Rh2AG174200

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000265
Physical Location & Seq
Reverse (-)
16593432 .. 16611568
18137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG174200.1

Sequence Viewer

Length: 261 bp
ATGCGAAGCACCCCTGCTAGATTCGACATTTACTGTGATGACACATTGAGCCGTGAAGAATCATCAGTGGATATTGCAACCGAGAAGAATCTGGAAAGCCTTGTGGTGATCGGAAACGGGTTGCTAAAGAAGCCAGTGTCAAGGGTGAATATGGATACAGGGAGGTATGAGAAATGTGAGGGAGAAGCCACCTATGAAGTAGCACTAGTCCATTTTGCCATACAGCTCTCGGAGGAAAGGAAGCTCAGACAAACCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

86

Amino Acids

9.77

Weight (kDa)

5.13

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AhlI ACTAGT 1 cut(s) 205
AluBI AGCT 2 cut(s) 226, 244
AluI AGCT 2 cut(s) 226, 244
AsuHPI GGTGA 2 cut(s) 118, 157
BceAI ACGGC 1 cut(s) 36
BciVI GTATCC 1 cut(s) 148
BcuI ACTAGT 1 cut(s) 205
BfaI CTAG 2 cut(s) 18, 206
BfuI GTATCC 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 134
Bsp143I GATC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 258
BsrI ACTGG 1 cut(s) 134
BssMI GATC 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 245
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 130
BsuI GTATCC 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 72, 141
CviJI RGCY 6 cut(s) 51, 99, 133, 188, 226, 244
CviKI_1 RGCY 6 cut(s) 51, 99, 133, 188, 226, 244
DdeI CTNAG 1 cut(s) 245
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
FaiI YATR 4 cut(s) 152, 168, 195, 221
FspBI CTAG 2 cut(s) 18, 206
HinfI GANTC 3 cut(s) 21, 59, 88
HphI GGTGA 2 cut(s) 118, 157
Hpy188I TCNGA 3 cut(s) 113, 232, 248
Hpy188III TCNNGA 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 245
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 4 cut(s) 27, 77, 144, 147
MaeI CTAG 2 cut(s) 18, 206
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 2 cut(s) 68, 97
MfeI CAATTG 1 cut(s) 256
MluCI AATT 1 cut(s) 256
MnlI CCTC 3 cut(s) 156, 172, 226
MunI CAATTG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 1 cut(s) 108
PfeI GAWTC 3 cut(s) 21, 59, 88
Sau3AI GATC 1 cut(s) 108
SetI ASST 4 cut(s) 167, 194, 228, 246
SpeI ACTAGT 1 cut(s) 205
Sse9I AATT 1 cut(s) 256
SspMI CTAG 2 cut(s) 18, 206
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 256
TfiI GAWTC 3 cut(s) 21, 59, 88
TscAI CASTG 2 cut(s) 72, 141
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 2 cut(s) 72, 141
XspI CTAG 2 cut(s) 18, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.