pycom15g08110

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000265
Physical Location & Seq
Reverse (-)
5012587 .. 5014937
2351 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g08110.2

Sequence Viewer

Length: 1008 bp
ATGCTTGCTACCCCAGATGACAACAACCGCCCTGTGTTTGGTGCCAAGGATATTAAGGATTTCTACCTCACTCACTGCCCCAAAATCTTCCCCCAGAAACATTGTCCGTTGTTTCCGAAAATGACAAAGATTATCAAAGCCCTATCAGGGCCAAAATATGATGGGAAGTATCTGCATGACTTGGTTGGGCAGAAACTTGGTTCTAAAAAACTGCATCAGACATTGACTAATGTTGTCATTCCCACATTTGACATAAAACAGCTCCAGCCAACTATATTTTCCAGCTATGAGGTGAAAAGTAAACCATCATTTGATGCTTTACTCTCAGACATATGCATTGCAACCTCAGCTGCACCTACTTATCTACCAGCTCACTATTTTGAAACAATTGACCCAGAAGGGAATGTAAAAGACTTTAACCTTATAGATGGCGGTGTGGCTGCGAATAATCCGACTTTACTTGCAATTGGTGAAGTGACAAAGACAATAATAAGCGGGAGTGAAGATTTCTTCCCCATAAAGCCCATGGACTACGGGCGATTTCTAGTGATATCTCTAGGAACTGGCTCGGCAAAAGCTGAGTTCAAATACCGTGCGCATTCTGCAGCCAAGTGGGGTTTATTAGATTGGTTAACCAGCGGTGGTGGAACCCCAATAATTGATGTTTTCAGTCAATCAAGTTCTGATATGGTCGATTATCATCTTTCTGTGGTTTTCCAAGCCCTTCATTCGGAGAATAATTACCTTCGAATTCAGGATGACACATTAACTGGACAAGTATCTTCTGTGGACATAGCCGATAAGAAGAATTTGGATGATCTTCTCAAAGTGGGTGAAGGCCTGTTGAAAAAACCAGTTTCTAGGGTTAATTTGGAGACTGGCAGGGTCGAGCCTTCAAAACACGAGTCCAATGAAGAGGCTCTCACTAGGTTTGCAAAATTATTATCTGAAGAGAAGTGGCTTCGCCTCGCAAAGTCGCCTGTTGGACATGCCGCAAGGCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

336

Amino Acids

36.98

Weight (kDa)

7.15

Isoelectric Point (pI)

28.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 597
AccB1I GGYRCC 1 cut(s) 41
AciI CCGC 5 cut(s) 28, 432, 495, 639, 993
AcsI RAATTY 2 cut(s) 750, 808
AcuI CTGAAG 1 cut(s) 969
AfiI CCNNNNNNNGG 3 cut(s) 38, 147, 730
AgsI TTSAA 4 cut(s) 383, 586, 847, 897
AjuI GAANNNNNNNTTGG 2 cut(s) 262, 294
AluBI AGCT 5 cut(s) 262, 285, 350, 371, 578
AluI AGCT 5 cut(s) 262, 285, 350, 371, 578
Alw26I GTCTC 1 cut(s) 869
AoxI GGCC 3 cut(s) 149, 838, 998
ApeKI GCWGC 3 cut(s) 350, 440, 605
ApoI RAATTY 2 cut(s) 750, 808
ArsI GACNNNNNNTTYG 2 cut(s) 890, 922
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 304, 482, 845
AsuII TTCGAA 1 cut(s) 748
BanI GGYRCC 1 cut(s) 41
BauI CACGAG 1 cut(s) 902
BbvCI CCTCAGC 1 cut(s) 346
BbvI GCAGC 3 cut(s) 337, 427, 617
BccI CCATC 3 cut(s) 155, 313, 422
BcoDI GTCTC 1 cut(s) 869
BfaI CTAG 4 cut(s) 545, 557, 861, 927
BfmI CTRYAG 1 cut(s) 603
BisI GCNGC 4 cut(s) 351, 441, 606, 993
BlsI GCNGC 4 cut(s) 352, 442, 607, 994
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 43, 649
BmsI GCATC 2 cut(s) 223, 304
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 346
Bpu14I TTCGAA 1 cut(s) 748
BsaBI GATNNNNATC 1 cut(s) 699
BsaJI CCNNGG 2 cut(s) 45, 525
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 147, 730
Bse1I ACTGG 4 cut(s) 568, 775, 854, 883
Bse3DI GCAATG 1 cut(s) 336
Bse8I GATNNNNATC 1 cut(s) 699
BseDI CCNNGG 2 cut(s) 45, 525
BseGI GGATG 2 cut(s) 763, 820
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 3 cut(s) 38, 147, 730
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 3 cut(s) 339, 360, 570
BseNI ACTGG 4 cut(s) 568, 775, 854, 883
BseXI GCAGC 3 cut(s) 337, 427, 617
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 3 cut(s) 151, 840, 1000
BshNI GGYRCC 1 cut(s) 41
BslI CCNNNNNNNGG 3 cut(s) 38, 147, 730
BsmAI GTCTC 1 cut(s) 869
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 3 cut(s) 151, 840, 1000
Bsp119I TTCGAA 1 cut(s) 748
Bsp143I GATC 1 cut(s) 817
Bsp19I CCATGG 1 cut(s) 525
BspACI CCGC 5 cut(s) 28, 432, 495, 639, 993
BspANI GGCC 3 cut(s) 151, 840, 1000
BspCNI CTCAG 3 cut(s) 338, 359, 571
BspLI GGNNCC 2 cut(s) 43, 649
BspMAI CTGCAG 1 cut(s) 607
BspT104I TTCGAA 1 cut(s) 748
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 4 cut(s) 568, 775, 854, 883
BssECI CCNNGG 2 cut(s) 45, 525
BssMI GATC 1 cut(s) 817
BssSI CACGAG 1 cut(s) 902
BssT1I CCWWGG 2 cut(s) 45, 525
Bst2BI CACGAG 1 cut(s) 902
Bst4CI ACNGT 1 cut(s) 593
Bst6I CTCTTC 2 cut(s) 909, 945
BstBI TTCGAA 1 cut(s) 748
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 325, 346, 579
BstDSI CCRYGG 1 cut(s) 525
BstF5I GGATG 2 cut(s) 763, 820
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 1 cut(s) 820
BstMAI GTCTC 1 cut(s) 869
BstMBI GATC 1 cut(s) 817
BstMWI GCNNNNNNNGC 2 cut(s) 347, 602
BstNSI RCATGY 1 cut(s) 992
BstSFI CTRYAG 1 cut(s) 603
BstV1I GCAGC 3 cut(s) 337, 427, 617
BsuRI GGCC 3 cut(s) 151, 840, 1000
BtgI CCRYGG 1 cut(s) 525
BtsCI GGATG 2 cut(s) 763, 820
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 598
Cfr13I GGNCC 1 cut(s) 149
CviAII CATG 3 cut(s) 176, 526, 989
DdeI CTNAG 3 cut(s) 325, 346, 579
DpnI GATC 1 cut(s) 819
DpnII GATC 1 cut(s) 817
Eam1104I CTCTTC 2 cut(s) 909, 945
EarI CTCTTC 2 cut(s) 909, 945
Eco130I CCWWGG 2 cut(s) 45, 525
Eco147I AGGCCT 2 cut(s) 840, 1000
Eco32I GATATC 1 cut(s) 552
Eco57I CTGAAG 1 cut(s) 969
EcoRI GAATTC 1 cut(s) 750
EcoRV GATATC 1 cut(s) 552
EcoT14I CCWWGG 2 cut(s) 45, 525
EcoT22I ATGCAT 1 cut(s) 338
ErhI CCWWGG 2 cut(s) 45, 525
FaeI CATG 3 cut(s) 179, 529, 992
FatI CATG 3 cut(s) 175, 525, 988
FauI CCCGC 1 cut(s) 488
FauNDI CATATG 1 cut(s) 332
Fnu4HI GCNGC 4 cut(s) 351, 441, 606, 993
FokI GGATG 2 cut(s) 770, 827
Fsp4HI GCNGC 4 cut(s) 351, 441, 606, 993
FspAI RTGCGCAY 1 cut(s) 597
FspBI CTAG 4 cut(s) 545, 557, 861, 927
FspI TGCGCA 1 cut(s) 597
GlaI GCGC 1 cut(s) 597
GluI GCNGC 4 cut(s) 351, 441, 606, 993
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 3 cut(s) 151, 840, 1000
HhaI GCGC 1 cut(s) 598
Hin1II CATG 3 cut(s) 179, 529, 992
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HincII GTYRAC 1 cut(s) 633
HindII GTYRAC 1 cut(s) 633
HinfI GANTC 1 cut(s) 905
HpaI GTTAAC 1 cut(s) 633
HphI GGTGA 3 cut(s) 304, 482, 845
Hpy166II GTNNAC 3 cut(s) 302, 633, 790
Hpy188I TCNGA 7 cut(s) 117, 219, 328, 453, 685, 733, 949
Hpy188III TCNNGA 1 cut(s) 755
Hpy8I GTNNAC 3 cut(s) 302, 633, 790
HpyAV CCTTC 5 cut(s) 392, 734, 755, 830, 903
HpyCH4III ACNGT 1 cut(s) 593
HpyCH4V TGCA 8 cut(s) 175, 214, 336, 341, 353, 464, 605, 935
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 602
HpyF3I CTNAG 3 cut(s) 325, 346, 579
Hsp92II CATG 3 cut(s) 179, 529, 992
HspAI GCGC 1 cut(s) 596
KspAI GTTAAC 1 cut(s) 633
Kzo9I GATC 1 cut(s) 817
LmnI GCTCC 1 cut(s) 267
Lsp1109I GCAGC 3 cut(s) 337, 427, 617
LweI GCATC 2 cut(s) 223, 304
MaeI CTAG 4 cut(s) 545, 557, 861, 927
MaeIII GTNAC 1 cut(s) 475
MalI GATC 1 cut(s) 819
MboI GATC 1 cut(s) 817
MboII GAAGA 8 cut(s) 79, 502, 515, 774, 812, 817, 926, 962
MfeI CAATTG 2 cut(s) 387, 465
MluCI AATT 9 cut(s) 387, 465, 657, 739, 750, 808, 868, 938, 1003
MlyI GAGTC 1 cut(s) 914
MmeI TCCRAC 2 cut(s) 476, 964
MnlI CCTC 5 cut(s) 77, 283, 355, 910, 977
Mph1103I ATGCAT 1 cut(s) 338
MseI TTAA 6 cut(s) 54, 417, 632, 767, 867, 1006
MspA1I CMGCKG 2 cut(s) 350, 639
MunI CAATTG 2 cut(s) 387, 465
Mva1269I GAATGC 1 cut(s) 598
MwoI GCNNNNNNNGC 2 cut(s) 347, 602
NcoI CCATGG 1 cut(s) 525
NdeI CATATG 1 cut(s) 332
NdeII GATC 1 cut(s) 817
NlaIII CATG 3 cut(s) 179, 529, 992
NlaIV GGNNCC 2 cut(s) 43, 649
NmeAIII GCCGAG 1 cut(s) 548
NmuCI GTSAC 1 cut(s) 475
NsbI TGCGCA 1 cut(s) 597
NsiI ATGCAT 1 cut(s) 338
NspI RCATGY 1 cut(s) 992
NspV TTCGAA 1 cut(s) 748
PceI AGGCCT 2 cut(s) 840, 1000
PctI GAATGC 1 cut(s) 598
PkrI GCNGC 4 cut(s) 352, 442, 607, 994
PleI GAGTC 1 cut(s) 913
PpsI GAGTC 1 cut(s) 913
PspN4I GGNNCC 2 cut(s) 43, 649
PspPI GGNCC 1 cut(s) 149
PstI CTGCAG 1 cut(s) 607
PvuII CAGCTG 1 cut(s) 350
SaqAI TTAA 6 cut(s) 54, 417, 632, 767, 867, 1006
SatI GCNGC 4 cut(s) 351, 441, 606, 993
Sau3AI GATC 1 cut(s) 817
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 914
SfaNI GCATC 2 cut(s) 223, 304
SfcI CTRYAG 1 cut(s) 603
SfuI TTCGAA 1 cut(s) 748
Sse9I AATT 9 cut(s) 387, 465, 657, 739, 750, 808, 868, 938, 1003
SseBI AGGCCT 2 cut(s) 840, 1000
SsiI CCGC 5 cut(s) 28, 432, 495, 639, 993
SspMI CTAG 4 cut(s) 545, 557, 861, 927
StuI AGGCCT 2 cut(s) 840, 1000
StyI CCWWGG 2 cut(s) 45, 525
TaaI ACNGT 1 cut(s) 593
TaqI TCGA 3 cut(s) 693, 748, 888
TasI AATT 9 cut(s) 387, 465, 657, 739, 750, 808, 868, 938, 1003
TauI GCSGC 1 cut(s) 995
Tru1I TTAA 6 cut(s) 54, 417, 632, 767, 867, 1006
Tru9I TTAA 6 cut(s) 54, 417, 632, 767, 867, 1006
TscAI CASTG 1 cut(s) 80
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 3 cut(s) 350, 440, 605
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 2 cut(s) 716, 927
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 1 cut(s) 80
XapI RAATTY 2 cut(s) 750, 808
XceI RCATGY 1 cut(s) 992
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XspI CTAG 4 cut(s) 545, 557, 861, 927
Zsp2I ATGCAT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.