RLG00000023319

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000265
Physical Location & Seq
Forward (+)
21833723 .. 21836067
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023319

Sequence Viewer

Length: 765 bp
ATGGCATTACAAGCCCCAACCTACGGAAACCTAGTCACTGTTCTGAGCATCGATGGCGGTGGAATAAGAGGCCAAATCCCAGGAACCAGCCAGCTATCTTTTCCAGCTTCAAGGTGCTTAAATTTATGGGGAGGACAAGTGAAAAATAAGCCTTCCTTTGATGCCCTACTCTCGGACATATGTATTGCAACCTCAGCGGCACCAACTTATCTTCCAGCTCATTATTTTGAAACCAACGGCCTAAAAGGAAAAGTTAGAGAATTTCACCTGATAGATGGTGGATTGGCAGCAAATAATCCGACTTTGATTGCTATTGGAACTGGCTCATCGAAAGCTGAACTGAAATACAATGCTCATGTTGCCTCCAAGTGGGGTGTGTGGAATTGGTTAACGAGCGGTGGTTCCACCCCATTGATCAATGCTTTCAGTCAAGCAAGTGCCGATATGGTCGATTTGCATCTTTCTGTGTGTGTTCAAAACCCTCACTCGAAGAAAAACTATCTTCGAATTCAGGATCACACACTAAGTGGCGAAGTATCTTCAGTAGATGTAGCAACAGAGAAGAATCTGGACCATCTTCTTAAAGTTAGTGAAGGACTATTGAGACAACCAGTTTCAAGGGTTAATTTAGAGACAGGCAGATTCGAAGCTTGTAATCATGAGACTAATAAAGAGGCTCTTATAAGGTTTGCAAAATTGCTATCCGAAGAGAAGTGGCTTCGCCTTGCAAGGTCTCCCCATGGACATATTGCAAAGTCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

255

Amino Acids

27.54

Weight (kDa)

8.86

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 49 - 105 1.1e-07 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 683
AccB1I GGYRCC 1 cut(s) 199
AccBSI CCGCTC 1 cut(s) 396
AciI CCGC 3 cut(s) 57, 197, 396
AclWI GGATC 1 cut(s) 522
AcsI RAATTY 3 cut(s) 121, 260, 507
AcuI CTGAAG 1 cut(s) 525
AdeI CACNNNGTG 1 cut(s) 527
AfiI CCNNNNNNNGG 3 cut(s) 23, 172, 369
AgsI TTSAA 4 cut(s) 111, 230, 476, 618
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 5 cut(s) 94, 107, 218, 335, 650
AluI AGCT 5 cut(s) 94, 107, 218, 335, 650
Alw26I GTCTC 4 cut(s) 598, 626, 656, 738
AlwI GGATC 1 cut(s) 522
AoxI GGCC 2 cut(s) 70, 238
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 3 cut(s) 121, 260, 507
AspS9I GGNCC 1 cut(s) 571
AsuHPI GGTGA 1 cut(s) 257
AsuII TTCGAA 2 cut(s) 505, 645
AvaII GGWCC 1 cut(s) 571
BanI GGYRCC 1 cut(s) 199
BbvCI CCTCAGC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 299
BccI CCATC 3 cut(s) 47, 269, 582
BceAI ACGGC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 81
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 4 cut(s) 598, 626, 656, 738
BfaI CTAG 1 cut(s) 32
BisI GCNGC 2 cut(s) 198, 288
BlsI GCNGC 2 cut(s) 199, 289
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 571
BmiI GGNNCC 3 cut(s) 85, 201, 403
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 3 cut(s) 57, 151, 466
Bpu10I CCTNAGC 1 cut(s) 193
Bpu14I TTCGAA 2 cut(s) 505, 645
Bsa29I ATCGAT 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 456
BsaI GGTCTC 1 cut(s) 738
BsaJI CCNNGG 2 cut(s) 79, 739
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 172, 369
Bse1I ACTGG 2 cut(s) 325, 611
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 1 cut(s) 81
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 79, 739
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 3 cut(s) 23, 172, 369
BseMII CTCAG 2 cut(s) 35, 207
BseNI ACTGG 2 cut(s) 325, 611
BseXI GCAGC 1 cut(s) 299
BshFI GGCC 2 cut(s) 72, 240
BshNI GGYRCC 1 cut(s) 199
BshVI ATCGAT 1 cut(s) 51
BslI CCNNNNNNNGG 3 cut(s) 23, 172, 369
BsmAI GTCTC 4 cut(s) 598, 626, 656, 738
BsnI GGCC 2 cut(s) 72, 240
Bso31I GGTCTC 1 cut(s) 738
Bsp119I TTCGAA 2 cut(s) 505, 645
Bsp143I GATC 2 cut(s) 414, 514
Bsp19I CCATGG 1 cut(s) 739
BspACI CCGC 3 cut(s) 57, 197, 396
BspANI GGCC 2 cut(s) 72, 240
BspCNI CTCAG 2 cut(s) 36, 206
BspDI ATCGAT 1 cut(s) 51
BspHI TCATGA 1 cut(s) 658
BspLI GGNNCC 3 cut(s) 85, 201, 403
BspPI GGATC 1 cut(s) 522
BspT104I TTCGAA 2 cut(s) 505, 645
BspT107I GGYRCC 1 cut(s) 199
BspTNI GGTCTC 1 cut(s) 738
BsrBI CCGCTC 1 cut(s) 396
BsrI ACTGG 2 cut(s) 325, 611
BssECI CCNNGG 2 cut(s) 79, 739
BssMI GATC 2 cut(s) 414, 514
BssT1I CCWWGG 1 cut(s) 739
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 702
BstBI TTCGAA 2 cut(s) 505, 645
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 3 cut(s) 44, 193, 524
BstDSI CCRYGG 1 cut(s) 739
BstKTI GATC 2 cut(s) 417, 517
BstMAI GTCTC 4 cut(s) 598, 626, 656, 738
BstMBI GATC 2 cut(s) 414, 514
BstMWI GCNNNNNNNGC 4 cut(s) 11, 54, 194, 359
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 299
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 2 cut(s) 72, 240
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 739
BtsIMutI CAGTG 2 cut(s) 36, 760
Cac8I GCNNGC 1 cut(s) 92
CciI TCATGA 1 cut(s) 658
Cfr13I GGNCC 1 cut(s) 571
ClaI ATCGAT 1 cut(s) 51
CviAII CATG 3 cut(s) 356, 659, 740
DdeI CTNAG 3 cut(s) 44, 193, 524
DpnI GATC 2 cut(s) 416, 516
DpnII GATC 2 cut(s) 414, 514
DraIII CACNNNGTG 1 cut(s) 527
Eam1104I CTCTTC 1 cut(s) 702
EarI CTCTTC 1 cut(s) 702
Eco130I CCWWGG 1 cut(s) 739
Eco31I GGTCTC 1 cut(s) 738
Eco47I GGWCC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 525
EcoRI GAATTC 1 cut(s) 507
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 739
ErhI CCWWGG 1 cut(s) 739
FaeI CATG 3 cut(s) 359, 662, 743
FaiI YATR 9 cut(s) 127, 179, 181, 357, 446, 660, 683, 741, 747
FalI AAGNNNNNCTT 4 cut(s) 140, 172, 663, 695
FatI CATG 3 cut(s) 355, 658, 739
FauNDI CATATG 1 cut(s) 179
FbaI TGATCA 1 cut(s) 414
Fnu4HI GCNGC 2 cut(s) 198, 288
Fsp4HI GCNGC 2 cut(s) 198, 288
FspBI CTAG 1 cut(s) 32
GluI GCNGC 2 cut(s) 198, 288
HaeIII GGCC 2 cut(s) 72, 240
Hin1II CATG 3 cut(s) 359, 662, 743
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HindIII AAGCTT 1 cut(s) 648
HinfI GANTC 2 cut(s) 565, 642
HpaI GTTAAC 1 cut(s) 390
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 390
Hpy188I TCNGA 4 cut(s) 45, 175, 300, 706
Hpy188III TCNNGA 3 cut(s) 512, 569, 659
Hpy8I GTNNAC 1 cut(s) 390
HpyAV CCTTC 2 cut(s) 162, 587
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 5 cut(s) 188, 457, 692, 728, 752
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 54, 194, 359
HpyF3I CTNAG 3 cut(s) 44, 193, 524
Hsp92II CATG 3 cut(s) 359, 662, 743
Ksp22I TGATCA 1 cut(s) 414
KspAI GTTAAC 1 cut(s) 390
Kzo9I GATC 2 cut(s) 414, 514
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 3 cut(s) 57, 151, 466
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 416, 516
MbiI CCGCTC 1 cut(s) 396
MboI GATC 2 cut(s) 414, 514
MboII GAAGA 7 cut(s) 203, 494, 502, 531, 569, 574, 719
MluCI AATT 6 cut(s) 121, 260, 382, 507, 625, 695
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 6 cut(s) 62, 125, 202, 373, 492, 667
MseI TTAA 4 cut(s) 119, 389, 582, 624
MspA1I CMGCKG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 4 cut(s) 11, 54, 194, 359
NcoI CCATGG 1 cut(s) 739
NdeI CATATG 1 cut(s) 179
NdeII GATC 2 cut(s) 414, 514
NlaIII CATG 3 cut(s) 359, 662, 743
NlaIV GGNNCC 3 cut(s) 85, 201, 403
NmuCI GTSAC 1 cut(s) 34
NspV TTCGAA 2 cut(s) 505, 645
PagI TCATGA 1 cut(s) 658
PfeI GAWTC 2 cut(s) 565, 642
PkrI GCNGC 2 cut(s) 199, 289
PsiI TTATAA 1 cut(s) 683
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 3 cut(s) 85, 201, 403
PspPI GGNCC 1 cut(s) 571
SaqAI TTAA 4 cut(s) 119, 389, 582, 624
SatI GCNGC 2 cut(s) 198, 288
Sau3AI GATC 2 cut(s) 414, 514
Sau96I GGNCC 1 cut(s) 571
ScrFI CCNGG 1 cut(s) 81
SfaNI GCATC 3 cut(s) 57, 151, 466
SfuI TTCGAA 2 cut(s) 505, 645
SinI GGWCC 1 cut(s) 571
Sse9I AATT 6 cut(s) 121, 260, 382, 507, 625, 695
SsiI CCGC 3 cut(s) 57, 197, 396
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 6 cut(s) 51, 329, 450, 488, 505, 645
TasI AATT 6 cut(s) 121, 260, 382, 507, 625, 695
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 2 cut(s) 565, 642
Tru1I TTAA 4 cut(s) 119, 389, 582, 624
Tru9I TTAA 4 cut(s) 119, 389, 582, 624
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 3 cut(s) 121, 260, 507
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.