RchiOBHm_Chr6g0307241

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000265
Physical Location & Seq
Forward (+)
65735642 .. 65736656
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27624

Sequence Viewer

Length: 666 bp
ATGTGCCTATGCTTAAATTTATGGGGAGGACAGGTGAAAAATAAGCCTTCCTTTGATGCCCTACTCTCGGACATATGTATTGCAACCTCGGTGGCACCAACTTATCTTCCAGCTCATTATTTTGAAACCAACGGCCTAAAAGGAAAAGTTAGAGAATTTCACCTGATAGATGGTGGATTGGCAGCAAATAATCCGACTTTGATTGCTATTGGTGAAGTGACTTTAGTTAAGGGGAGTTCAGACTTCTTTACTATAAAACCAATGGATCGGACTATGGTGATATCCTTAGGAACTGGCTCATCGAAAGCTGAACTGAAATACAATGCTCATGTTGCCTCCAAATGGGGTGTGTGGAATTGGTTAACGAGTGGTGGTTCCACCTCATTGATCAATGCTTTCAGTCAAGCAAGTGCCGCCGATATGGTCGATTTGCATCTTTCTGTGGTGTTCAAAGCCCTTCACTCGGAGAAAAACTATCTTCGAATTCAGTTGAGAGGACTATTGAGACAACCAGTTTCCAGGGTTAATGTAGAGATAGGCAGATTCGAAGCTTGTAATCATGAGACTAATAAAGAGGCTCTTATAAGGTTTGCAAAATTGCTGTCCGAAGAGAAGTGGCTTCGCCTTGCAAGGTCTCCCCATGGACATATTGCAAAGTCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

221

Amino Acids

24.36

Weight (kDa)

9.32

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 15 - 70 6.4e-07 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AccB1I GGYRCC 1 cut(s) 94
AciI CCGC 1 cut(s) 414
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 3 cut(s) 16, 155, 483
AfiI CCNNNNNNNGG 3 cut(s) 67, 342, 463
AgsI TTSAA 2 cut(s) 125, 451
AjnI CCWGG 1 cut(s) 518
AluBI AGCT 3 cut(s) 113, 308, 551
AluI AGCT 3 cut(s) 113, 308, 551
Alw26I GTCTC 3 cut(s) 499, 557, 639
AlwI GGATC 1 cut(s) 273
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 3 cut(s) 16, 155, 483
ArsI GACNNNNNNTTYG 2 cut(s) 587, 619
AsuHPI GGTGA 4 cut(s) 46, 152, 224, 289
AsuII TTCGAA 2 cut(s) 481, 546
AxyI CCTNAGG 1 cut(s) 286
BanI GGYRCC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 520
BclI TGATCA 1 cut(s) 387
BcoDI GTCTC 3 cut(s) 499, 557, 639
BisI GCNGC 2 cut(s) 183, 414
BlsI GCNGC 2 cut(s) 184, 415
Bme1390I CCNGG 1 cut(s) 520
BmiI GGNNCC 2 cut(s) 96, 376
BmrFI CCNGG 1 cut(s) 520
BmsI GCATC 2 cut(s) 46, 442
Bpu14I TTCGAA 2 cut(s) 481, 546
BsaBI GATNNNNATC 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 639
BsaJI CCNNGG 3 cut(s) 87, 519, 640
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 342, 463
Bse1I ACTGG 2 cut(s) 298, 512
Bse21I CCTNAGG 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 1 cut(s) 520
BseDI CCNNGG 3 cut(s) 87, 519, 640
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 3 cut(s) 67, 342, 463
BseNI ACTGG 2 cut(s) 298, 512
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 1 cut(s) 135
BshNI GGYRCC 1 cut(s) 94
BslI CCNNNNNNNGG 3 cut(s) 67, 342, 463
BsmAI GTCTC 3 cut(s) 499, 557, 639
BsnI GGCC 1 cut(s) 135
Bso31I GGTCTC 1 cut(s) 639
Bsp119I TTCGAA 2 cut(s) 481, 546
Bsp143I GATC 2 cut(s) 265, 387
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 1 cut(s) 414
BspANI GGCC 1 cut(s) 135
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 2 cut(s) 96, 376
BspPI GGATC 1 cut(s) 273
BspT104I TTCGAA 2 cut(s) 481, 546
BspT107I GGYRCC 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 639
BsrI ACTGG 2 cut(s) 298, 512
BssECI CCNNGG 3 cut(s) 87, 519, 640
BssMI GATC 2 cut(s) 265, 387
BssT1I CCWWGG 1 cut(s) 640
Bst2UI CCWGG 1 cut(s) 520
Bst6I CTCTTC 1 cut(s) 603
BstBI TTCGAA 2 cut(s) 481, 546
BstDEI CTNAG 1 cut(s) 286
BstDSI CCRYGG 1 cut(s) 640
BstKTI GATC 2 cut(s) 268, 390
BstMAI GTCTC 3 cut(s) 499, 557, 639
BstMBI GATC 2 cut(s) 265, 387
BstMWI GCNNNNNNNGC 2 cut(s) 332, 413
BstNI CCWGG 1 cut(s) 520
BstSCI CCNGG 1 cut(s) 518
BstV1I GCAGC 1 cut(s) 194
Bsu36I CCTNAGG 1 cut(s) 286
BsuRI GGCC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 640
BtsIMutI CAGTG 1 cut(s) 661
CciI TCATGA 1 cut(s) 559
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 3 cut(s) 329, 560, 641
CviJI RGCY 9 cut(s) 46, 113, 135, 297, 308, 455, 551, 578, 619
CviKI_1 RGCY 9 cut(s) 46, 113, 135, 297, 308, 455, 551, 578, 619
DdeI CTNAG 1 cut(s) 286
DpnI GATC 2 cut(s) 267, 389
DpnII GATC 2 cut(s) 265, 387
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 640
Eco31I GGTCTC 1 cut(s) 639
Eco32I GATATC 1 cut(s) 282
Eco81I CCTNAGG 1 cut(s) 286
EcoRI GAATTC 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 518
EcoRV GATATC 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 640
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 3 cut(s) 332, 563, 644
FalI AAGNNNNNCTT 4 cut(s) 35, 67, 564, 596
FatI CATG 3 cut(s) 328, 559, 640
FauNDI CATATG 1 cut(s) 74
FbaI TGATCA 1 cut(s) 387
Fnu4HI GCNGC 2 cut(s) 183, 414
Fsp4HI GCNGC 2 cut(s) 183, 414
GluI GCNGC 2 cut(s) 183, 414
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 3 cut(s) 332, 563, 644
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 1 cut(s) 543
HpaI GTTAAC 1 cut(s) 363
HphI GGTGA 4 cut(s) 46, 152, 224, 289
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 6 cut(s) 70, 195, 241, 270, 466, 607
Hpy188III TCNNGA 1 cut(s) 560
Hpy8I GTNNAC 1 cut(s) 363
HpyAV CCTTC 2 cut(s) 57, 467
HpyCH4V TGCA 5 cut(s) 83, 433, 593, 629, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 413
HpyF3I CTNAG 1 cut(s) 286
Hsp92II CATG 3 cut(s) 332, 563, 644
Ksp22I TGATCA 1 cut(s) 387
KspAI GTTAAC 1 cut(s) 363
Kzo9I GATC 2 cut(s) 265, 387
LpnPI CCDG 7 cut(s) 17, 123, 176, 279, 505, 525, 532
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 2 cut(s) 46, 442
MaeIII GTNAC 1 cut(s) 217
MalI GATC 2 cut(s) 267, 389
MboI GATC 2 cut(s) 265, 387
MboII GAAGA 3 cut(s) 98, 470, 620
MluCI AATT 5 cut(s) 16, 155, 355, 483, 596
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 6 cut(s) 20, 97, 346, 391, 488, 568
MseI TTAA 4 cut(s) 14, 228, 362, 525
MspR9I CCNGG 1 cut(s) 520
MvaI CCWGG 1 cut(s) 520
MwoI GCNNNNNNNGC 2 cut(s) 332, 413
NcoI CCATGG 1 cut(s) 640
NdeI CATATG 1 cut(s) 74
NdeII GATC 2 cut(s) 265, 387
NlaIII CATG 3 cut(s) 332, 563, 644
NlaIV GGNNCC 2 cut(s) 96, 376
NmuCI GTSAC 1 cut(s) 217
NspV TTCGAA 2 cut(s) 481, 546
PagI TCATGA 1 cut(s) 559
PfeI GAWTC 1 cut(s) 543
PkrI GCNGC 2 cut(s) 184, 415
PsiI TTATAA 1 cut(s) 584
Psp6I CCWGG 1 cut(s) 518
PspGI CCWGG 1 cut(s) 518
PspN4I GGNNCC 2 cut(s) 96, 376
SaqAI TTAA 4 cut(s) 14, 228, 362, 525
SatI GCNGC 2 cut(s) 183, 414
Sau3AI GATC 2 cut(s) 265, 387
ScrFI CCNGG 1 cut(s) 520
SetI ASST 9 cut(s) 36, 89, 115, 165, 310, 383, 553, 590, 635
SfaNI GCATC 2 cut(s) 46, 442
SfuI TTCGAA 2 cut(s) 481, 546
Sse9I AATT 5 cut(s) 16, 155, 355, 483, 596
SsiI CCGC 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 518
StyI CCWWGG 1 cut(s) 640
TaqI TCGA 4 cut(s) 302, 426, 481, 546
TasI AATT 5 cut(s) 16, 155, 355, 483, 596
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 1 cut(s) 543
Tru1I TTAA 4 cut(s) 14, 228, 362, 525
Tru9I TTAA 4 cut(s) 14, 228, 362, 525
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 217
XapI RAATTY 3 cut(s) 16, 155, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.