Rh2CG181300

Patatin-like phospholipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000265
Physical Location & Seq
Reverse (-)
16674753 .. 16678356
3604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG181300.1

Sequence Viewer

Length: 402 bp
ATGAGAATGTGTGCCTTAATTGGACCAAAATATGATGGCAAGTACCTGAGAAAGATGCTTCGTCAGATACTTGGAGCTAGAAGACTGCACGATACTGTTACACGAATTGTTATACCCACTTTTGACATCAAGCTGCTTCAACCCCATGCCTTCTCAACCTTTGAGGATGACACTTTGAGCGGGGATGTATCGTCGACGGACAAGGCGACGAAGAAGAACTTGAAGGATCTTGTGAAGACTGGTGAGGGTCTGCTGCAGAAACCTGTTTCCAGGATGAATCACGACACTGGGATTTTTGAGCCTGTGGGAAATGAAGGCACCAATGAGAACGCTCTCATTAGGTTTGCAAAATCACTATCAGACGAAAGAAGACTGCGGAAGGAAAGATTCCACCAAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

133

Amino Acids

15.16

Weight (kDa)

9.76

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 317
AccBSI CCGCTC 1 cut(s) 180
AccI GTMKAC 1 cut(s) 194
AciI CCGC 2 cut(s) 180, 376
AclWI GGATC 1 cut(s) 234
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 2 cut(s) 140, 223
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 2 cut(s) 77, 133
AluI AGCT 2 cut(s) 77, 133
AlwI GGATC 1 cut(s) 234
ApeKI GCWGC 2 cut(s) 133, 253
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 254
AvaII GGWCC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 317
BbsI GAAGAC 3 cut(s) 88, 242, 376
BbvI GCAGC 2 cut(s) 120, 240
BccI CCATC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 271
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 254
BisI GCNGC 2 cut(s) 134, 254
BlsI GCNGC 2 cut(s) 135, 255
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 271
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 297
BpiI GAAGAC 3 cut(s) 88, 242, 376
Bse1I ACTGG 2 cut(s) 244, 292
BseBI CCWGG 1 cut(s) 271
BseGI GGATG 3 cut(s) 172, 190, 279
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 2 cut(s) 244, 292
BseXI GCAGC 2 cut(s) 120, 240
BsgI GTGCAG 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 317
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 2 cut(s) 180, 376
BspCNI CTCAG 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 319
BspMAI CTGCAG 1 cut(s) 258
BspPI GGATC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 180
BsrI ACTGG 2 cut(s) 244, 292
BssMI GATC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 3 cut(s) 172, 190, 279
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 120, 240
BstV2I GAAGAC 3 cut(s) 88, 242, 376
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BtsCI GGATG 3 cut(s) 172, 190, 279
BtsIMutI CAGTG 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 146
CviJI RGCY 3 cut(s) 77, 133, 301
CviKI_1 RGCY 3 cut(s) 77, 133, 301
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 47
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 269
FaeI CATG 1 cut(s) 149
FaiI YATR 3 cut(s) 33, 113, 147
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FatI CATG 1 cut(s) 145
FauI CCCGC 1 cut(s) 173
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 2 cut(s) 134, 254
FokI GGATG 3 cut(s) 179, 197, 286
Fsp4HI GCNGC 2 cut(s) 134, 254
FspBI CTAG 1 cut(s) 78
GluI GCNGC 2 cut(s) 134, 254
Hin1II CATG 1 cut(s) 149
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 2 cut(s) 277, 387
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 2 cut(s) 66, 361
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 195
Hpy99I CGWCG 3 cut(s) 196, 199, 211
HpyAV CCTTC 4 cut(s) 160, 217, 308, 373
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 88, 256, 347
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 7 cut(s) 59, 225, 256, 273, 276, 283, 315
Lsp1109I GCAGC 2 cut(s) 120, 240
LweI GCATC 1 cut(s) 45
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 228
MbiI CCGCTC 1 cut(s) 180
MboI GATC 1 cut(s) 226
MboII GAAGA 5 cut(s) 93, 223, 226, 247, 381
MflI RGATCY 1 cut(s) 226
MluCI AATT 2 cut(s) 18, 105
MnlI CCTC 2 cut(s) 157, 238
MseI TTAA 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 271
NdeII GATC 1 cut(s) 226
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PfeI GAWTC 2 cut(s) 277, 387
PfoI TCCNGGA 1 cut(s) 269
PkrI GCNGC 2 cut(s) 135, 255
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 1 cut(s) 23
PstI CTGCAG 1 cut(s) 258
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SalI GTCGAC 1 cut(s) 193
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 2 cut(s) 134, 254
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 271
SetI ASST 6 cut(s) 48, 79, 135, 161, 265, 344
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 254
SgrDI CGTCGACG 1 cut(s) 193
SinI GGWCC 1 cut(s) 23
Sse9I AATT 2 cut(s) 18, 105
SsiI CCGC 2 cut(s) 180, 376
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 194
TasI AATT 2 cut(s) 18, 105
TfiI GAWTC 2 cut(s) 277, 387
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 292
TseI GCWGC 2 cut(s) 133, 253
TspDTI ATGAA 2 cut(s) 290, 327
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.