Rh6BG479000

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000265
Physical Location & Seq
Forward (+)
68499831 .. 68500203
373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG479000.1

Sequence Viewer

Length: 258 bp
ATGGAAATGAACAAACTAAGCGGCGAAGTATCTTCCGTAGATATAGCAACACAGAAGAATCTGGACCATCTTCTCAGAGTTGGTGAAGGACTATTGAACCAATCAGTTTCCAGGGTTAATTTAGAGACAGGCAAATTCGAAGCTTGTAATCATGAGACTAATAAAGAGGCTCTTATAAGGTTTGCAAAATTGCTGTCCGAAGAGAAGTGGCTTCGCCTTGCAAGGTCTCCCCATGGACATATTGCAAAGTCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

85

Amino Acids

9.56

Weight (kDa)

7.97

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AciI CCGC 1 cut(s) 21
AcsI RAATTY 1 cut(s) 134
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 3 cut(s) 119, 149, 231
ApoI RAATTY 1 cut(s) 134
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AspS9I GGNCC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 95
AsuII TTCGAA 1 cut(s) 138
AvaII GGWCC 1 cut(s) 64
BccI CCATC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 112
BcoDI GTCTC 3 cut(s) 119, 149, 231
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 112
Bpu14I TTCGAA 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 111, 232
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 2 cut(s) 111, 232
BseMII CTCAG 1 cut(s) 88
BsmAI GTCTC 3 cut(s) 119, 149, 231
Bso31I GGTCTC 1 cut(s) 231
Bsp119I TTCGAA 1 cut(s) 138
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 87
BspHI TCATGA 1 cut(s) 151
BspT104I TTCGAA 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 231
BssECI CCNNGG 2 cut(s) 111, 232
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 17, 74
BstDSI CCRYGG 1 cut(s) 232
BstMAI GTCTC 3 cut(s) 119, 149, 231
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 253
CciI TCATGA 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 64
CviAII CATG 2 cut(s) 152, 233
CviJI RGCY 3 cut(s) 143, 170, 211
CviKI_1 RGCY 3 cut(s) 143, 170, 211
DdeI CTNAG 2 cut(s) 17, 74
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 2 cut(s) 155, 236
FaiI YATR 5 cut(s) 44, 153, 176, 234, 240
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 2 cut(s) 151, 232
Fnu4HI GCNGC 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 22
Hin1II CATG 2 cut(s) 155, 236
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 1 cut(s) 58
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 77, 199
Hpy188III TCNNGA 2 cut(s) 62, 152
HpyAV CCTTC 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 185, 221, 245
HpyF3I CTNAG 2 cut(s) 17, 74
Hsp92II CATG 2 cut(s) 155, 236
LpnPI CCDG 4 cut(s) 47, 97, 114, 124
MboII GAAGA 4 cut(s) 24, 62, 67, 212
MluCI AATT 3 cut(s) 118, 134, 188
MnlI CCTC 1 cut(s) 160
MseI TTAA 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 112
NcoI CCATGG 1 cut(s) 232
NlaIII CATG 2 cut(s) 155, 236
NspV TTCGAA 1 cut(s) 138
PagI TCATGA 1 cut(s) 151
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 23
PsiI TTATAA 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspPI GGNCC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 112
SetI ASST 3 cut(s) 145, 182, 227
SfuI TTCGAA 1 cut(s) 138
SgeI CNNG 9 cut(s) 74, 123, 124, 141, 156, 164, 230, 234, 245
SinI GGWCC 1 cut(s) 64
Sse9I AATT 3 cut(s) 118, 134, 188
SsiI CCGC 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 232
TaqI TCGA 1 cut(s) 138
TasI AATT 3 cut(s) 118, 134, 188
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.