Rh6CG483700

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000265
Physical Location & Seq
Forward (+)
65088525 .. 65088926
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG483700.1

Sequence Viewer

Length: 270 bp
ATGGAAATGAAAATGCAGGATGACACGCTAAGTGGAAAAGTATCTTCGGTGGATGTAGCCACGAAGAAAAATTTGAACGATATCCTAGGAGTTGGAGAAGGCCTATTGAAGAAACCAGTGTCTAGGGTTAATTTGGAGAATGGCAGATTTGAGGCTTCCAATCATGAGACCAACGAAGAGGCTCTTATAAGGTTTGCAAAACTACTCTCTGAAGAGAAGTGGCTTCGCCTTGCAAGGTCGCCTTGCAAGGTCGCCCCACGGAAATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

89

Amino Acids

9.98

Weight (kDa)

9.2

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AcsI RAATTY 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 231
AgsI TTSAA 2 cut(s) 76, 109
Alw26I GTCTC 1 cut(s) 161
AoxI GGCC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 70
AspA2I CCTAGG 1 cut(s) 85
AvrII CCTAGG 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 2 cut(s) 86, 123
BlnI CCTAGG 1 cut(s) 85
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 85, 257
Bse1I ACTGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 85, 257
BseGI GGATG 2 cut(s) 25, 58
BseNI ACTGG 1 cut(s) 116
BshFI GGCC 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 161
BsnI GGCC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 161
BspANI GGCC 1 cut(s) 102
BspHI TCATGA 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 161
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 85, 257
BssT1I CCWWGG 1 cut(s) 85
Bst6I CTCTTC 2 cut(s) 171, 207
BstDEI CTNAG 1 cut(s) 29
BstDSI CCRYGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 25, 58
BstMAI GTCTC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 257
BtsCI GGATG 2 cut(s) 25, 58
BtsIMutI CAGTG 1 cut(s) 123
CciI TCATGA 1 cut(s) 163
CspCI CAANNNNNGTGG 1 cut(s) 246
CviAII CATG 1 cut(s) 164
CviJI RGCY 5 cut(s) 59, 102, 155, 182, 223
CviKI_1 RGCY 5 cut(s) 59, 102, 155, 182, 223
DdeI CTNAG 1 cut(s) 29
Eam1104I CTCTTC 2 cut(s) 171, 207
EarI CTCTTC 2 cut(s) 171, 207
Eco130I CCWWGG 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 161
Eco32I GATATC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 231
EcoRV GATATC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 167
FaiI YATR 2 cut(s) 165, 188
FalI AAGNNNNNCTT 4 cut(s) 168, 200, 226, 258
FatI CATG 1 cut(s) 163
FokI GGATG 2 cut(s) 32, 65
FspBI CTAG 2 cut(s) 86, 123
HaeIII GGCC 1 cut(s) 102
Hin1II CATG 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 92
HpyCH4V TGCA 4 cut(s) 16, 197, 233, 246
HpyF3I CTNAG 1 cut(s) 29
Hsp92II CATG 1 cut(s) 167
LpnPI CCDG 2 cut(s) 2, 129
MaeI CTAG 2 cut(s) 86, 123
MboII GAAGA 5 cut(s) 36, 76, 121, 188, 224
MluCI AATT 3 cut(s) 70, 130, 263
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 2 cut(s) 145, 172
MseI TTAA 1 cut(s) 129
NlaIII CATG 1 cut(s) 167
PagI TCATGA 1 cut(s) 163
PceI AGGCCT 1 cut(s) 102
PsiI TTATAA 1 cut(s) 188
SaqAI TTAA 1 cut(s) 129
SetI ASST 3 cut(s) 194, 239, 252
Sse9I AATT 3 cut(s) 70, 130, 263
SseBI AGGCCT 1 cut(s) 102
SspMI CTAG 2 cut(s) 86, 123
StuI AGGCCT 1 cut(s) 102
StyI CCWWGG 1 cut(s) 85
TasI AATT 3 cut(s) 70, 130, 263
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 1 cut(s) 123
XapI RAATTY 1 cut(s) 70
XmaJI CCTAGG 1 cut(s) 85
XspI CTAG 2 cut(s) 86, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.