Rorug03G0201600

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000265
Physical Location & Seq
Forward (+)
17750894 .. 17751582
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0201600.1

Sequence Viewer

Length: 384 bp
ATGCTTGGGAAGAAGATGGTGAGCTTCAAAAACCTAGCCAAGAAGGTGAAGGCTGTGGGGGCAACTGGTAGAGAGCCATCACACCATGAATGTCTGCTAAGAGACTCGGAGCAAGGAGGGTCTCCTCCAACCAAACCACCAACTGGGTTCCTGGCAGTTTACGTAGGCGAAGAGCGCCAGAGGTTTGTGGTTCCAACAAGCTTTCTTTCTCATCCACTCTTCAAGATGCTGCTGGAGAAAGCGTACAATGAGTTTGGTTTTCAGCAGAGAAATGGACTCGTGGTTCCTTGCAGCGTCTCGGCTTTCGAAGAGGTTGTCAGTGCTGTGGAATGCAGTCACGGGCAGTTTGATTTTGGAGAACTTGTTGAGGAGTTTATTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

127

Amino Acids

14.05

Weight (kDa)

6.42

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 15 - 108 8.2e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 143
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 2 cut(s) 28, 223
AjnI CCWGG 1 cut(s) 150
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 2 cut(s) 24, 201
AluI AGCT 2 cut(s) 24, 201
Alw26I GTCTC 3 cut(s) 96, 126, 301
ApeKI GCWGC 2 cut(s) 229, 291
ArsI GACNNNNNNTTYG 2 cut(s) 300, 332
AspLEI GCGC 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 31, 58
AsuII TTCGAA 1 cut(s) 306
BauI CACGAG 1 cut(s) 278
BbvI GCAGC 2 cut(s) 216, 303
BccI CCATC 2 cut(s) 10, 85
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 3 cut(s) 96, 126, 301
BfaI CTAG 1 cut(s) 35
BfoI RGCGCY 1 cut(s) 178
BisI GCNGC 2 cut(s) 230, 292
BlsI GCNGC 2 cut(s) 231, 293
Bme1390I CCNGG 1 cut(s) 152
BmiI GGNNCC 3 cut(s) 149, 192, 285
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 254
Bpu14I TTCGAA 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 163
BsaI GGTCTC 1 cut(s) 126
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 348, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 2 cut(s) 70, 148
BseBI CCWGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 70, 148
BseRI GAGGAG 2 cut(s) 114, 383
BseXI GCAGC 2 cut(s) 216, 303
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 3 cut(s) 96, 126, 301
BsmBI CGTCTC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 126
Bsp119I TTCGAA 1 cut(s) 306
BspHI TCATGA 1 cut(s) 380
BspLI GGNNCC 3 cut(s) 149, 192, 285
BspQI GCTCTTC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 126
BsrI ACTGG 2 cut(s) 70, 148
BssSI CACGAG 1 cut(s) 278
Bst2BI CACGAG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 152
Bst6I CTCTTC 3 cut(s) 165, 224, 303
BstBAI YACGTR 1 cut(s) 163
BstBI TTCGAA 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 1 cut(s) 177
BstMAI GTCTC 3 cut(s) 96, 126, 301
BstMWI GCNNNNNNNGC 2 cut(s) 59, 174
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSNI TACGTA 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 216, 303
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 325
CciI TCATGA 1 cut(s) 380
CfoI GCGC 1 cut(s) 177
CseI GACGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 244
CviAII CATG 2 cut(s) 86, 381
CviJI RGCY 6 cut(s) 24, 38, 53, 76, 201, 302
CviKI_1 RGCY 6 cut(s) 24, 38, 53, 76, 201, 302
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 98
Eam1104I CTCTTC 3 cut(s) 165, 224, 303
EarI CTCTTC 3 cut(s) 165, 224, 303
Eco105I TACGTA 1 cut(s) 163
Eco31I GGTCTC 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 2 cut(s) 89, 384
FaiI YATR 2 cut(s) 87, 382
FatI CATG 2 cut(s) 85, 380
Fnu4HI GCNGC 2 cut(s) 230, 292
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 2 cut(s) 230, 292
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 176
GluI GCNGC 2 cut(s) 230, 292
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 1 cut(s) 178
HgaI GACGC 1 cut(s) 283
HhaI GCGC 1 cut(s) 177
Hin1II CATG 2 cut(s) 89, 384
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 2 cut(s) 104, 276
HphI GGTGA 2 cut(s) 31, 58
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 223, 381
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 37, 43
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 291, 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 174
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 89, 384
HspAI GCGC 1 cut(s) 175
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 6 cut(s) 51, 129, 137, 164, 191, 218
Lsp1109I GCAGC 2 cut(s) 216, 303
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 335
MboII GAAGA 5 cut(s) 22, 25, 182, 211, 320
MlyI GAGTC 2 cut(s) 98, 270
MmeI TCCRAC 2 cut(s) 152, 218
MnlI CCTC 5 cut(s) 110, 135, 174, 304, 361
MspR9I CCNGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 59, 174
NlaIII CATG 2 cut(s) 89, 384
NlaIV GGNNCC 3 cut(s) 149, 192, 285
NmeAIII GCCGAG 1 cut(s) 278
NmuCI GTSAC 1 cut(s) 335
NspV TTCGAA 1 cut(s) 306
PagI TCATGA 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 165
PctI GAATGC 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 2 cut(s) 231, 293
PleI GAGTC 2 cut(s) 98, 270
PpsI GAGTC 2 cut(s) 98, 270
Ppu21I YACGTR 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 3 cut(s) 149, 192, 285
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 165
SatI GCNGC 2 cut(s) 230, 292
SchI GAGTC 2 cut(s) 98, 270
ScrFI CCNGG 1 cut(s) 152
SetI ASST 7 cut(s) 26, 36, 48, 165, 185, 203, 315
SfaNI GCATC 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 306
SnaBI TACGTA 1 cut(s) 163
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 150
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 306
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 2 cut(s) 229, 291
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 102, 369
TspRI CASTG 1 cut(s) 325
Van91I CCANNNNNTGG 1 cut(s) 143
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.