Rmu_co8372733.1_g000001

4Fe-4S single cluster domain of Ferredoxin I

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8372733.1
OG0014546
Physical Location & Seq
Reverse (-)
1 .. 1112
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8372733.1_g000001.1.cds

Sequence Viewer

Length: 767 bp
atggggaattcagccggtatacgagtctccaacatctttgttgaggtgaaaaaattcaagacaagattccaagatgcaaaacagaaagcttctgcagagagttctaatgagacagacttacaaagagaagcaagagtatcagcaattcaagccatcagatccatctccaactggttgtattggacaccctttgcaagtgcaggtgaaaccagttccagaagtacaacaaagcctctccaacatttaagactacttgccgcgcataaagaatccagcacagaatctgaaccaaacattggcaagatcagagatgcagctgctgccaggaaacaaccaaaaagaaacagcaaccgccgaacctctgcattgaatggtcacacaagtaacccaggtgatgatgactattggactccattgagcaatgctcttccagctgctgcctcaacctcccaaagcaactccaacatctcgagatcatcagaacctaattcacctgcagcaggtattggtggcaaaagatggaagcaaacaacacctgtaggtgataacattcgaagaaagagcaacccaattagatgggtggctccaatgggaccagcaatggttgcttcatttcttatagctagattacaaggagatgaagttgcaacagttaacggtagtactagtacaggcggtggtggtttgacagaacatgtatatggctctttagcactggacatagtcaacagctcttggttacagatcatattggcagggattacctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_13

Protein Analysis

255

Amino Acids

27.36

Weight (kDa)

10.19

Isoelectric Point (pI)

59.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23240
fragaria_vesca FvH4_4g37080
malus_domestica MD13G1003800.v1.1
prunus_persica Prupe.1G348700_v2.0.a1
pyrus_communis pycom13g00320
rosa_chinensis RchiOBHm_Chr4g0446831
rosa_laevigata RLG00000005626
rosa_multiflora Rmu_co8372733.1_g000001 Rmu_sc0001753.1_g000016 Rmu_sc0001753.1_g000019
rosa_roxburghii Rroxscaffold_5G00387200
rosa_rugosa Rorug04G0375000
rosa_samantha Rh4AG436500 Rh4BG445600 Rh4CG462900 Rh4DG444300
rosa_wichuraiana Rw4G037340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 191, 502
Acc36I ACCTGC 3 cut(s) 191, 491, 502
AccB7I CCANNNNNTGG 1 cut(s) 296
AccI GTMKAC 1 cut(s) 19
AccII CGCG 1 cut(s) 260
AciI CCGC 3 cut(s) 258, 352, 675
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 2 cut(s) 7, 53
AfaI GTAC 3 cut(s) 223, 664, 670
AfiI CCNNNNNNNGG 2 cut(s) 296, 500
AflIII ACRYGT 1 cut(s) 694
AgsI TTSAA 3 cut(s) 58, 149, 370
AhlI ACTAGT 1 cut(s) 665
AjnI CCWGG 2 cut(s) 323, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AluBI AGCT 5 cut(s) 89, 317, 434, 623, 732
AluI AGCT 5 cut(s) 89, 317, 434, 623, 732
Alw26I GTCTC 2 cut(s) 31, 104
AlwI GGATC 1 cut(s) 153
AlwNI CAGNNNCTG 3 cut(s) 284, 320, 437
Ama87I CYCGRG 1 cut(s) 469
ApeKI GCWGC 6 cut(s) 314, 317, 320, 434, 437, 497
ApoI RAATTY 2 cut(s) 7, 53
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 593
AsuHPI GGTGA 5 cut(s) 58, 215, 404, 483, 554
AsuII TTCGAA 1 cut(s) 553
AvaI CYCGRG 1 cut(s) 469
AvaII GGWCC 1 cut(s) 593
BbvI GCAGC 6 cut(s) 304, 307, 326, 421, 424, 509
BccI CCATC 4 cut(s) 161, 170, 513, 570
BciT130I CCWGG 2 cut(s) 325, 390
BcoDI GTCTC 2 cut(s) 31, 104
BcuI ACTAGT 1 cut(s) 665
BfaI CTAG 2 cut(s) 624, 666
BfmI CTRYAG 3 cut(s) 93, 495, 537
BfuAI ACCTGC 3 cut(s) 191, 491, 502
BisI GCNGC 7 cut(s) 258, 315, 318, 321, 435, 438, 498
BlsI GCNGC 7 cut(s) 259, 316, 319, 322, 436, 439, 499
BmcAI AGTACT 1 cut(s) 664
Bme1390I CCNGG 2 cut(s) 325, 390
Bme18I GGWCC 1 cut(s) 593
BmeT110I CYCGRG 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 593
BmiI GGNNCC 2 cut(s) 585, 594
BmrFI CCNGG 2 cut(s) 325, 390
BmsI GCATC 2 cut(s) 64, 301
BplI GAGNNNNNCTC 2 cut(s) 409, 441
Bpu14I TTCGAA 1 cut(s) 553
BsaJI CCNNGG 1 cut(s) 388
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 500
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 3 cut(s) 176, 210, 720
Bse3DI GCAATG 2 cut(s) 427, 606
BseBI CCWGG 2 cut(s) 325, 390
BseDI CCNNGG 1 cut(s) 388
BseLI CCNNNNNNNGG 2 cut(s) 296, 500
BseMI GCAATG 2 cut(s) 427, 606
BseNI ACTGG 3 cut(s) 176, 210, 720
BseXI GCAGC 6 cut(s) 304, 307, 326, 421, 424, 509
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 469
BsiSI CCGG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 606
BslI CCNNNNNNNGG 2 cut(s) 296, 500
BsmAI GTCTC 2 cut(s) 31, 104
BsmFI GGGAC 1 cut(s) 606
BsoBI CYCGRG 1 cut(s) 469
Bsp119I TTCGAA 1 cut(s) 553
Bsp143I GATC 4 cut(s) 158, 303, 473, 744
BspACI CCGC 3 cut(s) 258, 352, 675
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 2 cut(s) 585, 594
BspMAI CTGCAG 2 cut(s) 97, 499
BspMI ACCTGC 3 cut(s) 191, 491, 502
BspPI GGATC 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 432
BspT104I TTCGAA 1 cut(s) 553
BsrDI GCAATG 2 cut(s) 427, 606
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 3 cut(s) 176, 210, 720
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 4 cut(s) 158, 303, 473, 744
BssNAI GTATAC 1 cut(s) 20
Bst1107I GTATAC 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 325, 390
Bst4CI ACNGT 2 cut(s) 652, 659
Bst6I CTCTTC 1 cut(s) 432
BstAPI GCANNNNNTGC 2 cut(s) 320, 605
BstBI TTCGAA 1 cut(s) 553
BstENI CCTNNNNNAGG 1 cut(s) 498
BstFNI CGCG 1 cut(s) 260
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 4 cut(s) 161, 306, 476, 747
BstMAI GTCTC 2 cut(s) 31, 104
BstMBI GATC 4 cut(s) 158, 303, 473, 744
BstMWI GCNNNNNNNGC 4 cut(s) 149, 320, 431, 605
BstNI CCWGG 2 cut(s) 325, 390
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 2 cut(s) 323, 388
BstSFI CTRYAG 3 cut(s) 93, 495, 537
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 6 cut(s) 304, 307, 326, 421, 424, 509
BstX2I RGATCY 1 cut(s) 158
BstXI CCANNNNNNTGG 1 cut(s) 576
BstYI RGATCY 1 cut(s) 158
BstZ17I GTATAC 1 cut(s) 20
BtsIMutI CAGTG 1 cut(s) 713
BveI ACCTGC 3 cut(s) 191, 491, 502
CaiI CAGNNNCTG 3 cut(s) 284, 320, 437
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 593
Csp6I GTAC 3 cut(s) 222, 663, 669
CviAII CATG 1 cut(s) 695
CviQI GTAC 3 cut(s) 222, 663, 669
DpnI GATC 4 cut(s) 160, 305, 475, 746
DpnII GATC 4 cut(s) 158, 303, 473, 744
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 593
Eco88I CYCGRG 1 cut(s) 469
EcoNI CCTNNNNNAGG 1 cut(s) 498
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 323, 388
FaeI CATG 1 cut(s) 698
FaiI YATR 8 cut(s) 20, 264, 620, 696, 700, 702, 722, 749
FaqI GGGAC 1 cut(s) 606
FatI CATG 1 cut(s) 694
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 7 cut(s) 258, 315, 318, 321, 435, 438, 498
Fsp4HI GCNGC 7 cut(s) 258, 315, 318, 321, 435, 438, 498
FspBI CTAG 2 cut(s) 624, 666
GlaI GCGC 1 cut(s) 261
GluI GCNGC 7 cut(s) 258, 315, 318, 321, 435, 438, 498
HapII CCGG 1 cut(s) 15
HhaI GCGC 1 cut(s) 262
Hin1II CATG 1 cut(s) 698
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HincII GTYRAC 2 cut(s) 655, 727
HindII GTYRAC 2 cut(s) 655, 727
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 5 cut(s) 24, 66, 269, 281, 409
HpaI GTTAAC 1 cut(s) 655
HpaII CCGG 1 cut(s) 15
HphI GGTGA 5 cut(s) 58, 215, 404, 483, 554
Hpy166II GTNNAC 3 cut(s) 20, 655, 727
Hpy188I TCNGA 4 cut(s) 158, 286, 308, 481
Hpy188III TCNNGA 4 cut(s) 58, 216, 469, 471
Hpy8I GTNNAC 3 cut(s) 20, 655, 727
HpyCH4III ACNGT 2 cut(s) 652, 659
HpyCH4V TGCA 8 cut(s) 77, 95, 194, 200, 314, 365, 497, 647
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 320, 431, 605
Hsp92II CATG 1 cut(s) 698
HspAI GCGC 1 cut(s) 260
KspAI GTTAAC 1 cut(s) 655
Kzo9I GATC 4 cut(s) 158, 303, 473, 744
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 1 cut(s) 589
Lsp1109I GCAGC 6 cut(s) 304, 307, 326, 421, 424, 509
LweI GCATC 2 cut(s) 64, 301
MaeI CTAG 2 cut(s) 624, 666
MaeIII GTNAC 3 cut(s) 374, 383, 738
MalI GATC 4 cut(s) 160, 305, 475, 746
MboI GATC 4 cut(s) 158, 303, 473, 744
MboII GAAGA 2 cut(s) 419, 567
MflI RGATCY 1 cut(s) 158
MluCI AATT 5 cut(s) 7, 53, 144, 487, 570
MlyI GAGTC 2 cut(s) 33, 403
MmeI TCCRAC 4 cut(s) 54, 192, 262, 486
MnlI CCTC 5 cut(s) 37, 243, 370, 451, 457
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 2 cut(s) 245, 654
MslI CAYNNNNRTG 1 cut(s) 699
MspA1I CMGCKG 2 cut(s) 317, 434
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 325, 390
MvaI CCWGG 2 cut(s) 325, 390
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 4 cut(s) 149, 320, 431, 605
NdeII GATC 4 cut(s) 158, 303, 473, 744
NlaIII CATG 1 cut(s) 698
NlaIV GGNNCC 2 cut(s) 585, 594
NmuCI GTSAC 1 cut(s) 374
NspI RCATGY 1 cut(s) 698
NspV TTCGAA 1 cut(s) 553
PaeR7I CTCGAG 1 cut(s) 469
PaqCI CACCTGC 2 cut(s) 191, 502
PciI ACATGT 1 cut(s) 694
PciSI GCTCTTC 1 cut(s) 432
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 3 cut(s) 66, 269, 281
PflFI GACNNNGTC 1 cut(s) 722
PflMI CCANNNNNTGG 1 cut(s) 296
PkrI GCNGC 7 cut(s) 259, 316, 319, 322, 436, 439, 499
PleI GAGTC 2 cut(s) 32, 403
PpsI GAGTC 2 cut(s) 32, 403
PscI ACATGT 1 cut(s) 694
Psp6I CCWGG 2 cut(s) 323, 388
PspGI CCWGG 2 cut(s) 323, 388
PspN4I GGNNCC 2 cut(s) 585, 594
PspPI GGNCC 1 cut(s) 593
PstI CTGCAG 2 cut(s) 97, 499
PstNI CAGNNNCTG 3 cut(s) 284, 320, 437
PsuI RGATCY 1 cut(s) 158
PsyI GACNNNGTC 1 cut(s) 722
PvuII CAGCTG 2 cut(s) 317, 434
RsaI GTAC 3 cut(s) 223, 664, 670
RsaNI GTAC 3 cut(s) 222, 663, 669
RseI CAYNNNNRTG 1 cut(s) 699
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 2 cut(s) 245, 654
SatI GCNGC 7 cut(s) 258, 315, 318, 321, 435, 438, 498
Sau3AI GATC 4 cut(s) 158, 303, 473, 744
Sau96I GGNCC 1 cut(s) 593
ScaI AGTACT 1 cut(s) 664
SchI GAGTC 2 cut(s) 33, 403
ScrFI CCNGG 2 cut(s) 325, 390
SfaNI GCATC 2 cut(s) 64, 301
SfcI CTRYAG 3 cut(s) 93, 495, 537
Sfr274I CTCGAG 1 cut(s) 469
SfuI TTCGAA 1 cut(s) 553
SinI GGWCC 1 cut(s) 593
SlaI CTCGAG 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
SpeI ACTAGT 1 cut(s) 665
Sse9I AATT 5 cut(s) 7, 53, 144, 487, 570
SsiI CCGC 3 cut(s) 258, 352, 675
SspMI CTAG 2 cut(s) 624, 666
StyD4I CCNGG 2 cut(s) 323, 388
TaaI ACNGT 2 cut(s) 652, 659
TaqI TCGA 2 cut(s) 470, 553
TasI AATT 5 cut(s) 7, 53, 144, 487, 570
TatI WGTACW 3 cut(s) 221, 662, 668
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 3 cut(s) 66, 269, 281
Tru1I TTAA 2 cut(s) 245, 654
Tru9I TTAA 2 cut(s) 245, 654
TscAI CASTG 1 cut(s) 720
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 6 cut(s) 314, 317, 320, 434, 437, 497
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 2 cut(s) 600, 654
TspRI CASTG 1 cut(s) 720
Tth111I GACNNNGTC 1 cut(s) 722
Van91I CCANNNNNTGG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 593
XagI CCTNNNNNAGG 1 cut(s) 498
XapI RAATTY 2 cut(s) 7, 53
XceI RCATGY 1 cut(s) 698
XhoI CTCGAG 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 2 cut(s) 624, 666
ZrmI AGTACT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.