Rh3AG250600

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000265
Physical Location & Seq
Reverse (-)
27004248 .. 27007324
3077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG250600.1

Sequence Viewer

Length: 495 bp
ATGGACTATGGACGATTTCTGGTGATATCCTTAGGAACTGACTCATCGAAAGCTGAACTGAAATACAATGCTCATGTTGCCTCCAAGTGGGGTGTGTGGAATTGGTTAACGAGCGGTGGTTCCACCCCATTGATCAATGCTTTCAGTCAAGCAAGTGCCGCTATGGTCGATTTGCATCTTTCTGTGGTGTTCAAAGCCCTTCACTCGGAGAAAAACTATCTTCGAATTCAGGATCACACACTAAGTGGCGAAGTATCTTCAGTAGATGTAGCAACAGAGAAGAATCTGGACCATCTTCTCAAAGTTGGTGAAGGACTATTGAGACAACCAGTTTCAAGGGTTAATTTAGAGACAGGCAGATTCGAAGCTTGTAATCATGAGACTAATAAAGAGGCTCTTATAAGATCTATGACACGTGGTGTTTTTGCTGATGAAGAAAGTTGGAGAATAGGAGATGTTAAATTTGAAAATACTTCGACTCTCAACAACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

164

Amino Acids

18.24

Weight (kDa)

5.86

Isoelectric Point (pI)

25.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AccBSI CCGCTC 1 cut(s) 114
AciI CCGC 2 cut(s) 114, 159
AclWI GGATC 1 cut(s) 240
AcsI RAATTY 2 cut(s) 225, 461
AcuI CTGAAG 1 cut(s) 243
AcvI CACGTG 1 cut(s) 416
AdeI CACNNNGTG 2 cut(s) 245, 419
AfiI CCNNNNNNNGG 2 cut(s) 87, 205
AflIII ACRYGT 1 cut(s) 413
AgsI TTSAA 3 cut(s) 193, 336, 467
AluBI AGCT 2 cut(s) 53, 368
AluI AGCT 2 cut(s) 53, 368
Alw26I GTCTC 3 cut(s) 316, 344, 374
AlwI GGATC 1 cut(s) 240
ApoI RAATTY 2 cut(s) 225, 461
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 34, 320
AsuII TTCGAA 2 cut(s) 223, 363
AvaII GGWCC 1 cut(s) 289
AxyI CCTNAGG 1 cut(s) 31
BbrPI CACGTG 1 cut(s) 416
BccI CCATC 1 cut(s) 300
BclI TGATCA 1 cut(s) 132
BcoDI GTCTC 3 cut(s) 316, 344, 374
BglII AGATCT 1 cut(s) 404
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 121
BmsI GCATC 1 cut(s) 184
Bpu14I TTCGAA 2 cut(s) 223, 363
BsaAI YACGTR 1 cut(s) 416
BsaBI GATNNNNATC 1 cut(s) 174
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 205
Bse1I ACTGG 1 cut(s) 329
Bse21I CCTNAGG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 174
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 2 cut(s) 87, 205
BseNI ACTGG 1 cut(s) 329
BslI CCNNNNNNNGG 2 cut(s) 87, 205
BsmAI GTCTC 3 cut(s) 316, 344, 374
Bsp119I TTCGAA 2 cut(s) 223, 363
Bsp143I GATC 3 cut(s) 132, 232, 404
BspACI CCGC 2 cut(s) 114, 159
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 121
BspPI GGATC 1 cut(s) 240
BspT104I TTCGAA 2 cut(s) 223, 363
BsrBI CCGCTC 1 cut(s) 114
BsrI ACTGG 1 cut(s) 329
BssMI GATC 3 cut(s) 132, 232, 404
BstBAI YACGTR 1 cut(s) 416
BstBI TTCGAA 2 cut(s) 223, 363
BstDEI CTNAG 2 cut(s) 31, 242
BstKTI GATC 3 cut(s) 135, 235, 407
BstMAI GTCTC 3 cut(s) 316, 344, 374
BstMBI GATC 3 cut(s) 132, 232, 404
BstMWI GCNNNNNNNGC 2 cut(s) 77, 158
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
Bsu36I CCTNAGG 1 cut(s) 31
CciI TCATGA 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 289
CviAII CATG 2 cut(s) 74, 377
CviJI RGCY 4 cut(s) 53, 197, 368, 395
CviKI_1 RGCY 4 cut(s) 53, 197, 368, 395
DdeI CTNAG 2 cut(s) 31, 242
DpnI GATC 3 cut(s) 134, 234, 406
DpnII GATC 3 cut(s) 132, 232, 404
DraIII CACNNNGTG 2 cut(s) 245, 419
Eco32I GATATC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 243
Eco72I CACGTG 1 cut(s) 416
Eco81I CCTNAGG 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 225
EcoRV GATATC 1 cut(s) 27
FaeI CATG 2 cut(s) 77, 380
FaiI YATR 6 cut(s) 9, 75, 164, 378, 401, 410
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FatI CATG 2 cut(s) 73, 376
FbaI TGATCA 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
Hin1II CATG 2 cut(s) 77, 380
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 366
HinfI GANTC 4 cut(s) 41, 283, 360, 478
HpaI GTTAAC 1 cut(s) 108
HphI GGTGA 2 cut(s) 34, 320
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 3 cut(s) 230, 287, 377
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 2 cut(s) 209, 305
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 158
HpyF3I CTNAG 2 cut(s) 31, 242
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 2 cut(s) 77, 380
Ksp22I TGATCA 1 cut(s) 132
KspAI GTTAAC 1 cut(s) 108
Kzo9I GATC 3 cut(s) 132, 232, 404
LpnPI CCDG 5 cut(s) 5, 215, 272, 339, 342
LweI GCATC 1 cut(s) 184
MaeII ACGT 1 cut(s) 415
MalI GATC 3 cut(s) 134, 234, 406
MbiI CCGCTC 1 cut(s) 114
MboI GATC 3 cut(s) 132, 232, 404
MboII GAAGA 5 cut(s) 212, 249, 287, 292, 446
MflI RGATCY 1 cut(s) 404
MluCI AATT 4 cut(s) 100, 225, 343, 461
MlyI GAGTC 2 cut(s) 35, 472
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 2 cut(s) 91, 385
MseI TTAA 4 cut(s) 107, 342, 459, 493
MwoI GCNNNNNNNGC 2 cut(s) 77, 158
NdeII GATC 3 cut(s) 132, 232, 404
NlaIII CATG 2 cut(s) 77, 380
NlaIV GGNNCC 1 cut(s) 121
NspV TTCGAA 2 cut(s) 223, 363
PagI TCATGA 1 cut(s) 376
PfeI GAWTC 2 cut(s) 283, 360
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 2 cut(s) 35, 472
PmaCI CACGTG 1 cut(s) 416
PmlI CACGTG 1 cut(s) 416
PpsI GAGTC 2 cut(s) 35, 472
Ppu21I YACGTR 1 cut(s) 416
PsiI TTATAA 1 cut(s) 401
PspCI CACGTG 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 289
PsuI RGATCY 1 cut(s) 404
SaqAI TTAA 4 cut(s) 107, 342, 459, 493
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 3 cut(s) 132, 232, 404
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 2 cut(s) 35, 472
SetI ASST 3 cut(s) 55, 370, 418
SfaNI GCATC 1 cut(s) 184
SfuI TTCGAA 2 cut(s) 223, 363
SinI GGWCC 1 cut(s) 289
Sse9I AATT 4 cut(s) 100, 225, 343, 461
SsiI CCGC 2 cut(s) 114, 159
TaiI ACGT 1 cut(s) 418
TaqI TCGA 5 cut(s) 47, 168, 223, 363, 476
TasI AATT 4 cut(s) 100, 225, 343, 461
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 2 cut(s) 283, 360
Tru1I TTAA 4 cut(s) 107, 342, 459, 493
Tru9I TTAA 4 cut(s) 107, 342, 459, 493
TspDTI ATGAA 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 2 cut(s) 225, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.