Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008219

Physical Location & Seq

Genomic Coordinates Forward (+)

7937630 .. 7939604

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAGAGACTACAGAGAATCTTCGGAGCTGGTGGCGGTTTAGGTCACGCATCGCCTGATTCTCCGACTCTCGATACATCGGAGCAGGTTTACATCTCTTCTCTCGCTCTCCTCAAGATGCTTAAGCACGGAAGAGCTGGTGTTCCTATGGAAGTCATGGGATTGATGCTTGGAGAGTTTGTGGATGAATACACTGTTAGGGTTGTGGATGTTTTTGCGATGCCTCAGAGTGGTACTGGTGTTAGTGTTGAAGCTGTTGATCATGTTTTCCAGACTAATATGCTCGACATGCTTAAACAGACCGGAAGACCTGAGATGGTGGTTGGTTGGTATCATTCACATCCTGGATTCGGCTGCTGGCTTTCTGGGGTTGACATTAATACTCAACAGAGTTTTGAAGCTTTGAATCAGCGAGCTGTAGCAGTGGTGGTAGATCCGATTCAGAGTGTGAAAGGAAAGGTGGTGATTGATGCGTTCCGCTCCATAAATCCACAGACCATTATGCTTGGGCAGGAACCCCGTCAAACAACATCGAACCTTGGGCACTTGAACAAACCATCGATCCAGGCTTTGATTCACGGGTTGAACAGACACTATTACTCAATAGCAATCAACTATAGGAAGAACGAGCTTGAGGAGAAGATGTTACTCAACCTCCACAAGAAGAAATGGACAGATGGTCTGACGCTAAGACGCTTTGACACCCACTCCAAGACCAACGAACAGACGGTCCAGGAGATGTTGAGCTTGGCTGCTAAATATAACAAGGCGGTTCAAGAGGAGGACGAGTTGTCACCAGAGAAGCTGGCAATTGTGAATGTGGGAAGACAAGATGCAAAGAAGCATCTGGAAGAACATGTCTCGAACCTCATGTCATCCAACATTGTTCAGACACTAGGCACTATGCTCGACACTGTTGTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

308

Amino Acids

34.35

Weight (kDa)

6.31

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	26 - 137	1.1e-34	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB	PF14464	37 - 126	1.6e-06	Prokaryotic homologs of the JAB domain
RPN11_C	PF23594	227 - 306	4.6e-36	26S proteasome regulatory subunit RPN11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23540 AT5G23540
fragaria_vesca	FvH4_2g34740 FvH4_2g34740 FvH4_2g34740
malus_domestica	MD08G1104100.v1.1 MD15G1085300.v1.1
prunus_persica	Prupe.1G439400_v2.0.a1
pyrus_communis	pycom08g08550 pycom15g08050
rosa_chinensis	RchiOBHm_Chr6g0263451 RchiOBHm_Chr6g0307401
rosa_laevigata	RLG00000010717 RLG00000014338
rosa_multiflora	Rmu_sc0000031.1_g000014 Rmu_sc0005715.1_g000007
rosa_rugosa	Rorug06G0358400 Rorug06G0358500
rosa_samantha	Rh6BG430700 Rh6BG431500 Rh6CG484000 Rh6DG470800
rosa_wichuraiana	Rw6G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	917
Acc36I	ACCTGC	1 cut(s)	76
AccBSI	CCGCTC	1 cut(s)	480
AciI	CCGC	3 cut(s)	36, 478, 770
AclWI	GGATC	2 cut(s)	428, 556
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	230, 350
AflII	CTTAAG	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	856
AgsI	TTSAA	6 cut(s)	251, 398, 406, 550, 586, 776
AhdI	GACNNNNNGTC	2 cut(s)	678, 790
AjnI	CCWGG	3 cut(s)	343, 564, 732
AloI	GAACNNNNNNTCC	2 cut(s)	714, 746
AluBI	AGCT	8 cut(s)	29, 137, 254, 401, 416, 631, 747, 805
AluI	AGCT	8 cut(s)	29, 137, 254, 401, 416, 631, 747, 805
Alw26I	GTCTC	1 cut(s)	865
AlwI	GGATC	2 cut(s)	428, 556
ApeKI	GCWGC	2 cut(s)	354, 752
ArsI	GACNNNNNNTTYG	4 cut(s)	714, 746, 857, 889
AseI	ATTAAT	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	730
AsuHPI	GGTGA	2 cut(s)	475, 786
AvaII	GGWCC	1 cut(s)	730
BaeGI	GKGCMC	1 cut(s)	546
BaeI	ACNNNNGTAYC	2 cut(s)	225, 258
BbsI	GAAGAC	3 cut(s)	313, 832, 913
BbvI	GCAGC	2 cut(s)	341, 739
BccI	CCATC	3 cut(s)	310, 565, 671
BcgI	CGANNNNNNTGC	2 cut(s)	889, 923
BciT130I	CCWGG	3 cut(s)	345, 566, 734
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	865
BfaI	CTAG	2 cut(s)	896, 925
BfmI	CTRYAG	3 cut(s)	11, 417, 616
BfrI	CTTAAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	76
BisI	GCNGC	2 cut(s)	355, 753
BlsI	GCNGC	2 cut(s)	356, 754
Bme1390I	CCNGG	3 cut(s)	345, 566, 734
Bme18I	GGWCC	1 cut(s)	730
BmeRI	GACNNNNNGTC	2 cut(s)	678, 790
BmgT120I	GGNCC	1 cut(s)	730
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	3 cut(s)	345, 566, 734
BmsI	GCATC	7 cut(s)	59, 108, 156, 210, 460, 823, 853
BpiI	GAAGAC	3 cut(s)	313, 832, 913
BpuEI	CTTGAG	2 cut(s)	98, 653
Bsa29I	ATCGAT	1 cut(s)	560
BsaJI	CCNNGG	1 cut(s)	538
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 350
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	3 cut(s)	345, 566, 734
BseCI	ATCGAT	1 cut(s)	560
BseDI	CCNNGG	1 cut(s)	538
BseGI	GGATG	4 cut(s)	190, 214, 340, 875
BseLI	CCNNNNNNNGG	2 cut(s)	230, 350
BseMII	CTCAG	2 cut(s)	239, 303
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	3 cut(s)	101, 650, 794
BseSI	GKGCMC	1 cut(s)	546
BseXI	GCAGC	2 cut(s)	341, 739
BshVI	ATCGAT	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	230, 350
BsmAI	GTCTC	1 cut(s)	865
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	3 cut(s)	259, 433, 561
BspACI	CCGC	3 cut(s)	36, 478, 770
BspCNI	CTCAG	2 cut(s)	238, 304
BspDI	ATCGAT	1 cut(s)	560
BspLI	GGNNCC	1 cut(s)	516
BspMI	ACCTGC	1 cut(s)	76
BspPI	GGATC	2 cut(s)	428, 556
BspQI	GCTCTTC	1 cut(s)	127
BspTI	CTTAAG	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	3 cut(s)	259, 433, 561
BssT1I	CCWWGG	1 cut(s)	538
Bst2UI	CCWGG	3 cut(s)	345, 566, 734
Bst4CI	ACNGT	3 cut(s)	196, 730, 916
Bst6I	CTCTTC	2 cut(s)	103, 127
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	359, 414, 807
BstDEI	CTNAG	3 cut(s)	225, 312, 689
BstF5I	GGATG	4 cut(s)	190, 214, 340, 875
BstKTI	GATC	3 cut(s)	262, 436, 564
BstMAI	GTCTC	1 cut(s)	865
BstMBI	GATC	3 cut(s)	259, 433, 561
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstNI	CCWGG	3 cut(s)	345, 566, 734
BstNSI	RCATGY	2 cut(s)	292, 860
BstSCI	CCNGG	3 cut(s)	343, 564, 732
BstSFI	CTRYAG	3 cut(s)	11, 417, 616
BstSLI	GKGCMC	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	341, 739
BstV2I	GAAGAC	3 cut(s)	313, 832, 913
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	560
BsuTUI	ATCGAT	1 cut(s)	560
BtgZI	GCGATG	2 cut(s)	36, 233
BtsCI	GGATG	4 cut(s)	190, 214, 340, 875
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	3 cut(s)	192, 429, 912
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	3 cut(s)	359, 414, 807
Cfr13I	GGNCC	1 cut(s)	730
ClaI	ATCGAT	1 cut(s)	560
CseI	GACGC	2 cut(s)	694, 702
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	5 cut(s)	157, 263, 289, 857, 871
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	3 cut(s)	225, 312, 689
DpnI	GATC	3 cut(s)	261, 435, 563
DpnII	GATC	3 cut(s)	259, 433, 561
DrdI	GACNNNNNNGTC	1 cut(s)	917
DriI	GACNNNNNGTC	2 cut(s)	678, 790
DseDI	GACNNNNNNGTC	1 cut(s)	917
Eam1104I	CTCTTC	2 cut(s)	103, 127
Eam1105I	GACNNNNNGTC	2 cut(s)	678, 790
EarI	CTCTTC	2 cut(s)	103, 127
Eco130I	CCWWGG	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	730
EcoRII	CCWGG	3 cut(s)	343, 564, 732
EcoT14I	CCWWGG	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	538
FaeI	CATG	5 cut(s)	160, 266, 292, 860, 874
FatI	CATG	5 cut(s)	156, 262, 288, 856, 870
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	355, 753
FokI	GGATG	4 cut(s)	197, 221, 327, 862
Fsp4HI	GCNGC	2 cut(s)	355, 753
FspBI	CTAG	2 cut(s)	896, 925
GluI	GCNGC	2 cut(s)	355, 753
HapII	CCGG	1 cut(s)	303
HgaI	GACGC	2 cut(s)	694, 702
Hin1II	CATG	5 cut(s)	160, 266, 292, 860, 874
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	399
HinfI	GANTC	7 cut(s)	18, 59, 67, 348, 406, 439, 574
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	2 cut(s)	475, 786
Hpy166II	GTNNAC	2 cut(s)	91, 373
Hpy188I	TCNGA	8 cut(s)	26, 66, 82, 228, 438, 444, 684, 891
Hpy188III	TCNNGA	6 cut(s)	71, 115, 271, 776, 848, 862
Hpy8I	GTNNAC	2 cut(s)	91, 373
HpyCH4III	ACNGT	3 cut(s)	196, 730, 916
HpyCH4V	TGCA	1 cut(s)	836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	3 cut(s)	225, 312, 689
Hsp92II	CATG	5 cut(s)	160, 266, 292, 860, 874
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	259, 433, 561
LguI	GCTCTTC	1 cut(s)	127
LmnI	GCTCC	3 cut(s)	26, 82, 485
Lsp1109I	GCAGC	2 cut(s)	341, 739
LweI	GCATC	7 cut(s)	59, 108, 156, 210, 460, 823, 853
MaeI	CTAG	2 cut(s)	896, 925
MaeIII	GTNAC	3 cut(s)	44, 645, 792
MalI	GATC	3 cut(s)	261, 435, 563
MbiI	CCGCTC	1 cut(s)	480
MboI	GATC	3 cut(s)	259, 433, 561
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	1 cut(s)	810
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	89, 903
MnlI	CCTC	7 cut(s)	122, 234, 628, 665, 772, 775, 878
MseI	TTAA	3 cut(s)	123, 294, 378
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	3 cut(s)	345, 566, 734
MunI	CAATTG	1 cut(s)	810
MvaI	CCWGG	3 cut(s)	345, 566, 734
MwoI	GCNNNNNNNGC	1 cut(s)	289
NdeII	GATC	3 cut(s)	259, 433, 561
NlaIII	CATG	5 cut(s)	160, 266, 292, 860, 874
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	2 cut(s)	44, 792
NspI	RCATGY	2 cut(s)	292, 860
PciI	ACATGT	1 cut(s)	856
PciSI	GCTCTTC	1 cut(s)	127
PfeI	GAWTC	6 cut(s)	18, 59, 348, 406, 439, 574
PfoI	TCCNGGA	2 cut(s)	343, 732
PkrI	GCNGC	2 cut(s)	356, 754
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PscI	ACATGT	1 cut(s)	856
PshBI	ATTAAT	1 cut(s)	378
Psp6I	CCWGG	3 cut(s)	343, 564, 732
PspGI	CCWGG	3 cut(s)	343, 564, 732
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	127
SaqAI	TTAA	3 cut(s)	123, 294, 378
SatI	GCNGC	2 cut(s)	355, 753
Sau3AI	GATC	3 cut(s)	259, 433, 561
Sau96I	GGNCC	1 cut(s)	730
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	3 cut(s)	345, 566, 734
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	7 cut(s)	59, 108, 156, 210, 460, 823, 853
SfcI	CTRYAG	3 cut(s)	11, 417, 616
SinI	GGWCC	1 cut(s)	730
SmlI	CTYRAG	3 cut(s)	113, 122, 632
SmoI	CTYRAG	3 cut(s)	113, 122, 632
Sse9I	AATT	1 cut(s)	810
SsiI	CCGC	3 cut(s)	36, 478, 770
SspMI	CTAG	2 cut(s)	896, 925
StyD4I	CCNGG	3 cut(s)	343, 564, 732
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	3 cut(s)	196, 730, 916
TaqI	TCGA	6 cut(s)	72, 285, 533, 560, 863, 909
TasI	AATT	1 cut(s)	810
TfiI	GAWTC	6 cut(s)	18, 59, 348, 406, 439, 574
Tru1I	TTAA	3 cut(s)	123, 294, 378
Tru9I	TTAA	3 cut(s)	123, 294, 378
TscAI	CASTG	3 cut(s)	199, 429, 919
TseFI	GTSAC	2 cut(s)	44, 792
TseI	GCWGC	2 cut(s)	354, 752
Tsp45I	GTSAC	2 cut(s)	44, 792
TspDTI	ATGAA	1 cut(s)	201
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	3 cut(s)	199, 429, 919
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	730
VspI	ATTAAT	1 cut(s)	378
XceI	RCATGY	2 cut(s)	292, 860
XspI	CTAG	2 cut(s)	896, 925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.