Rh5DG283200

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000265
Physical Location & Seq
Reverse (-)
34802909 .. 34804302
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG283200.1

Sequence Viewer

Length: 378 bp
ATGAAACCAGGGCCAAAATACGATGGGAAGTATCTGCGCTCATTGACAAACGGGCTGCTTCGTGACCTCACTCTCAAGCAGACTTTAACCAATGTGGTCATTCCAACTTTTGATATCAAACACCTTCAGCCTGTGGTTTTCACAACCATCGACGATGACACATTGAGCGGTGAAGAATCATCAGTGGATATTGCAACCGAGAAGAATCTGGAAAGCCTTGTGGTGATCGGAAACGGGTTGCTAAAGAAGCCAGTGTCAAGGGTGAATATGGATACAGGGAGGTATGAGAAATGTGAGGGAGAAGCCACCTATGAAGAAGCACTAGTCCATTTTGCCATACAGCTCTCAGAAGGAAGGAAGCTCAGACAAACCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

125

Amino Acids

13.97

Weight (kDa)

5.69

Isoelectric Point (pI)

27.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 168
AciI CCGC 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 110
AhlI ACTAGT 1 cut(s) 322
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 2 cut(s) 343, 361
AluI AGCT 2 cut(s) 343, 361
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 3 cut(s) 182, 235, 274
BbvI GCAGC 1 cut(s) 42
BccI CCATC 2 cut(s) 17, 155
BciT130I CCWGG 1 cut(s) 9
BciVI GTATCC 1 cut(s) 265
BcuI ACTAGT 1 cut(s) 322
BfaI CTAG 1 cut(s) 323
BfuI GTATCC 1 cut(s) 265
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 8
BseMII CTCAG 2 cut(s) 360, 376
BseNI ACTGG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 42
BshFI GGCC 1 cut(s) 13
BsnI GGCC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 1 cut(s) 168
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 2 cut(s) 359, 375
BsrBI CCGCTC 1 cut(s) 168
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 346, 362
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 42
BsuI GTATCC 1 cut(s) 265
BsuRI GGCC 1 cut(s) 13
BtsIMutI CAGTG 2 cut(s) 189, 258
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 11
CviJI RGCY 8 cut(s) 13, 55, 130, 216, 250, 305, 343, 361
CviKI_1 RGCY 8 cut(s) 13, 55, 130, 216, 250, 305, 343, 361
DdeI CTNAG 2 cut(s) 346, 362
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 7
EcoRV GATATC 1 cut(s) 115
FaiI YATR 4 cut(s) 269, 285, 312, 338
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 323
GlaI GCGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 56
HaeIII GGCC 1 cut(s) 13
HhaI GCGC 1 cut(s) 39
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HinfI GANTC 2 cut(s) 176, 205
HphI GGTGA 3 cut(s) 182, 235, 274
Hpy188I TCNGA 3 cut(s) 230, 349, 365
Hpy188III TCNNGA 2 cut(s) 62, 209
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 134, 344, 348
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 2 cut(s) 346, 362
HspAI GCGC 1 cut(s) 37
Kzo9I GATC 1 cut(s) 225
LpnPI CCDG 5 cut(s) 21, 144, 194, 261, 264
Lsp1109I GCAGC 1 cut(s) 42
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 62
MalI GATC 1 cut(s) 227
MbiI CCGCTC 1 cut(s) 168
MboI GATC 1 cut(s) 225
MboII GAAGA 3 cut(s) 185, 214, 326
MfeI CAATTG 1 cut(s) 373
MluCI AATT 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 3 cut(s) 77, 273, 289
MseI TTAA 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 9
MunI CAATTG 1 cut(s) 373
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 1 cut(s) 225
NmuCI GTSAC 1 cut(s) 62
PfeI GAWTC 2 cut(s) 176, 205
PkrI GCNGC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspPI GGNCC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 9
SetI ASST 6 cut(s) 69, 126, 284, 311, 345, 363
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 322
Sse9I AATT 1 cut(s) 373
SsiI CCGC 1 cut(s) 168
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 7
TaqI TCGA 1 cut(s) 150
TasI AATT 1 cut(s) 373
TfiI GAWTC 2 cut(s) 176, 205
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 2 cut(s) 189, 258
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 17, 327
TspRI CASTG 2 cut(s) 189, 258
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.