Rh6DG470400

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000265
Physical Location & Seq
Forward (+)
63730760 .. 63732667
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG470400.1

Sequence Viewer

Length: 423 bp
ATGGAAAGAACCAAGAGTATACCTCTACAGCCCCCAACCTACGGAAACCTAGTAACTGTTTTGAGCATTGATGGGGGTGGAATAAGAGGCCTTATCCCAGCAGCCATCCTTGATTACCTTGAATCCGAGCTTCAGGATGACACGCTAACTGGGCAAGTATCTTCAGTGGATATAGCAGTAGAGAAGAATTTGAATGATCTTTTGAAAGTTGGTGAAGGCCTATTGAAAAAACCAGTCTCTAGAGTTAATTTAGAGACCGGTAATTATGAGGCTTTTACCGAAGAGACTAATGCAGAGGCTCTTACAAGGTTTGCAAAACTACTGTCTGAAGAGAAGTGGCTTCGTCTTGCTAGGTCCCCCCAGGGACATGCACATGCTATACCTAAATCTAGTCATGATGGCTCTCTTAGTATTAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

140

Amino Acids

15.21

Weight (kDa)

5.37

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 19
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 3 cut(s) 116, 147, 348
AfiI CCNNNNNNNGG 1 cut(s) 41
AgeI ACCGGT 1 cut(s) 257
AgsI TTSAA 4 cut(s) 122, 193, 205, 226
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw26I GTCTC 3 cut(s) 241, 248, 278
AoxI GGCC 2 cut(s) 88, 217
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 187
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AsiGI ACCGGT 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 113
BccI CCATC 3 cut(s) 65, 113, 392
BciT130I CCWGG 1 cut(s) 362
BcoDI GTCTC 3 cut(s) 241, 248, 278
BfaI CTAG 4 cut(s) 50, 240, 351, 390
BfmI CTRYAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 362
Bme18I GGWCC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 362
BmrI ACTGGG 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 159
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 360, 361
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 154, 233
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 2 cut(s) 360, 361
BseGI GGATG 2 cut(s) 105, 142
BseLI CCNNNNNNNGG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 154, 233
BseXI GCAGC 1 cut(s) 113
BseYI CCCAGC 1 cut(s) 97
BshFI GGCC 2 cut(s) 90, 219
BshTI ACCGGT 1 cut(s) 257
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 2 cut(s) 340, 378
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 3 cut(s) 241, 248, 278
BsmFI GGGAC 2 cut(s) 340, 378
BsnI GGCC 2 cut(s) 90, 219
Bso31I GGTCTC 1 cut(s) 248
Bsp143I GATC 1 cut(s) 196
BspANI GGCC 2 cut(s) 90, 219
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 2 cut(s) 154, 233
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 360, 361
BssMI GATC 1 cut(s) 196
BssNAI GTATAC 1 cut(s) 20
Bst1107I GTATAC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 58, 324
Bst6I CTCTTC 2 cut(s) 276, 324
BstDEI CTNAG 1 cut(s) 407
BstF5I GGATG 2 cut(s) 105, 142
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 3 cut(s) 241, 248, 278
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 2 cut(s) 371, 377
BstSCI CCNGG 1 cut(s) 360
BstSFI CTRYAG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 113
BstZ17I GTATAC 1 cut(s) 20
BsuRI GGCC 2 cut(s) 90, 219
BtsCI GGATG 2 cut(s) 105, 142
BtsIMutI CAGTG 1 cut(s) 171
CciI TCATGA 1 cut(s) 394
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 354
CspAI ACCGGT 1 cut(s) 257
CviAII CATG 3 cut(s) 368, 374, 395
CviJI RGCY 9 cut(s) 31, 90, 104, 130, 219, 272, 299, 340, 402
CviKI_1 RGCY 9 cut(s) 31, 90, 104, 130, 219, 272, 299, 340, 402
DdeI CTNAG 1 cut(s) 407
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 276, 324
EarI CTCTTC 2 cut(s) 276, 324
Eco147I AGGCCT 2 cut(s) 90, 219
Eco31I GGTCTC 1 cut(s) 248
Eco47I GGWCC 1 cut(s) 354
Eco57I CTGAAG 3 cut(s) 116, 147, 348
EcoO109I RGGNCCY 1 cut(s) 354
EcoRII CCWGG 1 cut(s) 360
FaeI CATG 3 cut(s) 371, 377, 398
FaiI YATR 7 cut(s) 20, 173, 267, 369, 375, 380, 396
FaqI GGGAC 2 cut(s) 340, 378
FatI CATG 3 cut(s) 367, 373, 394
FblI GTMKAC 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 2 cut(s) 92, 149
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 4 cut(s) 50, 240, 351, 390
GluI GCNGC 1 cut(s) 102
GsaI CCCAGC 1 cut(s) 101
HaeIII GGCC 2 cut(s) 90, 219
HapII CCGG 1 cut(s) 258
Hin1II CATG 3 cut(s) 371, 377, 398
HinfI GANTC 1 cut(s) 122
HpaII CCGG 1 cut(s) 258
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 2 cut(s) 127, 328
Hpy188III TCNNGA 3 cut(s) 134, 240, 395
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 2 cut(s) 58, 324
HpyCH4V TGCA 3 cut(s) 293, 314, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 407
Hsp92II CATG 3 cut(s) 371, 377, 398
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 7 cut(s) 111, 119, 135, 246, 271, 347, 374
Lsp1109I GCAGC 1 cut(s) 113
MaeI CTAG 4 cut(s) 50, 240, 351, 390
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 4 cut(s) 153, 196, 293, 341
MluCI AATT 3 cut(s) 187, 247, 262
MnlI CCTC 4 cut(s) 33, 80, 262, 289
MseI TTAA 2 cut(s) 246, 414
MslI CAYNNNNRTG 1 cut(s) 372
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 362
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 1 cut(s) 196
NlaIII CATG 3 cut(s) 371, 377, 398
NlaIV GGNNCC 1 cut(s) 356
NspI RCATGY 2 cut(s) 371, 377
PagI TCATGA 1 cut(s) 394
PasI CCCWGGG 1 cut(s) 361
PceI AGGCCT 2 cut(s) 90, 219
PfeI GAWTC 1 cut(s) 122
PinAI ACCGGT 1 cut(s) 257
PkrI GCNGC 1 cut(s) 103
PpuMI RGGWCCY 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 354
PspPPI RGGWCCY 1 cut(s) 354
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 2 cut(s) 246, 414
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 362
SetI ASST 8 cut(s) 25, 41, 51, 120, 132, 311, 356, 385
SfcI CTRYAG 1 cut(s) 26
SinI GGWCC 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 372
Sse9I AATT 3 cut(s) 187, 247, 262
SseBI AGGCCT 2 cut(s) 90, 219
SspMI CTAG 4 cut(s) 50, 240, 351, 390
StuI AGGCCT 2 cut(s) 90, 219
StyD4I CCNGG 1 cut(s) 360
TaaI ACNGT 2 cut(s) 58, 324
TasI AATT 3 cut(s) 187, 247, 262
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 2 cut(s) 246, 414
Tru9I TTAA 2 cut(s) 246, 414
TscAI CASTG 1 cut(s) 171
TseI GCWGC 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 354
XapI RAATTY 1 cut(s) 187
XbaI TCTAGA 1 cut(s) 239
XceI RCATGY 2 cut(s) 371, 377
XmiI GTMKAC 1 cut(s) 19
XspI CTAG 4 cut(s) 50, 240, 351, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.