Rmu_sc0010071.1_g000001

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010071.1
OG0000265
Physical Location & Seq
Forward (+)
281 .. 954
674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010071.1_g000001.1.cds

Sequence Viewer

Length: 480 bp
atgttgaagcacgagtcagagcctttggatgccactcggttgctagtgctttcattgggcaccgggtccgccaagtctgaagggaagtacaccgcagccgaggcctcaaaatggggtttgatcaattggttgtttaacaatggaagcacacctttggttgacatgtttggcgattcgagtgctgatatggttgacattcatgtctccattctcttccagtccctcaattgcaacgataactacatacgtattcaggatgataatttgatcggtgaggaggcatcagtggacattgcaacagagaagaatctgaagaggcttgtggagatcggaaatgcgctgttgaagaagcgattgtcaagggtaaatctagatactgggaggtacgaggaatctgagggagaaggtacctacgaagaggcactggtcgattttgccaaacggctcgcggagggaaggaagctcaggcaaaagaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

159

Amino Acids

17.71

Weight (kDa)

5.03

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
Acc65I GGTACC 1 cut(s) 407
AccB1I GGYRCC 2 cut(s) 59, 407
AccII CGCG 1 cut(s) 449
AciI CCGC 3 cut(s) 69, 93, 449
AcuI CTGAAG 2 cut(s) 99, 332
AfaI GTAC 3 cut(s) 89, 386, 409
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 2 cut(s) 7, 346
AluBI AGCT 1 cut(s) 463
AluI AGCT 1 cut(s) 463
Alw26I GTCTC 1 cut(s) 208
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 95
Asp718I GGTACC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 62
BanI GGYRCC 2 cut(s) 59, 407
BauI CACGAG 1 cut(s) 11
BbvI GCAGC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 458
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BclI TGATCA 1 cut(s) 120
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 2 cut(s) 44, 371
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 3 cut(s) 61, 67, 409
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 2 cut(s) 19, 290
BmuI ACTGGG 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 464
BpuMI CCSGG 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 3 cut(s) 217, 382, 429
Bse3DI GCAATG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 34, 262
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 387, 478
BseNI ACTGG 3 cut(s) 217, 382, 429
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 62
BseXI GCAGC 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 449
BshFI GGCC 1 cut(s) 104
BshNI GGYRCC 2 cut(s) 59, 407
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 3 cut(s) 120, 267, 327
BspACI CCGC 3 cut(s) 69, 93, 449
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 2 cut(s) 388, 477
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 3 cut(s) 61, 67, 409
BspT107I GGYRCC 2 cut(s) 59, 407
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 3 cut(s) 217, 382, 429
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 3 cut(s) 120, 267, 327
BssSI CACGAG 1 cut(s) 11
Bst2BI CACGAG 1 cut(s) 11
Bst6I CTCTTC 3 cut(s) 218, 308, 411
BstBAI YACGTR 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 2 cut(s) 396, 464
BstF5I GGATG 2 cut(s) 34, 262
BstFNI CGCG 1 cut(s) 449
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 3 cut(s) 123, 270, 330
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 3 cut(s) 120, 267, 327
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 62
BstSNI TACGTA 1 cut(s) 248
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 1 cut(s) 107
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 2 cut(s) 34, 262
BtsIMutI CAGTG 2 cut(s) 291, 422
Cac8I GCNNGC 1 cut(s) 447
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 66
Csp6I GTAC 3 cut(s) 88, 385, 408
CviAII CATG 2 cut(s) 163, 200
CviJI RGCY 6 cut(s) 22, 98, 104, 319, 445, 463
CviKI_1 RGCY 6 cut(s) 22, 98, 104, 319, 445, 463
CviQI GTAC 3 cut(s) 88, 385, 408
DdeI CTNAG 2 cut(s) 396, 464
DpnI GATC 3 cut(s) 122, 269, 329
DpnII GATC 3 cut(s) 120, 267, 327
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
Eam1104I CTCTTC 3 cut(s) 218, 308, 411
EarI CTCTTC 3 cut(s) 218, 308, 411
EciI GGCGGA 1 cut(s) 58
Eco105I TACGTA 1 cut(s) 248
Eco147I AGGCCT 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 66
Eco57I CTGAAG 2 cut(s) 99, 332
FaeI CATG 2 cut(s) 166, 203
FaiI YATR 4 cut(s) 164, 188, 201, 245
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FaqI GGGAC 1 cut(s) 205
FatI CATG 2 cut(s) 162, 199
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 41, 269
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 2 cut(s) 44, 371
GlaI GCGC 1 cut(s) 339
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 104
HapII CCGG 1 cut(s) 63
HhaI GCGC 1 cut(s) 340
Hin1II CATG 2 cut(s) 166, 203
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HincII GTYRAC 2 cut(s) 160, 193
HindII GTYRAC 2 cut(s) 160, 193
HinfI GANTC 4 cut(s) 14, 173, 307, 392
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 4 cut(s) 90, 160, 193, 289
Hpy188I TCNGA 5 cut(s) 19, 79, 312, 332, 397
Hpy188III TCNNGA 2 cut(s) 254, 371
Hpy8I GTNNAC 4 cut(s) 90, 160, 193, 289
HpyAV CCTTC 3 cut(s) 74, 398, 450
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 2 cut(s) 231, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 2 cut(s) 396, 464
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 2 cut(s) 166, 203
HspAI GCGC 1 cut(s) 338
KpnI GGTACC 1 cut(s) 411
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 3 cut(s) 120, 267, 327
LpnPI CCDG 6 cut(s) 76, 230, 239, 363, 410, 451
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 2 cut(s) 19, 290
MaeI CTAG 2 cut(s) 44, 371
MaeII ACGT 1 cut(s) 247
MalI GATC 3 cut(s) 122, 269, 329
MboI GATC 3 cut(s) 120, 267, 327
MboII GAAGA 5 cut(s) 205, 316, 325, 358, 428
MfeI CAATTG 2 cut(s) 124, 226
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 4 cut(s) 124, 226, 262, 475
MlyI GAGTC 1 cut(s) 23
MseI TTAA 1 cut(s) 135
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 64
MunI CAATTG 2 cut(s) 124, 226
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 1 cut(s) 101
NciI CCSGG 1 cut(s) 64
NdeII GATC 3 cut(s) 120, 267, 327
NlaIII CATG 2 cut(s) 166, 203
NlaIV GGNNCC 3 cut(s) 61, 67, 409
NmeAIII GCCGAG 1 cut(s) 124
NspI RCATGY 1 cut(s) 166
PceI AGGCCT 1 cut(s) 104
PciI ACATGT 1 cut(s) 162
PfeI GAWTC 3 cut(s) 173, 307, 392
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Ppu21I YACGTR 1 cut(s) 248
PscI ACATGT 1 cut(s) 162
PspN4I GGNNCC 3 cut(s) 61, 67, 409
PspPI GGNCC 1 cut(s) 66
RsaI GTAC 3 cut(s) 89, 386, 409
RsaNI GTAC 3 cut(s) 88, 385, 408
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 120, 267, 327
Sau96I GGNCC 1 cut(s) 66
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 1 cut(s) 62
SetI ASST 6 cut(s) 154, 250, 386, 409, 413, 465
SfaNI GCATC 2 cut(s) 19, 290
SinI GGWCC 1 cut(s) 66
SnaBI TACGTA 1 cut(s) 248
Sse9I AATT 4 cut(s) 124, 226, 262, 475
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 3 cut(s) 69, 93, 449
SspMI CTAG 2 cut(s) 44, 371
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 62
TaiI ACGT 1 cut(s) 250
TaqI TCGA 2 cut(s) 176, 429
TasI AATT 4 cut(s) 124, 226, 262, 475
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 3 cut(s) 173, 307, 392
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 2 cut(s) 291, 429
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 42, 188
TspRI CASTG 2 cut(s) 291, 429
VpaK11BI GGWCC 1 cut(s) 66
XbaI TCTAGA 1 cut(s) 370
XceI RCATGY 1 cut(s) 166
XspI CTAG 2 cut(s) 44, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.