCNGC	3 cut(s)	6, 61, 143
BmcAI	AGTACT	1 cut(s)	110
Bme1390I	CCNGG	7 cut(s)	125, 230, 316, 398, 472, 473, 515
Bme18I	GGWCC	3 cut(s)	127, 226, 253
BmeT110I	CYCGRG	3 cut(s)	278, 471, 479
BmgT120I	GGNCC	7 cut(s)	127, 226, 253, 318, 394, 399, 492
BmiI	GGNNCC	4 cut(s)	227, 228, 468, 524
BmrFI	CCNGG	7 cut(s)	125, 230, 316, 398, 472, 473, 515
BmsI	GCATC	1 cut(s)	450
BpiI	GAAGAC	2 cut(s)	190, 328
BpuMI	CCSGG	5 cut(s)	230, 398, 472, 473, 515
BsaAI	YACGTR	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	242
BsaHI	GRCGYC	2 cut(s)	333, 357
BsaJI	CCNNGG	7 cut(s)	54, 139, 315, 470, 471, 495, 526
BsaWI	WCCGGW	1 cut(s)	240
BsaXI	ACNNNNNCTCC	8 cut(s)	46, 76, 101, 119, 131, 149, 248, 278
Bse118I	RCCGGY	1 cut(s)	323
Bse8I	GATNNNNATC	1 cut(s)	242
BseAI	TCCGGA	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	125, 316
BseDI	CCNNGG	7 cut(s)	54, 139, 315, 470, 471, 495, 526
BseGI	GGATG	1 cut(s)	523
BseJI	GATNNNNATC	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	38
BseRI	GAGGAG	3 cut(s)	140, 260, 437
BseXI	GCAGC	1 cut(s)	71
BseYI	CCCAGC	1 cut(s)	391
Bsh1236I	CGCG	3 cut(s)	141, 248, 528
BshFI	GGCC	6 cut(s)	233, 320, 396, 401, 493, 509
BsiHKAI	GWGCWC	1 cut(s)	429
BsiHKCI	CYCGRG	3 cut(s)	278, 471, 479
BsiSI	CCGG	6 cut(s)	230, 241, 324, 397, 472, 515
BslFI	GGGAC	2 cut(s)	239, 368
BsmFI	GGGAC	2 cut(s)	239, 368
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	6 cut(s)	233, 320, 396, 401, 493, 509
BsoBI	CYCGRG	3 cut(s)	278, 471, 479
Bsp1286I	GDGCHC	2 cut(s)	429, 471
Bsp13I	TCCGGA	1 cut(s)	240
Bsp143I	GATC	5 cut(s)	114, 237, 243, 384, 522
BspANI	GGCC	6 cut(s)	233, 320, 396, 401, 493, 509
BspCNI	CTCAG	1 cut(s)	39
BspEI	TCCGGA	1 cut(s)	240
BspFNI	CGCG	3 cut(s)	141, 248, 528
BspLI	GGNNCC	4 cut(s)	227, 228, 468, 524
BspPI	GGATC	5 cut(s)	232, 251, 392, 517, 530
BsrFI	RCCGGY	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	7 cut(s)	54, 139, 315, 470, 471, 495, 526
BssMI	GATC	5 cut(s)	114, 237, 243, 384, 522
BssNI	GRCGYC	2 cut(s)	333, 357
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	2 cut(s)	125, 316
BstACI	GRCGYC	2 cut(s)	333, 357
BstBAI	YACGTR	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	3 cut(s)	54, 139, 526
BstENI	CCTNNNNNAGG	3 cut(s)	191, 313, 419
BstF5I	GGATG	1 cut(s)	523
BstFNI	CGCG	3 cut(s)	141, 248, 528
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	3 cut(s)	17, 250, 414
BstKTI	GATC	5 cut(s)	117, 240, 246, 387, 525
BstMBI	GATC	5 cut(s)	114, 237, 243, 384, 522
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 556
BstNI	CCWGG	2 cut(s)	125, 316
BstSCI	CCNGG	7 cut(s)	123, 228, 314, 396, 470, 471, 513
BstUI	CGCG	3 cut(s)	141, 248, 528
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	2 cut(s)	190, 328
BstX2I	RGATCY	2 cut(s)	237, 522
BstYI	RGATCY	2 cut(s)	237, 522
BsuRI	GGCC	6 cut(s)	233, 320, 396, 401, 493, 509
BtgI	CCRYGG	3 cut(s)	54, 139, 526
BtsCI	GGATG	1 cut(s)	523
CfoI	GCGC	3 cut(s)	17, 250, 414
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	7 cut(s)	127, 226, 253, 318, 394, 399, 492
Cfr42I	CCGCGG	2 cut(s)	142, 529
Cfr9I	CCCGGG	1 cut(s)	471
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	109, 283
CviQI	GTAC	2 cut(s)	109, 283
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	5 cut(s)	116, 239, 245, 386, 524
DpnII	GATC	5 cut(s)	114, 237, 243, 384, 522
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	2 cut(s)	231, 507
EciI	GGCGGA	3 cut(s)	13, 32, 54
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	2 cut(s)	429, 471
Eco47I	GGWCC	3 cut(s)	127, 226, 253
Eco53kI	GAGCTC	1 cut(s)	427
Eco88I	CYCGRG	3 cut(s)	278, 471, 479
EcoICRI	GAGCTC	1 cut(s)	427
EcoNI	CCTNNNNNAGG	3 cut(s)	191, 313, 419
EcoO109I	RGGNCCY	2 cut(s)	127, 226
EcoRII	CCWGG	2 cut(s)	123, 314
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	2 cut(s)	429, 471
ErhI	CCWWGG	1 cut(s)	495
FaiI	YATR	2 cut(s)	350, 352
FaqI	GGGAC	2 cut(s)	239, 368
FauI	CCCGC	2 cut(s)	146, 216
FauNDI	CATATG	1 cut(s)	350
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	3 cut(s)	5, 60, 142
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	2 cut(s)	429, 471
Fsp4HI	GCNGC	3 cut(s)	5, 60, 142
GlaI	GCGC	3 cut(s)	16, 249, 413
GluI	GCNGC	3 cut(s)	5, 60, 142
GsaI	CCCAGC	1 cut(s)	395
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	6 cut(s)	233, 320, 396, 401, 493, 509
HapII	CCGG	6 cut(s)	230, 241, 324, 397, 472, 515
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	3 cut(s)	17, 250, 414
Hin1I	GRCGYC	2 cut(s)	333, 357
Hin6I	GCGC	3 cut(s)	15, 248, 412
HinP1I	GCGC	3 cut(s)	15, 248, 412
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	134, 263
HpaII	CCGG	6 cut(s)	230, 241, 324, 397, 472, 515
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	121, 466
Hpy188III	TCNNGA	3 cut(s)	241, 445, 543
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	9 cut(s)	80, 206, 212, 308, 332, 362, 365, 368, 434
HpyAV	CCTTC	2 cut(s)	45, 319
HpyCH4IV	ACGT	3 cut(s)	10, 75, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 556
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	3 cut(s)	10, 75, 357
Hsp92I	GRCGYC	2 cut(s)	333, 357
HspAI	GCGC	3 cut(s)	15, 248, 412
KflI	GGGWCCC	1 cut(s)	226
Kpn2I	TCCGGA	1 cut(s)	240
KspI	CCGCGG	2 cut(s)	142, 529
Kzo9I	GATC	5 cut(s)	114, 237, 243, 384, 522
LmnI	GCTCC	4 cut(s)	67, 409, 424, 466
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	450
MaeII	ACGT	3 cut(s)	10, 75, 357
MalI	GATC	5 cut(s)	116, 239, 245, 386, 524
MboI	GATC	5 cut(s)	114, 237, 243, 384, 522
MboII	GAAGA	2 cut(s)	190, 328
MflI	RGATCY	2 cut(s)	237, 522
MhlI	GDGCHC	2 cut(s)	429, 471
MlyI	GAGTC	2 cut(s)	128, 257
MmeI	TCCRAC	1 cut(s)	144
MroI	TCCGGA	1 cut(s)	240
MspA1I	CMGCKG	2 cut(s)	141, 528
MspI	CCGG	6 cut(s)	230, 241, 324, 397, 472, 515
MspR9I	CCNGG	7 cut(s)	125, 230, 316, 398, 472, 473, 515
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	2 cut(s)	125, 316
MvnI	CGCG	3 cut(s)	141, 248, 528
MwoI	GCNNNNNNNGC	2 cut(s)	23, 556
NciI	CCSGG	5 cut(s)	230, 398, 472, 473, 515
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	5 cut(s)	114, 237, 243, 384, 522
NlaIV	GGNNCC	4 cut(s)	227, 228, 468, 524
PaeR7I	CTCGAG	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PctI	GAATGC	1 cut(s)	91
PflFI	GACNNNGTC	2 cut(s)	332, 359
PflMI	CCANNNNNTGG	1 cut(s)	351
PkrI	GCNGC	3 cut(s)	6, 61, 143
PleI	GAGTC	2 cut(s)	128, 257
PpsI	GAGTC	2 cut(s)	128, 257
Ppu21I	YACGTR	1 cut(s)	11
PpuMI	RGGWCCY	2 cut(s)	127, 226
Psp124BI	GAGCTC	1 cut(s)	429
Psp5II	RGGWCCY	2 cut(s)	127, 226
Psp6I	CCWGG	2 cut(s)	123, 314
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	2 cut(s)	123, 314
PspN4I	GGNNCC	4 cut(s)	227, 228, 468, 524
PspPI	GGNCC	7 cut(s)	127, 226, 253, 318, 394, 399, 492
PspPPI	RGGWCCY	2 cut(s)	127, 226
PspXI	VCTCGAGB	1 cut(s)	278
PsuI	RGATCY	2 cut(s)	237, 522
PsyI	GACNNNGTC	2 cut(s)	332, 359
RsaI	GTAC	2 cut(s)	110, 284
RsaNI	GTAC	2 cut(s)	109, 283
SacI	GAGCTC	1 cut(s)	429
SacII	CCGCGG	2 cut(s)	142, 529
SalI	GTCGAC	1 cut(s)	365
SatI	GCNGC	3 cut(s)	5, 60, 142
Sau3AI	GATC	5 cut(s)	114, 237, 243, 384, 522
Sau96I	GGNCC	7 cut(s)	127, 226, 253, 318, 394, 399, 492
ScaI	AGTACT	1 cut(s)	110
SchI	GAGTC	2 cut(s)	128, 257
ScrFI	CCNGG	7 cut(s)	125, 230, 316, 398, 472, 473, 515
SduI	GDGCHC	2 cut(s)	429, 471
SfaNI	GCATC	1 cut(s)	450
Sfr274I	CTCGAG	1 cut(s)	278
Sfr303I	CCGCGG	2 cut(s)	142, 529
SgrAI	CRCCGGYG	1 cut(s)	323
SgrBI	CCGCGG	2 cut(s)	142, 529
SinI	GGWCC	3 cut(s)	127, 226, 253
SlaI	CTCGAG	1 cut(s)	278
SmaI	CCCGGG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	7 cut(s)	123, 228, 314, 396, 470, 471, 513
StyI	CCWWGG	1 cut(s)	495
TaiI	ACGT	3 cut(s)	13, 78, 360
TaqI	TCGA	6 cut(s)	113, 132, 180, 279, 366, 432
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	1 cut(s)	144
TseI	GCWGC	2 cut(s)	4, 59
TspMI	CCCGGG	1 cut(s)	471
Tth111I	GACNNNGTC	2 cut(s)	332, 359
Van91I	CCANNNNNTGG	1 cut(s)	351
VpaK11BI	GGWCC	3 cut(s)	127, 226, 253
XagI	CCTNNNNNAGG	3 cut(s)	191, 313, 419
XhoI	CTCGAG	1 cut(s)	278
XmaI	CCCGGG	1 cut(s)	471
XmiI	GTMKAC	1 cut(s)	366
ZraI	GACGTC	1 cut(s)	358
ZrmI	AGTACT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.