RchiOBHm_Chr3g0482871

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000265
Physical Location & Seq
Reverse (-)
28957892 .. 28959613
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44769

Sequence Viewer

Length: 810 bp
ATGTGCATGTGCTTAAATTTATGGGGAGGACAGGTGAAAAATAAGCCTTCCTTTGATGCCCTACTCTTGGACATATGTATTGCAACCTCAGCGGCACCAACTTATCTTCCAGCTCATTATTTTGAAACCAACGGCCTAAAAGGAAAAGTTAGAGAATTTCACCTGATAGATGGTGGATTGGCAGCAAATAATCCGACTTTGATTGCTATTGGTGAAGTGACAAAGGAAATAATTAAGGGGAGTTCAGACTTCTTTCCTATAAAACCAATGGACTATGGACGATTTCTGGTGATATCCTTAGGAACTGACTCATCGAAAGCTGAACTGAAATACAATGCTCATGTTGCCTCCAAGTGGGGTGTGTGGAATTGGTTAACGAGCGGTGGTTCCACCCCATTGATCAATGCTTTCAGTCAAGCAAGTGCCGCTATGGTCGATTTGCATCTTTCTGTGGTGTTCAAAGCCCTTCACTCGGAGAAAAACTATCTTCGAATTCAGGATCACACACTAAGTGGCGAAGTATCTTCAGTAGATGTAGCAACAGAGAAGAATCTGGACCATCTTCTCAAAGTTGGTGAAGGACTATTGAGACAACCAGTTTCAAGGGTTAATTTAGAGACAGGCAGATTCGAAGCTTGTAATCATGAGACTAATAAAGAGGCTCTTATAAGGTTTGCAAAATTGCTGTCCGAAGAGAAGTGGCTTCGCCTTGCAAGGTCTCCGATCCCCATGGACATATTGCAAAGTCTCACTGATATGTATGTTGCAAAGTTCCATGAGAAAGTCTTGGCATATGGTTCTCTATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

269

Amino Acids

29.8

Weight (kDa)

7.12

Isoelectric Point (pI)

31.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 15 - 70 3.2e-07 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 668
AccB1I GGYRCC 1 cut(s) 94
AccBSI CCGCTC 1 cut(s) 381
AciI CCGC 3 cut(s) 92, 381, 426
AclWI GGATC 2 cut(s) 507, 718
AcsI RAATTY 3 cut(s) 16, 155, 492
AcuI CTGAAG 1 cut(s) 510
AdeI CACNNNGTG 1 cut(s) 512
AfiI CCNNNNNNNGG 3 cut(s) 67, 354, 472
AgsI TTSAA 3 cut(s) 125, 460, 603
AluBI AGCT 3 cut(s) 113, 320, 635
AluI AGCT 3 cut(s) 113, 320, 635
Alw26I GTCTC 5 cut(s) 583, 611, 641, 723, 752
AlwI GGATC 2 cut(s) 507, 718
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 3 cut(s) 16, 155, 492
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 5 cut(s) 46, 152, 224, 301, 587
AsuII TTCGAA 2 cut(s) 490, 630
AvaII GGWCC 1 cut(s) 556
AxyI CCTNAGG 1 cut(s) 298
BanI GGYRCC 1 cut(s) 94
BbvCI CCTCAGC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 194
BccI CCATC 2 cut(s) 164, 567
BceAI ACGGC 1 cut(s) 148
BclI TGATCA 1 cut(s) 399
BcoDI GTCTC 5 cut(s) 583, 611, 641, 723, 752
BisI GCNGC 3 cut(s) 93, 183, 426
BlsI GCNGC 3 cut(s) 94, 184, 427
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 2 cut(s) 96, 388
BmsI GCATC 2 cut(s) 46, 451
Bpu10I CCTNAGC 1 cut(s) 88
Bpu14I TTCGAA 2 cut(s) 490, 630
BsaBI GATNNNNATC 1 cut(s) 441
BsaI GGTCTC 1 cut(s) 723
BsaJI CCNNGG 1 cut(s) 729
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 354, 472
Bse1I ACTGG 1 cut(s) 596
Bse21I CCTNAGG 1 cut(s) 298
Bse8I GATNNNNATC 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 729
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 3 cut(s) 67, 354, 472
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 596
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 1 cut(s) 135
BshNI GGYRCC 1 cut(s) 94
BslI CCNNNNNNNGG 3 cut(s) 67, 354, 472
BsmAI GTCTC 5 cut(s) 583, 611, 641, 723, 752
BsnI GGCC 1 cut(s) 135
Bso31I GGTCTC 1 cut(s) 723
Bsp119I TTCGAA 2 cut(s) 490, 630
Bsp143I GATC 3 cut(s) 399, 499, 723
Bsp19I CCATGG 1 cut(s) 729
BspACI CCGC 3 cut(s) 92, 381, 426
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 101
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 2 cut(s) 96, 388
BspPI GGATC 2 cut(s) 507, 718
BspT104I TTCGAA 2 cut(s) 490, 630
BspT107I GGYRCC 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 723
BsrBI CCGCTC 1 cut(s) 381
BsrI ACTGG 1 cut(s) 596
BssECI CCNNGG 1 cut(s) 729
BssMI GATC 3 cut(s) 399, 499, 723
BssT1I CCWWGG 1 cut(s) 729
Bst6I CTCTTC 1 cut(s) 687
BstBI TTCGAA 2 cut(s) 490, 630
BstDEI CTNAG 3 cut(s) 88, 298, 509
BstDSI CCRYGG 1 cut(s) 729
BstKTI GATC 3 cut(s) 402, 502, 726
BstMAI GTCTC 5 cut(s) 583, 611, 641, 723, 752
BstMBI GATC 3 cut(s) 399, 499, 723
BstMWI GCNNNNNNNGC 3 cut(s) 89, 344, 425
BstNSI RCATGY 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 194
Bsu36I CCTNAGG 1 cut(s) 298
BsuRI GGCC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 729
BtsIMutI CAGTG 1 cut(s) 750
CciI TCATGA 1 cut(s) 643
Cfr13I GGNCC 1 cut(s) 556
CviAII CATG 5 cut(s) 7, 341, 644, 730, 776
CviJI RGCY 8 cut(s) 46, 113, 135, 320, 464, 635, 662, 703
CviKI_1 RGCY 8 cut(s) 46, 113, 135, 320, 464, 635, 662, 703
DdeI CTNAG 3 cut(s) 88, 298, 509
DpnI GATC 3 cut(s) 401, 501, 725
DpnII GATC 3 cut(s) 399, 499, 723
DraIII CACNNNGTG 1 cut(s) 512
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 729
Eco31I GGTCTC 1 cut(s) 723
Eco32I GATATC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 556
Eco57I CTGAAG 1 cut(s) 510
Eco81I CCTNAGG 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 492
EcoRV GATATC 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 5 cut(s) 10, 344, 647, 733, 779
FalI AAGNNNNNCTT 4 cut(s) 35, 67, 648, 680
FatI CATG 5 cut(s) 6, 340, 643, 729, 775
FauNDI CATATG 2 cut(s) 74, 793
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 3 cut(s) 93, 183, 426
Fsp4HI GCNGC 3 cut(s) 93, 183, 426
GluI GCNGC 3 cut(s) 93, 183, 426
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 5 cut(s) 10, 344, 647, 733, 779
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 633
HinfI GANTC 3 cut(s) 308, 550, 627
HpaI GTTAAC 1 cut(s) 375
HphI GGTGA 5 cut(s) 46, 152, 224, 301, 587
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 5 cut(s) 195, 247, 475, 691, 723
Hpy188III TCNNGA 3 cut(s) 497, 554, 644
Hpy8I GTNNAC 1 cut(s) 375
HpyAV CCTTC 3 cut(s) 57, 476, 572
HpyCH4V TGCA 7 cut(s) 6, 83, 442, 677, 713, 742, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 344, 425
HpyF3I CTNAG 3 cut(s) 88, 298, 509
Hsp92II CATG 5 cut(s) 10, 344, 647, 733, 779
Ksp22I TGATCA 1 cut(s) 399
KspAI GTTAAC 1 cut(s) 375
Kzo9I GATC 3 cut(s) 399, 499, 723
LpnPI CCDG 8 cut(s) 17, 123, 176, 272, 482, 539, 606, 609
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 2 cut(s) 46, 451
MaeIII GTNAC 1 cut(s) 217
MalI GATC 3 cut(s) 401, 501, 725
MbiI CCGCTC 1 cut(s) 381
MboI GATC 3 cut(s) 399, 499, 723
MboII GAAGA 6 cut(s) 98, 479, 516, 554, 559, 704
MluCI AATT 7 cut(s) 16, 155, 231, 367, 492, 610, 680
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 4 cut(s) 20, 97, 358, 652
MseI TTAA 4 cut(s) 14, 234, 374, 609
MslI CAYNNNNRTG 1 cut(s) 755
MspA1I CMGCKG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 89, 344, 425
NcoI CCATGG 1 cut(s) 729
NdeI CATATG 2 cut(s) 74, 793
NdeII GATC 3 cut(s) 399, 499, 723
NlaIII CATG 5 cut(s) 10, 344, 647, 733, 779
NlaIV GGNNCC 2 cut(s) 96, 388
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 10
NspV TTCGAA 2 cut(s) 490, 630
PagI TCATGA 1 cut(s) 643
PfeI GAWTC 2 cut(s) 550, 627
PkrI GCNGC 3 cut(s) 94, 184, 427
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PsiI TTATAA 1 cut(s) 668
PspN4I GGNNCC 2 cut(s) 96, 388
PspPI GGNCC 1 cut(s) 556
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 4 cut(s) 14, 234, 374, 609
SatI GCNGC 3 cut(s) 93, 183, 426
Sau3AI GATC 3 cut(s) 399, 499, 723
Sau96I GGNCC 1 cut(s) 556
SchI GAGTC 1 cut(s) 302
SetI ASST 8 cut(s) 36, 89, 115, 165, 322, 637, 674, 719
SfaNI GCATC 2 cut(s) 46, 451
SfuI TTCGAA 2 cut(s) 490, 630
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 1 cut(s) 755
Sse9I AATT 7 cut(s) 16, 155, 231, 367, 492, 610, 680
SsiI CCGC 3 cut(s) 92, 381, 426
StyI CCWWGG 1 cut(s) 729
TaqI TCGA 4 cut(s) 314, 435, 490, 630
TasI AATT 7 cut(s) 16, 155, 231, 367, 492, 610, 680
TauI GCSGC 2 cut(s) 95, 428
TfiI GAWTC 2 cut(s) 550, 627
Tru1I TTAA 4 cut(s) 14, 234, 374, 609
Tru9I TTAA 4 cut(s) 14, 234, 374, 609
TscAI CASTG 1 cut(s) 757
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 217
TspRI CASTG 1 cut(s) 757
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 3 cut(s) 16, 155, 492
XceI RCATGY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.