RLG00000010711

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000265
Physical Location & Seq
Reverse (-)
3793632 .. 3795533
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010711

Sequence Viewer

Length: 1200 bp
ATGGAAAGAACTGCTAGTATCGCTTTACAGCCCCCAACCTTTGGAAACCTAATCACTGTTCTGAGCATCGACGGCGGTGGAATAAGAGGGCTTATCCCAGGAACCATCCTTGCTTTCCTTGAGTCTGAACTTCAGAAGCTGGACGGTGAAGATGCAAGACTCGCCGACTATTTCGATGTGATTTCTGGGACAAGCACAGGTGGTCTCGTAACTGCCATGCTCACAGCCGCAAATGAGAATGACTACCCACTATTTGCTGCCAAAGATATCAAGGACTTCTACTTGACCCACTCCCCCAAAACCTTCCCCCAGAAGACTGGTTGGCTGTTTCCTCGTGCTAGAAAGATCATCGAAGCTCTAGCAGGACCGAAATACGATGGGAAGTATCTACATGGCTTGGTTAGGGAAAAGCTTGGTGACAAAAAACTGATCCAAACATTGACTAATGTTGTCATTCCTGCATTTGACATAAAGAATCTCCAGCCAGCTATATTTTCCAGCTTCAAGGTGAAAAATAAGCCTTCTTTTGATGCCCTACTTTCGGACATATGTATTGCAACCTCAGCGGCGCCAACTTACCTCCCAGCTCATTATTTTAAAACCAACGGCCTCAAAGGAAAAGTTAGACAATTTCACCTGATAGATGGTGGATTGGCAGCAAATAATCCGACTTTGATTGCTATTGGTGAAGTGACAAAGGAATTAATTAAGGGGAGTTCAGACTTCTTTCCTATAAAACCAATGGACTATGGAAGATTTCTGGTGATATCCTTAGGAACTGGCTCATCGAAAGCTGAACTGAAATACAATGCTCATGTTGCCTCCAAGTGGGGTGTGTTGAATTGGTTAACGAGCGGTGCAAGTGCCGATATGGTCGATTTGCATCTTTATTCTGTGGTTTTCAAAGCCCTTCACTCGGAGAAAAACTATCTTCGAATTCAGGATGACACGCTCTGCGGCGAAGTATCTTCCGTAGATATATATATAGCAACACAGAAGAATCTGGACCATCTTCTCAGAGTTGGTGAAGGACTATTGAACCAAACAGTTTCCAGGGTTAATTTAGAGACAGGCAAATTCGAAGCTTGTAATCATGAGACTAATAAAGAGGCTCTTATAAGGTTTGCAAAATTGCTGTCCGAAGAGAAGTGGCTTCGCCTTGCAAGGTCTCCCCATGGACATATTGCAAAGTCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

400

Amino Acids

43.84

Weight (kDa)

8.83

Isoelectric Point (pI)

26.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 21 - 228 3.7e-25 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1118
AccB1I GGYRCC 1 cut(s) 568
AccB7I CCANNNNNTGG 1 cut(s) 41
AccBSI CCGCTC 1 cut(s) 855
AciI CCGC 5 cut(s) 75, 228, 566, 855, 957
AclWI GGATC 1 cut(s) 424
AcsI RAATTY 2 cut(s) 936, 1076
AcuI CTGAAG 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 569
AfiI CCNNNNNNNGG 4 cut(s) 41, 541, 828, 916
AgsI TTSAA 4 cut(s) 505, 841, 904, 1039
AjnI CCWGG 2 cut(s) 97, 1052
AluBI AGCT 8 cut(s) 139, 356, 412, 488, 501, 587, 794, 1085
AluI AGCT 8 cut(s) 139, 356, 412, 488, 501, 587, 794, 1085
Alw26I GTCTC 4 cut(s) 209, 1061, 1091, 1173
AlwI GGATC 1 cut(s) 424
AlwNI CAGNNNCTG 1 cut(s) 139
AoxI GGCC 1 cut(s) 607
ApeKI GCWGC 2 cut(s) 257, 656
ApoI RAATTY 2 cut(s) 936, 1076
ArsI GACNNNNNNTTYG 2 cut(s) 1121, 1153
AseI ATTAAT 1 cut(s) 704
AspLEI GCGC 1 cut(s) 571
AspS9I GGNCC 2 cut(s) 365, 1006
AsuHPI GGTGA 7 cut(s) 158, 428, 520, 626, 698, 775, 1037
AsuII TTCGAA 2 cut(s) 934, 1080
AvaII GGWCC 2 cut(s) 365, 1006
AxyI CCTNAGG 1 cut(s) 772
BanI GGYRCC 1 cut(s) 568
BauI CACGAG 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 320
BbvCI CCTCAGC 1 cut(s) 562
BbvI GCAGC 2 cut(s) 244, 668
BccI CCATC 4 cut(s) 113, 371, 638, 1017
BceAI ACGGC 2 cut(s) 88, 622
BciT130I CCWGG 2 cut(s) 99, 1054
BcoDI GTCTC 4 cut(s) 209, 1061, 1091, 1173
BfaI CTAG 3 cut(s) 15, 339, 359
BfoI RGCGCY 1 cut(s) 572
BisI GCNGC 5 cut(s) 228, 258, 567, 657, 958
BlsI GCNGC 5 cut(s) 229, 259, 568, 658, 959
Bme1390I CCNGG 2 cut(s) 99, 1054
Bme18I GGWCC 2 cut(s) 365, 1006
BmgT120I GGNCC 2 cut(s) 365, 1006
BmiI GGNNCC 2 cut(s) 103, 570
BmrFI CCNGG 2 cut(s) 99, 1054
BmsI GCATC 4 cut(s) 75, 142, 520, 892
BpiI GAAGAC 1 cut(s) 320
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 562
Bpu14I TTCGAA 2 cut(s) 934, 1080
BpuEI CTTGAG 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 882
BsaHI GRCGYC 1 cut(s) 569
BsaI GGTCTC 2 cut(s) 209, 1173
BsaJI CCNNGG 3 cut(s) 97, 1053, 1174
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 541, 828, 916
Bse1I ACTGG 2 cut(s) 322, 784
Bse21I CCTNAGG 1 cut(s) 772
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 2 cut(s) 99, 1054
BseDI CCNNGG 3 cut(s) 97, 1053, 1174
BseGI GGATG 2 cut(s) 105, 949
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 4 cut(s) 41, 541, 828, 916
BseMII CTCAG 3 cut(s) 53, 576, 1030
BseNI ACTGG 2 cut(s) 322, 784
BseXI GCAGC 2 cut(s) 244, 668
BseYI CCCAGC 1 cut(s) 583
BshFI GGCC 1 cut(s) 609
BshNI GGYRCC 1 cut(s) 568
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 4 cut(s) 41, 541, 828, 916
BsmAI GTCTC 4 cut(s) 209, 1061, 1091, 1173
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 1 cut(s) 609
Bso31I GGTCTC 2 cut(s) 209, 1173
Bsp119I TTCGAA 2 cut(s) 934, 1080
Bsp143I GATC 2 cut(s) 345, 429
Bsp19I CCATGG 1 cut(s) 1174
BspACI CCGC 5 cut(s) 75, 228, 566, 855, 957
BspANI GGCC 1 cut(s) 609
BspCNI CTCAG 3 cut(s) 54, 575, 1029
BspHI TCATGA 1 cut(s) 1093
BspLI GGNNCC 2 cut(s) 103, 570
BspPI GGATC 1 cut(s) 424
BspT104I TTCGAA 2 cut(s) 934, 1080
BspT107I GGYRCC 1 cut(s) 568
BspTNI GGTCTC 2 cut(s) 209, 1173
BsrBI CCGCTC 1 cut(s) 855
BsrI ACTGG 2 cut(s) 322, 784
BssECI CCNNGG 3 cut(s) 97, 1053, 1174
BssMI GATC 2 cut(s) 345, 429
BssNI GRCGYC 1 cut(s) 569
BssSI CACGAG 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 1174
Bst2BI CACGAG 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 99, 1054
Bst4CI ACNGT 3 cut(s) 58, 146, 1048
Bst6I CTCTTC 1 cut(s) 1137
BstACI GRCGYC 1 cut(s) 569
BstBI TTCGAA 2 cut(s) 934, 1080
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 4 cut(s) 62, 562, 772, 1016
BstDSI CCRYGG 1 cut(s) 1174
BstF5I GGATG 2 cut(s) 105, 949
BstH2I RGCGCY 1 cut(s) 572
BstHHI GCGC 1 cut(s) 571
BstKTI GATC 2 cut(s) 348, 432
BstMAI GTCTC 4 cut(s) 209, 1061, 1091, 1173
BstMBI GATC 2 cut(s) 345, 429
BstMWI GCNNNNNNNGC 5 cut(s) 20, 72, 161, 563, 818
BstNI CCWGG 2 cut(s) 99, 1054
BstSCI CCNGG 2 cut(s) 97, 1052
BstV1I GCAGC 2 cut(s) 244, 668
BstV2I GAAGAC 1 cut(s) 320
BstXI CCANNNNNNTGG 1 cut(s) 317
Bsu36I CCTNAGG 1 cut(s) 772
BsuRI GGCC 1 cut(s) 609
BtgI CCRYGG 1 cut(s) 1174
BtsCI GGATG 2 cut(s) 105, 949
BtsIMutI CAGTG 2 cut(s) 54, 1195
Cac8I GCNNGC 1 cut(s) 486
CaiI CAGNNNCTG 1 cut(s) 139
CciI TCATGA 1 cut(s) 1093
CfoI GCGC 1 cut(s) 571
Cfr13I GGNCC 2 cut(s) 365, 1006
CviAII CATG 5 cut(s) 217, 392, 815, 1094, 1175
DdeI CTNAG 4 cut(s) 62, 562, 772, 1016
DinI GGCGCC 1 cut(s) 570
DpnI GATC 2 cut(s) 347, 431
DpnII GATC 2 cut(s) 345, 429
DraI TTTAAA 1 cut(s) 598
Eam1104I CTCTTC 1 cut(s) 1137
EarI CTCTTC 1 cut(s) 1137
Eco130I CCWWGG 1 cut(s) 1174
Eco31I GGTCTC 2 cut(s) 209, 1173
Eco32I GATATC 2 cut(s) 268, 768
Eco47I GGWCC 2 cut(s) 365, 1006
Eco57I CTGAAG 1 cut(s) 116
Eco81I CCTNAGG 1 cut(s) 772
EcoRI GAATTC 1 cut(s) 936
EcoRII CCWGG 2 cut(s) 97, 1052
EcoRV GATATC 2 cut(s) 268, 768
EcoT14I CCWWGG 1 cut(s) 1174
EgeI GGCGCC 1 cut(s) 570
EheI GGCGCC 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 1174
FaeI CATG 5 cut(s) 220, 395, 818, 1097, 1178
FalI AAGNNNNNCTT 2 cut(s) 1098, 1130
FaqI GGGAC 1 cut(s) 202
FatI CATG 5 cut(s) 216, 391, 814, 1093, 1174
FauNDI CATATG 1 cut(s) 548
Fnu4HI GCNGC 5 cut(s) 228, 258, 567, 657, 958
FokI GGATG 2 cut(s) 92, 956
Fsp4HI GCNGC 5 cut(s) 228, 258, 567, 657, 958
FspBI CTAG 3 cut(s) 15, 339, 359
GlaI GCGC 1 cut(s) 570
GluI GCNGC 5 cut(s) 228, 258, 567, 657, 958
GsaI CCCAGC 1 cut(s) 587
GsuI CTGGAG 1 cut(s) 464
HaeII RGCGCY 1 cut(s) 572
HaeIII GGCC 1 cut(s) 609
HhaI GCGC 1 cut(s) 571
Hin1I GRCGYC 1 cut(s) 569
Hin1II CATG 5 cut(s) 220, 395, 818, 1097, 1178
Hin6I GCGC 1 cut(s) 569
HinP1I GCGC 1 cut(s) 569
HincII GTYRAC 1 cut(s) 849
HindII GTYRAC 1 cut(s) 849
HindIII AAGCTT 2 cut(s) 410, 1083
HinfI GANTC 4 cut(s) 122, 159, 475, 1000
HpaI GTTAAC 1 cut(s) 849
HphI GGTGA 7 cut(s) 158, 428, 520, 626, 698, 775, 1037
Hpy166II GTNNAC 1 cut(s) 849
Hpy188I TCNGA 9 cut(s) 63, 127, 135, 544, 669, 721, 919, 1019, 1141
Hpy188III TCNNGA 3 cut(s) 941, 1004, 1094
Hpy8I GTNNAC 1 cut(s) 849
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 4 cut(s) 313, 531, 920, 1022
HpyCH4III ACNGT 3 cut(s) 58, 146, 1048
HpyCH4V TGCA 8 cut(s) 155, 461, 557, 860, 883, 1127, 1163, 1187
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 72, 161, 563, 818
HpyF3I CTNAG 4 cut(s) 62, 562, 772, 1016
Hsp92I GRCGYC 1 cut(s) 569
Hsp92II CATG 5 cut(s) 220, 395, 818, 1097, 1178
HspAI GCGC 1 cut(s) 569
KasI GGCGCC 1 cut(s) 568
KspAI GTTAAC 1 cut(s) 849
Kzo9I GATC 2 cut(s) 345, 429
Lsp1109I GCAGC 2 cut(s) 244, 668
LweI GCATC 4 cut(s) 75, 142, 520, 892
MaeI CTAG 3 cut(s) 15, 339, 359
MaeIII GTNAC 3 cut(s) 208, 416, 691
MalI GATC 2 cut(s) 347, 431
MbiI CCGCTC 1 cut(s) 855
MboI GATC 2 cut(s) 345, 429
MboII GAAGA 8 cut(s) 161, 325, 765, 923, 960, 1004, 1009, 1154
MluCI AATT 8 cut(s) 629, 701, 705, 841, 936, 1060, 1076, 1130
Mly113I GGCGCC 1 cut(s) 569
MlyI GAGTC 2 cut(s) 131, 153
MmeI TCCRAC 1 cut(s) 692
MnlI CCTC 7 cut(s) 80, 342, 571, 590, 620, 832, 1102
MseI TTAA 5 cut(s) 597, 704, 708, 848, 1059
MspA1I CMGCKG 1 cut(s) 566
MspR9I CCNGG 2 cut(s) 99, 1054
MvaI CCWGG 2 cut(s) 99, 1054
MwoI GCNNNNNNNGC 5 cut(s) 20, 72, 161, 563, 818
NarI GGCGCC 1 cut(s) 569
NcoI CCATGG 1 cut(s) 1174
NdeI CATATG 1 cut(s) 548
NdeII GATC 2 cut(s) 345, 429
NlaIII CATG 5 cut(s) 220, 395, 818, 1097, 1178
NlaIV GGNNCC 2 cut(s) 103, 570
NmuCI GTSAC 2 cut(s) 416, 691
NspV TTCGAA 2 cut(s) 934, 1080
PacI TTAATTAA 1 cut(s) 708
PagI TCATGA 1 cut(s) 1093
PfeI GAWTC 2 cut(s) 475, 1000
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 5 cut(s) 229, 259, 568, 658, 959
PleI GAGTC 2 cut(s) 130, 153
PluTI GGCGCC 1 cut(s) 572
PpsI GAGTC 2 cut(s) 130, 153
PshBI ATTAAT 1 cut(s) 704
PsiI TTATAA 1 cut(s) 1118
Psp6I CCWGG 2 cut(s) 97, 1052
PspFI CCCAGC 1 cut(s) 583
PspGI CCWGG 2 cut(s) 97, 1052
PspN4I GGNNCC 2 cut(s) 103, 570
PspPI GGNCC 2 cut(s) 365, 1006
PstNI CAGNNNCTG 1 cut(s) 139
SaqAI TTAA 5 cut(s) 597, 704, 708, 848, 1059
SatI GCNGC 5 cut(s) 228, 258, 567, 657, 958
Sau3AI GATC 2 cut(s) 345, 429
Sau96I GGNCC 2 cut(s) 365, 1006
SchI GAGTC 2 cut(s) 131, 153
ScrFI CCNGG 2 cut(s) 99, 1054
SfaNI GCATC 4 cut(s) 75, 142, 520, 892
SfoI GGCGCC 1 cut(s) 570
SfuI TTCGAA 2 cut(s) 934, 1080
SinI GGWCC 2 cut(s) 365, 1006
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 8 cut(s) 629, 701, 705, 841, 936, 1060, 1076, 1130
SsiI CCGC 5 cut(s) 75, 228, 566, 855, 957
SspDI GGCGCC 1 cut(s) 568
SspMI CTAG 3 cut(s) 15, 339, 359
StyD4I CCNGG 2 cut(s) 97, 1052
StyI CCWWGG 1 cut(s) 1174
TaaI ACNGT 3 cut(s) 58, 146, 1048
TaqI TCGA 7 cut(s) 69, 174, 351, 788, 876, 934, 1080
TaqII GACCGA 1 cut(s) 382
TasI AATT 8 cut(s) 629, 701, 705, 841, 936, 1060, 1076, 1130
TauI GCSGC 3 cut(s) 230, 569, 960
TfiI GAWTC 2 cut(s) 475, 1000
Tru1I TTAA 5 cut(s) 597, 704, 708, 848, 1059
Tru9I TTAA 5 cut(s) 597, 704, 708, 848, 1059
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 2 cut(s) 416, 691
TseI GCWGC 2 cut(s) 257, 656
Tsp45I GTSAC 2 cut(s) 416, 691
TspGWI ACGGA 1 cut(s) 961
TspRI CASTG 1 cut(s) 61
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 2 cut(s) 365, 1006
VspI ATTAAT 1 cut(s) 704
XapI RAATTY 2 cut(s) 936, 1076
XspI CTAG 3 cut(s) 15, 339, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.