Rmu_co8005452.1_g000001

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8005452.1
OG0000265
Physical Location & Seq
Forward (+)
78 .. 428
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8005452.1_g000001.1.cds

Sequence Viewer

Length: 351 bp
atgttgaagcacgactcagagccattggatgccactcggttactagtgctctcattgggcaccggctccgccaagtctgaagggaagtacacctcagccgaggcctcaaaatggggtttgatcaattggttgtttaacaatgggagcacacctttggttgacatgtttggcgatgcgagtgctgatatggttgacattcatgtctccactctgttccagtcccacaattgcaacgataactacatacgcatacaggtgaacagagtttgtcaacatagtgcatgcatgtttgcaatgcttctgtacgaactacgaagtgcttttagttccagaagcacttactatgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

116

Amino Acids

12.98

Weight (kDa)

5.71

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 59
AciI CCGC 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 89, 305
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 1 cut(s) 7
AhlI ACTAGT 1 cut(s) 43
Alw21I GWGCWC 2 cut(s) 51, 149
Alw26I GTCTC 1 cut(s) 208
AoxI GGCC 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 51, 149
BbvCI CCTCAGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BclI TGATCA 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 208
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 61, 67
BmsI GCATC 2 cut(s) 19, 163
Bpu10I CCTNAGC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 2 cut(s) 30, 108
BseNI ACTGG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 62
BshFI GGCC 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 59
BsiHKAI GWGCWC 2 cut(s) 51, 149
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 51, 62, 149
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 2 cut(s) 29, 107
BspLI GGNNCC 2 cut(s) 61, 67
BspT107I GGYRCC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 2 cut(s) 16, 94
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 1 cut(s) 120
BstNSI RCATGY 3 cut(s) 166, 285, 289
BstSLI GKGCMC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 104
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 62
Csp6I GTAC 2 cut(s) 88, 304
CviAII CATG 4 cut(s) 163, 200, 282, 286
CviJI RGCY 4 cut(s) 22, 66, 98, 104
CviKI_1 RGCY 4 cut(s) 22, 66, 98, 104
CviQI GTAC 2 cut(s) 88, 304
DdeI CTNAG 2 cut(s) 16, 94
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EciI GGCGGA 1 cut(s) 58
Eco147I AGGCCT 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 99
EcoT22I ATGCAT 1 cut(s) 287
FaeI CATG 4 cut(s) 166, 203, 285, 289
FaiI YATR 9 cut(s) 164, 188, 201, 245, 251, 276, 283, 287, 345
FaqI GGGAC 1 cut(s) 205
FatI CATG 4 cut(s) 162, 199, 281, 285
FbaI TGATCA 1 cut(s) 120
FokI GGATG 1 cut(s) 41
FspBI CTAG 1 cut(s) 44
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 63
Hin1II CATG 4 cut(s) 166, 203, 285, 289
HincII GTYRAC 3 cut(s) 160, 193, 272
HindII GTYRAC 3 cut(s) 160, 193, 272
HinfI GANTC 1 cut(s) 14
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 5 cut(s) 90, 160, 193, 259, 272
Hpy188I TCNGA 2 cut(s) 19, 79
Hpy188III TCNNGA 1 cut(s) 330
Hpy8I GTNNAC 5 cut(s) 90, 160, 193, 259, 272
HpyAV CCTTC 1 cut(s) 74
HpyCH4V TGCA 4 cut(s) 231, 281, 285, 293
HpyF3I CTNAG 2 cut(s) 16, 94
Hsp92II CATG 4 cut(s) 166, 203, 285, 289
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 71, 144
LpnPI CCDG 4 cut(s) 76, 230, 239, 343
LweI GCATC 2 cut(s) 19, 163
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 39
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MfeI CAATTG 2 cut(s) 124, 226
MhlI GDGCHC 3 cut(s) 51, 62, 149
MluCI AATT 2 cut(s) 124, 226
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 3 cut(s) 94, 103, 115
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 2 cut(s) 135, 349
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 1 cut(s) 63
MunI CAATTG 2 cut(s) 124, 226
NdeII GATC 1 cut(s) 120
NlaIII CATG 4 cut(s) 166, 203, 285, 289
NlaIV GGNNCC 2 cut(s) 61, 67
NmeAIII GCCGAG 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 3 cut(s) 166, 285, 289
PaeI GCATGC 1 cut(s) 285
PceI AGGCCT 1 cut(s) 104
PciI ACATGT 1 cut(s) 162
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PscI ACATGT 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 61, 67
RsaI GTAC 2 cut(s) 89, 305
RsaNI GTAC 2 cut(s) 88, 304
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 2 cut(s) 135, 349
Sau3AI GATC 1 cut(s) 120
SchI GAGTC 1 cut(s) 8
SduI GDGCHC 3 cut(s) 51, 62, 149
SetI ASST 3 cut(s) 95, 154, 258
SfaNI GCATC 2 cut(s) 19, 163
SmiMI CAYNNNNRTG 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 43
SphI GCATGC 1 cut(s) 285
Sse9I AATT 2 cut(s) 124, 226
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 1 cut(s) 69
SspMI CTAG 1 cut(s) 44
StuI AGGCCT 1 cut(s) 104
TasI AATT 2 cut(s) 124, 226
TatI WGTACW 1 cut(s) 87
Tru1I TTAA 2 cut(s) 135, 349
Tru9I TTAA 2 cut(s) 135, 349
TspDTI ATGAA 1 cut(s) 188
XceI RCATGY 3 cut(s) 166, 285, 289
XspI CTAG 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.