Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008219

Physical Location & Seq

Genomic Coordinates Forward (+)

51701354 .. 51706286

Gene Structure 4933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014338

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTCAGGTATGGAGAGGCTACAGAGAATGTTCGCCGGTGCCGGAGGAGCTTTGGGCCACCCGCCGCCCGATTCCCCCACCCTCGATTCCTCCGAGCAGGTCTACATCTCCTCCTTGGCGCTCCTCAAAATGCTCAAGCACGGAAGAGCTGGGGTTCCTATGGAGGTCATGGGATTGATGCTGGGAGAGTTTGTGGATGAATACACTGTTCGTGTTGTTGACGTCTTTGCGATGCCGCAGAGTGGTACTGGTGTCAGTGTCGAAGCCGTCGATCATGTCTTCCAGACTAATATGCTTGATATGCTCAAGCAGACCGGACGGTATGTCTTCTTTCACTTTGAATTGTGGAAGATGAGCGGCTATGTTTCCTTTTGTGGTTTTGGTTTGAGTAGCTTTGAAGCTTTGAATCAACGGGCTGTAGCTGTAGTGGTGGATCCAATTCAGAGCGTGAAGGGGAAGGTAGTCATTGATGCATTCCGCCTTATCAACCCACAAACTATGATGCTTGGCCAAGAACCACGGCAGACCACATCCAATCTCGGGCATCTAAATAAGCCATCAATTCAAGCCTTGATCCATGGGTTAAATCGTCATTATTACTCCATAGCAATTAATTACCGGAAGAATGAACTCGAGGAGAAAATGTTGCTTAACCTTCACAAGAAGAAATGGACAGATGGGCTGACACTAAAGCGATTTGACACTCATTCAAAAACAAATGAGCAAACAGTTCAGGAGATGTTAAATCTAGCTGTTAAATACAACAAGGCAGTGCAGGAGGAGGATGAGCTGCCACCAGAGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCTAAGAAGCACCTTGAAGAGCATGTCTCCAACTTAATGTCCTCAAACATTGTCCAGACCTTGGGCACAATGCTTGATACTGTGGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

309

Amino Acids

34.51

Weight (kDa)

6.6

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	30 - 106	6.2e-17	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
RPN11_C	PF23594	227 - 306	1e-34	26S proteasome regulatory subunit RPN11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23540 AT5G23540
fragaria_vesca	FvH4_2g34740 FvH4_2g34740 FvH4_2g34740
malus_domestica	MD08G1104100.v1.1 MD15G1085300.v1.1
prunus_persica	Prupe.1G439400_v2.0.a1
pyrus_communis	pycom08g08550 pycom15g08050
rosa_chinensis	RchiOBHm_Chr6g0263451 RchiOBHm_Chr6g0307401
rosa_laevigata	RLG00000010717 RLG00000014338
rosa_multiflora	Rmu_sc0000031.1_g000014 Rmu_sc0005715.1_g000007
rosa_rugosa	Rorug06G0358400 Rorug06G0358500
rosa_samantha	Rh6BG430700 Rh6BG431500 Rh6CG484000 Rh6DG470800
rosa_wichuraiana	Rw6G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	895
AccBSI	CCGCTC	1 cut(s)	357
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	5 cut(s)	62, 65, 236, 357, 478
AclWI	GGATC	3 cut(s)	428, 441, 568
AcoI	YGGCCR	1 cut(s)	508
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	3 cut(s)	242, 540, 895
AgsI	TTSAA	6 cut(s)	341, 398, 406, 566, 711, 851
AhdI	GACNNNNNGTC	1 cut(s)	323
AluBI	AGCT	8 cut(s)	50, 149, 393, 401, 422, 752, 790, 805
AluI	AGCT	8 cut(s)	50, 149, 393, 401, 422, 752, 790, 805
Alw26I	GTCTC	1 cut(s)	865
AlwI	GGATC	3 cut(s)	428, 441, 568
Ama87I	CYCGRG	2 cut(s)	539, 632
AoxI	GGCC	2 cut(s)	55, 508
ApeKI	GCWGC	1 cut(s)	790
AseI	ATTAAT	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	55
AvaI	CYCGRG	2 cut(s)	539, 632
BaeGI	GKGCMC	1 cut(s)	902
BaeI	ACNNNNGTAYC	3 cut(s)	237, 270, 903
BalI	TGGCCA	1 cut(s)	510
BamHI	GGATCC	1 cut(s)	433
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	3 cut(s)	271, 319, 832
BbvI	GCAGC	1 cut(s)	777
BccI	CCATC	2 cut(s)	565, 671
BceAI	ACGGC	2 cut(s)	251, 536
BcoDI	GTCTC	1 cut(s)	865
BfaI	CTAG	2 cut(s)	749, 925
BfmI	CTRYAG	3 cut(s)	20, 417, 423
BfoI	RGCGCY	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	4 cut(s)	65, 236, 358, 791
BlsI	GCNGC	4 cut(s)	66, 237, 359, 792
BmeRI	GACNNNNNGTC	1 cut(s)	323
BmeT110I	CYCGRG	2 cut(s)	539, 632
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	3 cut(s)	40, 156, 435
BmsI	GCATC	6 cut(s)	168, 222, 460, 492, 553, 823
BpiI	GAAGAC	3 cut(s)	271, 319, 832
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
BpuEI	CTTGAG	2 cut(s)	119, 290
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	4 cut(s)	114, 518, 577, 894
BsaWI	WCCGGW	2 cut(s)	314, 618
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 177, 207, 629, 659
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 540, 895
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	253
BseDI	CCNNGG	4 cut(s)	114, 518, 577, 894
BseGI	GGATG	3 cut(s)	202, 530, 790
BseLI	CCNNNNNNNGG	3 cut(s)	242, 540, 895
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	5 cut(s)	60, 100, 113, 650, 794
BseSI	GKGCMC	1 cut(s)	902
BseXI	GCAGC	1 cut(s)	777
BseYI	CCCAGC	2 cut(s)	149, 181
BsgI	GTGCAG	1 cut(s)	794
BshFI	GGCC	2 cut(s)	57, 510
BshNI	GGYRCC	1 cut(s)	38
BsiHKCI	CYCGRG	2 cut(s)	539, 632
BsiSI	CCGG	4 cut(s)	36, 42, 315, 619
BslI	CCNNNNNNNGG	3 cut(s)	242, 540, 895
BsmAI	GTCTC	1 cut(s)	865
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	57, 510
BsoBI	CYCGRG	2 cut(s)	539, 632
Bsp1286I	GDGCHC	1 cut(s)	902
Bsp143I	GATC	3 cut(s)	271, 433, 573
Bsp19I	CCATGG	1 cut(s)	577
BspACI	CCGC	5 cut(s)	62, 65, 236, 357, 478
BspANI	GGCC	2 cut(s)	57, 510
BspLI	GGNNCC	3 cut(s)	40, 156, 435
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	428, 441, 568
BspQI	GCTCTTC	2 cut(s)	139, 846
BspT107I	GGYRCC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	357
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	4 cut(s)	114, 518, 577, 894
BssMI	GATC	3 cut(s)	271, 433, 573
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	3 cut(s)	114, 577, 894
Bst4CI	ACNGT	4 cut(s)	208, 321, 730, 916
Bst6I	CTCTTC	2 cut(s)	139, 846
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	807
BstDEI	CTNAG	1 cut(s)	837
BstDSI	CCRYGG	2 cut(s)	518, 577
BstF5I	GGATG	3 cut(s)	202, 530, 790
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	3 cut(s)	274, 436, 576
BstMAI	GTCTC	1 cut(s)	865
BstMBI	GATC	3 cut(s)	271, 433, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 301
BstNSI	RCATGY	1 cut(s)	860
BstSFI	CTRYAG	3 cut(s)	20, 417, 423
BstSLI	GKGCMC	1 cut(s)	902
BstV1I	GCAGC	1 cut(s)	777
BstV2I	GAAGAC	3 cut(s)	271, 319, 832
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	57, 510
BtgI	CCRYGG	2 cut(s)	518, 577
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	3 cut(s)	202, 530, 790
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	3 cut(s)	204, 262, 777
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	807
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	246
CviAII	CATG	4 cut(s)	169, 275, 578, 857
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	837
DpnI	GATC	3 cut(s)	273, 435, 575
DpnII	GATC	3 cut(s)	271, 433, 573
DriI	GACNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	2 cut(s)	139, 846
Eam1105I	GACNNNNNGTC	1 cut(s)	323
EarI	CTCTTC	2 cut(s)	139, 846
EciI	GGCGGA	1 cut(s)	467
Eco130I	CCWWGG	3 cut(s)	114, 577, 894
Eco88I	CYCGRG	2 cut(s)	539, 632
EcoT14I	CCWWGG	3 cut(s)	114, 577, 894
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	3 cut(s)	114, 577, 894
FaeI	CATG	4 cut(s)	172, 278, 581, 860
FatI	CATG	4 cut(s)	168, 274, 577, 856
FauI	CCCGC	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	65, 236, 358, 791
FokI	GGATG	3 cut(s)	209, 517, 797
Fsp4HI	GCNGC	4 cut(s)	65, 236, 358, 791
FspBI	CTAG	2 cut(s)	749, 925
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	65, 236, 358, 791
GsaI	CCCAGC	2 cut(s)	153, 185
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	57, 510
HapII	CCGG	4 cut(s)	36, 42, 315, 619
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	172, 278, 581, 860
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	2 cut(s)	399, 803
HinfI	GANTC	3 cut(s)	71, 86, 406
HpaII	CCGG	4 cut(s)	36, 42, 315, 619
Hpy166II	GTNNAC	2 cut(s)	103, 220
Hpy188I	TCNGA	2 cut(s)	94, 444
Hpy188III	TCNNGA	3 cut(s)	283, 734, 889
Hpy8I	GTNNAC	2 cut(s)	103, 220
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	445, 451, 665
HpyCH4III	ACNGT	4 cut(s)	208, 321, 730, 916
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	473, 775, 809, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 301
HpyF3I	CTNAG	1 cut(s)	837
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	172, 278, 581, 860
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	3 cut(s)	271, 433, 573
LguI	GCTCTTC	2 cut(s)	139, 846
LmnI	GCTCC	2 cut(s)	47, 126
Lsp1109I	GCAGC	1 cut(s)	777
LweI	GCATC	6 cut(s)	168, 222, 460, 492, 553, 823
MaeI	CTAG	2 cut(s)	749, 925
MaeII	ACGT	1 cut(s)	222
MalI	GATC	3 cut(s)	273, 435, 575
MbiI	CCGCTC	1 cut(s)	357
MboI	GATC	3 cut(s)	271, 433, 573
MboII	GAAGA	8 cut(s)	156, 271, 319, 361, 634, 676, 837, 863
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	902
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	6 cut(s)	341, 438, 561, 609, 613, 810
MluNI	TGGCCA	1 cut(s)	510
MmeI	TCCRAC	1 cut(s)	888
Mox20I	TGGCCA	1 cut(s)	510
Mph1103I	ATGCAT	1 cut(s)	475
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	6 cut(s)	584, 612, 651, 743, 756, 869
Msp20I	TGGCCA	1 cut(s)	510
MspI	CCGG	4 cut(s)	36, 42, 315, 619
MunI	CAATTG	1 cut(s)	810
Mva1269I	GAATGC	1 cut(s)	473
MwoI	GCNNNNNNNGC	2 cut(s)	47, 301
NcoI	CCATGG	1 cut(s)	577
NdeII	GATC	3 cut(s)	271, 433, 573
NlaIII	CATG	4 cut(s)	172, 278, 581, 860
NlaIV	GGNNCC	3 cut(s)	40, 156, 435
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	1 cut(s)	860
PaeR7I	CTCGAG	1 cut(s)	632
PciSI	GCTCTTC	2 cut(s)	139, 846
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 267
PctI	GAATGC	1 cut(s)	473
PfeI	GAWTC	3 cut(s)	71, 86, 406
PflMI	CCANNNNNTGG	1 cut(s)	895
PkrI	GCNGC	4 cut(s)	66, 237, 359, 792
PshBI	ATTAAT	1 cut(s)	612
PspFI	CCCAGC	2 cut(s)	149, 181
PspN4I	GGNNCC	3 cut(s)	40, 156, 435
PspPI	GGNCC	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SapI	GCTCTTC	2 cut(s)	139, 846
SaqAI	TTAA	6 cut(s)	584, 612, 651, 743, 756, 869
SatI	GCNGC	4 cut(s)	65, 236, 358, 791
Sau3AI	GATC	3 cut(s)	271, 433, 573
Sau96I	GGNCC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	902
SfaNI	GCATC	6 cut(s)	168, 222, 460, 492, 553, 823
SfcI	CTRYAG	3 cut(s)	20, 417, 423
Sfr274I	CTCGAG	1 cut(s)	632
SgrAI	CRCCGGYG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	632
SmlI	CTYRAG	3 cut(s)	134, 305, 632
SmoI	CTYRAG	3 cut(s)	134, 305, 632
Sse9I	AATT	6 cut(s)	341, 438, 561, 609, 613, 810
SsiI	CCGC	5 cut(s)	62, 65, 236, 357, 478
SspMI	CTAG	2 cut(s)	749, 925
StyI	CCWWGG	3 cut(s)	114, 577, 894
TaaI	ACNGT	4 cut(s)	208, 321, 730, 916
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	4 cut(s)	84, 261, 270, 633
TasI	AATT	6 cut(s)	341, 438, 561, 609, 613, 810
TauI	GCSGC	3 cut(s)	67, 238, 360
TfiI	GAWTC	3 cut(s)	71, 86, 406
Tru1I	TTAA	6 cut(s)	584, 612, 651, 743, 756, 869
Tru9I	TTAA	6 cut(s)	584, 612, 651, 743, 756, 869
TscAI	CASTG	3 cut(s)	211, 262, 777
TseI	GCWGC	1 cut(s)	790
TspDTI	ATGAA	2 cut(s)	213, 642
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	3 cut(s)	211, 262, 777
Van91I	CCANNNNNTGG	1 cut(s)	895
VspI	ATTAAT	1 cut(s)	612
XceI	RCATGY	1 cut(s)	860
XhoI	CTCGAG	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	2 cut(s)	749, 925
ZraI	GACGTC	1 cut(s)	223
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.