Rorug06G0358300

Lipolytic acyl hydrolase (LAH)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
50723069 .. 50724055
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0358300.1

Sequence Viewer

Length: 438 bp
ATGAATATTCCATACCTGCAAGTCTTCCCCATAGTCATATCCCAAAAGGGTCTTGATTTTCTGAAGGAATTGCTGGTGACGGAAGCTGTTTCTTCCATAATTCCACTCCAAGTTCCCCAAATTGAGAAATTGATGAGGGTCCCATTTCTGGGGAGTGTTTATATGGTGGTTTCCAATATCACAATATATGTAATCGATGTGAGTTCGTCTTATATTAAGCTGGGTGATGATGGAATTGCTATAATTACTTCGGAGATGACTTGTAATTCGAGCATGAATTGGTATTATTCGTATAGTACTTGGGTTGCGCCGGTTGAGGTTGAGGATGAAGGCAGTGCCTCTGTTCAGGTTCAAGGCGTGGAAGTTGCGCTTACATTAGGCTTGGGGATCCAAGAAGGAACTCTGAAGCTTACCCTAAAGGACTGGTTGTCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

145

Amino Acids

15.99

Weight (kDa)

4.25

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LBP_BPI_CETP PF01273 17 - 140 7.3e-08 LBP / BPI / CETP family, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 24
AclWI GGATC 2 cut(s) 382, 395
AcuI CTGAAG 2 cut(s) 83, 425
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 2 cut(s) 148, 149
AgsI TTSAA 1 cut(s) 353
AhdI GACNNNNNGTC 1 cut(s) 427
AluBI AGCT 3 cut(s) 86, 220, 409
AluI AGCT 3 cut(s) 86, 220, 409
AlwI GGATC 2 cut(s) 382, 395
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
AspLEI GCGC 2 cut(s) 310, 370
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 88, 236
AvaII GGWCC 1 cut(s) 139
BamHI GGATCC 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 16
BccI CCATC 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 24
BmcAI AGTACT 1 cut(s) 298
Bme18I GGWCC 1 cut(s) 139
BmeRI GACNNNNNGTC 1 cut(s) 427
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 3 cut(s) 140, 141, 389
BpiI GAAGAC 1 cut(s) 16
Bsa29I ATCGAT 1 cut(s) 195
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 149
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 428
BseCI ATCGAT 1 cut(s) 195
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 2 cut(s) 148, 149
BseNI ACTGG 1 cut(s) 428
BseYI CCCAGC 1 cut(s) 220
BshVI ATCGAT 1 cut(s) 195
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 148, 149
BsmFI GGGAC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 387
BspDI ATCGAT 1 cut(s) 195
BspLI GGNNCC 3 cut(s) 140, 141, 389
BspMI ACCTGC 1 cut(s) 24
BspPI GGATC 2 cut(s) 382, 395
BsrFI RCCGGY 1 cut(s) 310
BsrI ACTGG 1 cut(s) 428
BssAI RCCGGY 1 cut(s) 310
BssMI GATC 1 cut(s) 387
BstF5I GGATG 1 cut(s) 331
BstHHI GCGC 2 cut(s) 310, 370
BstKTI GATC 1 cut(s) 390
BstMBI GATC 1 cut(s) 387
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
Bsu15I ATCGAT 1 cut(s) 195
BsuTUI ATCGAT 1 cut(s) 195
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 1 cut(s) 340
BveI ACCTGC 1 cut(s) 24
CfoI GCGC 2 cut(s) 310, 370
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 139
ClaI ATCGAT 1 cut(s) 195
Csp6I GTAC 1 cut(s) 297
CviAII CATG 2 cut(s) 274, 432
CviJI RGCY 4 cut(s) 86, 220, 381, 409
CviKI_1 RGCY 4 cut(s) 86, 220, 381, 409
CviQI GTAC 1 cut(s) 297
DpnI GATC 1 cut(s) 389
DpnII GATC 1 cut(s) 387
DriI GACNNNNNGTC 1 cut(s) 427
Eam1105I GACNNNNNGTC 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 2 cut(s) 83, 425
EcoO109I RGGNCCY 1 cut(s) 139
FaeI CATG 2 cut(s) 277, 435
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 273, 431
FokI GGATG 1 cut(s) 338
GlaI GCGC 2 cut(s) 309, 369
GsaI CCCAGC 1 cut(s) 224
HapII CCGG 1 cut(s) 311
HhaI GCGC 2 cut(s) 310, 370
Hin1II CATG 2 cut(s) 277, 435
Hin6I GCGC 2 cut(s) 308, 368
HinP1I GCGC 2 cut(s) 308, 368
HindIII AAGCTT 1 cut(s) 407
HpaII CCGG 1 cut(s) 311
HphI GGTGA 2 cut(s) 88, 236
Hpy188I TCNGA 3 cut(s) 63, 253, 405
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 58, 323, 389
HpyCH4V TGCA 1 cut(s) 19
Hsp92II CATG 2 cut(s) 277, 435
HspAI GCGC 2 cut(s) 308, 368
KflI GGGWCCC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 387
LpnPI CCDG 7 cut(s) 29, 59, 134, 206, 324, 332, 409
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 389
MboI GATC 1 cut(s) 387
MboII GAAGA 2 cut(s) 16, 84
MflI RGATCY 1 cut(s) 387
MluCI AATT 8 cut(s) 68, 99, 120, 128, 234, 243, 265, 277
MnlI CCTC 4 cut(s) 129, 310, 316, 349
MseI TTAA 2 cut(s) 216, 436
MspI CCGG 1 cut(s) 311
NdeII GATC 1 cut(s) 387
NlaIII CATG 2 cut(s) 277, 435
NlaIV GGNNCC 3 cut(s) 140, 141, 389
NmuCI GTSAC 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
PspFI CCCAGC 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 140, 141, 389
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
PsuI RGATCY 1 cut(s) 387
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 216, 436
Sau3AI GATC 1 cut(s) 387
Sau96I GGNCC 1 cut(s) 139
ScaI AGTACT 1 cut(s) 298
SetI ASST 6 cut(s) 18, 88, 222, 321, 351, 411
SinI GGWCC 1 cut(s) 139
Sse9I AATT 8 cut(s) 68, 99, 120, 128, 234, 243, 265, 277
SspI AATATT 1 cut(s) 7
TaqI TCGA 2 cut(s) 195, 269
TasI AATT 8 cut(s) 68, 99, 120, 128, 234, 243, 265, 277
TatI WGTACW 1 cut(s) 296
Tru1I TTAA 2 cut(s) 216, 436
Tru9I TTAA 2 cut(s) 216, 436
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 3 cut(s) 17, 290, 342
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 139
ZrmI AGTACT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.