Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000265

Physical Location & Seq

Genomic Coordinates Forward (+)

50725494 .. 50727410

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0358400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGTTTCGCTCAAGCTCCAGAAGCGGCTCGCCGCCAGCGTCCTCAAGTGTGGTCAGGGAAAGGTCTGGCTTGACCCCAATGAAGTCAGCGACATCTCCATGGCCAACTCTCGCCAAAACATAAGGAAGTTGGTCAAGGATGGGTTCATCATCAGGAAGCCCACCAAGATTCACTCGCGCTCCCGTGCACGTCGTATGAAGGAGGCCAAGAGAAAGGGCCGTCACTCTGGATATGGTAAGCGTAAGGGTACCAGGGAGGCAAGGCTTCCAACCAAAATCCTCTGGATGCGCAGGATGCGTGTCCTCAGGCGGTTGCTTCGCAAGTACCGGGAGGCAAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAACAAGAGAGTGCTCATGGAGAGCATCCACAAGTCTAAGGCCGAGAAGGCAAGAGAGAAGACTTTATCTGACCAGTTTGAAGCTAAGCGTGCCAAGAACAAGGCTAGCAGGGAGAGGAAAAATGCTAGGAGGGAAGAACGTTTGGCTCAGGGACCTGGAGAGAGAGCGCCAGTTGACGCATCAACACAGGCATCTAAGAAATCCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

203

Amino Acids

23.82

Weight (kDa)

11.37

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L19e	PF01280	4 - 54	7.7e-28	Ribosomal protein L19e, N-terminal domain
Ribosomal_L19e_C	PF25476	56 - 146	3.7e-35	Ribosomal protein L19e, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26560
fragaria_vesca	FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica	MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica	Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis	pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis	RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata	RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora	Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii	Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa	Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha	Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana	Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	290
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AccII	CGCG	1 cut(s)	178
AciI	CCGC	3 cut(s)	25, 33, 310
AclI	AACGTT	1 cut(s)	538
AcoI	YGGCCR	1 cut(s)	102
AfaI	GTAC	4 cut(s)	250, 326, 359, 371
AflIII	ACRYGT	2 cut(s)	354, 366
AgsI	TTSAA	2 cut(s)	397, 479
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	251, 553
AluBI	AGCT	2 cut(s)	16, 482
AluI	AGCT	2 cut(s)	16, 482
Alw21I	GWGCWC	2 cut(s)	190, 414
Alw44I	GTGCAC	1 cut(s)	186
AoxI	GGCC	4 cut(s)	102, 204, 217, 438
ApaLI	GTGCAC	1 cut(s)	186
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	3 cut(s)	180, 291, 568
AspS9I	GGNCC	2 cut(s)	217, 551
AsuC2I	CCSGG	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	551
AxyI	CCTNAGG	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	2 cut(s)	190, 414
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	2 cut(s)	253, 555
BcnI	CCSGG	1 cut(s)	329
BfaI	CTAG	2 cut(s)	504, 525
BfoI	RGCGCY	1 cut(s)	569
BglI	GCCNNNNNGGC	1 cut(s)	446
BisI	GCNGC	2 cut(s)	26, 33
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	2 cut(s)	27, 34
Bme1390I	CCNGG	3 cut(s)	253, 329, 555
Bme18I	GGWCC	1 cut(s)	551
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	217, 551
BmiI	GGNNCC	2 cut(s)	250, 552
BmrFI	CCNGG	3 cut(s)	253, 329, 555
BmsI	GCATC	5 cut(s)	276, 285, 432, 587, 599
BmtI	GCTAGC	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	546
Bpu1102I	GCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	99, 252
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bse1I	ACTGG	2 cut(s)	472, 569
Bse21I	CCTNAGG	1 cut(s)	305
BseBI	CCWGG	2 cut(s)	253, 555
BseDI	CCNNGG	2 cut(s)	99, 252
BseGI	GGATG	4 cut(s)	145, 291, 300, 423
BseMII	CTCAG	2 cut(s)	319, 560
BseNI	ACTGG	2 cut(s)	472, 569
BseSI	GKGCMC	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	4 cut(s)	104, 206, 219, 440
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	2 cut(s)	190, 414
BsiSI	CCGG	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	564
BsmFI	GGGAC	1 cut(s)	564
BsnI	GGCC	4 cut(s)	104, 206, 219, 440
Bsp1286I	GDGCHC	2 cut(s)	190, 414
Bsp1407I	TGTACA	1 cut(s)	369
Bsp1720I	GCTNAGC	1 cut(s)	483
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	3 cut(s)	25, 33, 310
BspANI	GGCC	4 cut(s)	104, 206, 219, 440
BspCNI	CTCAG	2 cut(s)	318, 559
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	250, 552
BspOI	GCTAGC	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	472, 569
BssECI	CCNNGG	2 cut(s)	99, 252
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	253, 555
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	4 cut(s)	30, 37, 489, 505
BstDEI	CTNAG	5 cut(s)	305, 435, 483, 546, 594
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	4 cut(s)	145, 291, 300, 423
BstFNI	CGCG	1 cut(s)	178
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	3 cut(s)	180, 291, 568
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 295, 446, 488
BstNI	CCWGG	2 cut(s)	253, 555
BstNSI	RCATGY	2 cut(s)	358, 370
BstSCI	CCNGG	3 cut(s)	251, 327, 553
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	464
Bsu36I	CCTNAGG	1 cut(s)	305
BsuRI	GGCC	4 cut(s)	104, 206, 219, 440
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	4 cut(s)	145, 291, 300, 423
Cac8I	GCNNGC	4 cut(s)	30, 37, 489, 505
CfoI	GCGC	3 cut(s)	180, 291, 568
Cfr13I	GGNCC	2 cut(s)	217, 551
CseI	GACGC	2 cut(s)	28, 584
Csp6I	GTAC	4 cut(s)	249, 325, 358, 370
CviAII	CATG	6 cut(s)	100, 355, 362, 367, 373, 415
CviQI	GTAC	4 cut(s)	249, 325, 358, 370
DdeI	CTNAG	5 cut(s)	305, 435, 483, 546, 594
EaeI	YGGCCR	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	551
Eco81I	CCTNAGG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	551
EcoRII	CCWGG	2 cut(s)	251, 553
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	6 cut(s)	103, 358, 365, 370, 376, 418
FaiI	YATR	9 cut(s)	101, 122, 197, 234, 356, 363, 368, 374, 416
FaqI	GGGAC	1 cut(s)	564
FatI	CATG	6 cut(s)	99, 354, 361, 366, 372, 414
Fnu4HI	GCNGC	2 cut(s)	26, 33
FokI	GGATG	4 cut(s)	152, 298, 307, 410
Fsp4HI	GCNGC	2 cut(s)	26, 33
FspBI	CTAG	2 cut(s)	504, 525
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	3 cut(s)	179, 290, 567
GluI	GCNGC	2 cut(s)	26, 33
GsuI	CTGGAG	1 cut(s)	576
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	4 cut(s)	104, 206, 219, 440
HapII	CCGG	1 cut(s)	328
HgaI	GACGC	2 cut(s)	28, 584
HhaI	GCGC	3 cut(s)	180, 291, 568
Hin1II	CATG	6 cut(s)	103, 358, 365, 370, 376, 418
Hin6I	GCGC	3 cut(s)	178, 289, 566
HinP1I	GCGC	3 cut(s)	178, 289, 566
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	188, 574
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	5 cut(s)	19, 154, 228, 283, 397
Hpy8I	GTNNAC	2 cut(s)	188, 574
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	193, 370, 439
HpyCH4IV	ACGT	2 cut(s)	190, 538
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 295, 446, 488
HpyF3I	CTNAG	5 cut(s)	305, 435, 483, 546, 594
HpySE526I	ACGT	2 cut(s)	190, 538
Hsp92II	CATG	6 cut(s)	103, 358, 365, 370, 376, 418
HspAI	GCGC	3 cut(s)	178, 289, 566
KpnI	GGTACC	1 cut(s)	252
LmnI	GCTCC	2 cut(s)	21, 185
LweI	GCATC	5 cut(s)	276, 285, 432, 587, 599
MaeI	CTAG	2 cut(s)	504, 525
MaeII	ACGT	2 cut(s)	190, 538
MaeIII	GTNAC	1 cut(s)	221
MboII	GAAGA	3 cut(s)	352, 469, 545
MhlI	GDGCHC	2 cut(s)	190, 414
MlsI	TGGCCA	1 cut(s)	104
MluNI	TGGCCA	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	8 cut(s)	53, 196, 250, 290, 314, 325, 507, 522
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	2 cut(s)	98, 371
Msp20I	TGGCCA	1 cut(s)	104
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	3 cut(s)	253, 329, 555
MvaI	CCWGG	2 cut(s)	253, 555
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	4 cut(s)	22, 295, 446, 488
NciI	CCSGG	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	99
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	6 cut(s)	103, 358, 365, 370, 376, 418
NlaIV	GGNNCC	2 cut(s)	250, 552
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	221
NsbI	TGCGCA	1 cut(s)	290
NspI	RCATGY	2 cut(s)	358, 370
PciI	ACATGT	2 cut(s)	354, 366
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	27, 34
PpuMI	RGGWCCY	1 cut(s)	551
PscI	ACATGT	2 cut(s)	354, 366
Psp1406I	AACGTT	1 cut(s)	538
Psp5II	RGGWCCY	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	251, 553
PspGI	CCWGG	2 cut(s)	251, 553
PspN4I	GGNNCC	2 cut(s)	250, 552
PspPI	GGNCC	2 cut(s)	217, 551
PspPPI	RGGWCCY	1 cut(s)	551
RsaI	GTAC	4 cut(s)	250, 326, 359, 371
RsaNI	GTAC	4 cut(s)	249, 325, 358, 370
RseI	CAYNNNNRTG	2 cut(s)	98, 371
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	2 cut(s)	26, 33
Sau96I	GGNCC	2 cut(s)	217, 551
ScrFI	CCNGG	3 cut(s)	253, 329, 555
SduI	GDGCHC	2 cut(s)	190, 414
SetI	ASST	7 cut(s)	18, 66, 193, 381, 484, 541, 556
SfaNI	GCATC	5 cut(s)	276, 285, 432, 587, 599
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	2 cut(s)	98, 371
SmlI	CTYRAG	2 cut(s)	11, 44
SmoI	CTYRAG	2 cut(s)	11, 44
SsiI	CCGC	3 cut(s)	25, 33, 310
SspMI	CTAG	2 cut(s)	504, 525
StyD4I	CCNGG	3 cut(s)	251, 327, 553
StyI	CCWWGG	1 cut(s)	99
TaiI	ACGT	2 cut(s)	193, 541
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	2 cut(s)	28, 35
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	96, 136, 212, 389
VneI	GTGCAC	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	551
XceI	RCATGY	2 cut(s)	358, 370
XspI	CTAG	2 cut(s)	504, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.