Rmu_sc0001612.1_g000003

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001612.1
OG0000265
Physical Location & Seq
Reverse (-)
16942 .. 17208
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001612.1_g000003.1.cds

Sequence Viewer

Length: 267 bp
atgttgaagcacggctcagaaccaatggatgctaatcgtttgctagtgctatcattgggcacaggcactgccaagttcgaagggaagtacagtgcaaccacggcctcaaaatggggtttgatcaattggatgtttgacaatgggagcacacctatgatcgatatctttaccgatgcaagttcggatatggttgacattcatgtctccactctctttcagtccctcaatgccaaagacaactacctacgtattcaggtgcataaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

88

Amino Acids

9.78

Weight (kDa)

6.24

Isoelectric Point (pI)

17.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 1 cut(s) 7
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 208
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 1 cut(s) 102
AsuII TTCGAA 1 cut(s) 78
BaeGI GKGCMC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 149
BceAI ACGGC 2 cut(s) 28, 117
BclI TGATCA 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 1 cut(s) 44
BmsI GCATC 2 cut(s) 19, 163
Bpu14I TTCGAA 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 248
BsaBI GATNNNNATC 2 cut(s) 33, 161
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse8I GATNNNNATC 2 cut(s) 33, 161
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 34, 135
BseJI GATNNNNATC 2 cut(s) 33, 161
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 62
BshFI GGCC 1 cut(s) 104
BshVI ATCGAT 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 149
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 1 cut(s) 104
Bsp119I TTCGAA 1 cut(s) 78
Bsp1286I GDGCHC 2 cut(s) 62, 149
Bsp143I GATC 2 cut(s) 120, 156
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 29
BspDI ATCGAT 1 cut(s) 159
BspT104I TTCGAA 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 2 cut(s) 120, 156
Bst4CI ACNGT 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 16
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 2 cut(s) 34, 135
BstKTI GATC 2 cut(s) 123, 159
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 2 cut(s) 120, 156
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 62
BstSNI TACGTA 1 cut(s) 248
Bsu15I ATCGAT 1 cut(s) 159
BsuRI GGCC 1 cut(s) 104
BsuTUI ATCGAT 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 2 cut(s) 34, 135
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 97
CaiI CAGNNNCTG 1 cut(s) 68
ClaI ATCGAT 1 cut(s) 159
Csp6I GTAC 1 cut(s) 88
CviAII CATG 1 cut(s) 200
CviJI RGCY 2 cut(s) 15, 104
CviKI_1 RGCY 2 cut(s) 15, 104
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 16
DpnI GATC 2 cut(s) 122, 158
DpnII GATC 2 cut(s) 120, 156
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
Eco105I TACGTA 1 cut(s) 248
Eco32I GATATC 1 cut(s) 163
EcoRV GATATC 1 cut(s) 163
FaeI CATG 1 cut(s) 203
FaiI YATR 4 cut(s) 155, 188, 201, 261
FaqI GGGAC 1 cut(s) 205
FatI CATG 1 cut(s) 199
FbaI TGATCA 1 cut(s) 120
FokI GGATG 2 cut(s) 41, 142
FspBI CTAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 104
Hin1II CATG 1 cut(s) 203
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 2 cut(s) 19, 184
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 3 cut(s) 95, 176, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 2 cut(s) 120, 156
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 2 cut(s) 48, 239
LweI GCATC 2 cut(s) 19, 163
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 247
MalI GATC 2 cut(s) 122, 158
MboI GATC 2 cut(s) 120, 156
MfeI CAATTG 1 cut(s) 124
MhlI GDGCHC 2 cut(s) 62, 149
MluCI AATT 1 cut(s) 124
MnlI CCTC 2 cut(s) 115, 233
MslI CAYNNNNRTG 1 cut(s) 152
MunI CAATTG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 2 cut(s) 120, 156
NlaIII CATG 1 cut(s) 203
NspV TTCGAA 1 cut(s) 78
Ppu21I YACGTR 1 cut(s) 248
PstNI CAGNNNCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 152
Sau3AI GATC 2 cut(s) 120, 156
SduI GDGCHC 2 cut(s) 62, 149
SetI ASST 4 cut(s) 154, 246, 250, 258
SfaNI GCATC 2 cut(s) 19, 163
SfuI TTCGAA 1 cut(s) 78
SgeI CNNG 7 cut(s) 23, 56, 75, 85, 112, 189, 212
SmiMI CAYNNNNRTG 1 cut(s) 152
SnaBI TACGTA 1 cut(s) 248
Sse9I AATT 1 cut(s) 124
SspMI CTAG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 1 cut(s) 250
TaqI TCGA 2 cut(s) 78, 159
TasI AATT 1 cut(s) 124
TatI WGTACW 1 cut(s) 87
TscAI CASTG 2 cut(s) 73, 97
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 2 cut(s) 73, 97
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.