Rh2CG179000

Lipolytic acyl hydrolase (LAH)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
16408946 .. 16410971
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG179000.1

Sequence Viewer

Length: 339 bp
ATGTCCATTGGTTTGGCAAAGAGAAAGATGGTGACAGTTCTGAGCATTGATGGAGGTGGCATTAGAGGCATAATTCCCGGCACCATCCTCGGCTTTCTCGAATCTAAGCTTCAGGATGACACACTGAGCGGAGATGAATCATCAGTGGATATTGCAACCGAGAAGAATCTGAAAAGCCTTGTGGAGATCGGAAATGTGTTGCTGAAGAAGCCAGTGTCAAGGGTAAATCTCGATACTGGGAGGTACGAGGAATCTGAGGGAGACGGTACCTACGAAGAAGCACTGGTCGATTTTGCCAAAGGGCTCGCGGAGGGAAAGAAGCTCGGGCAAAAGAATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

11.94

Weight (kDa)

5.01

Isoelectric Point (pI)

29.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 266
AccB1I GGYRCC 2 cut(s) 80, 266
AccBSI CCGCTC 1 cut(s) 129
AccII CGCG 1 cut(s) 308
AciI CCGC 2 cut(s) 129, 308
AcuI CTGAAG 2 cut(s) 95, 224
AfaI GTAC 2 cut(s) 245, 268
AluBI AGCT 2 cut(s) 109, 322
AluI AGCT 2 cut(s) 109, 322
Alw26I GTCTC 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 323
Asp718I GGTACC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 323
BanI GGYRCC 2 cut(s) 80, 266
BanII GRGCYC 1 cut(s) 306
BccI CCATC 3 cut(s) 22, 44, 92
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 78
BmeT110I CYCGRG 1 cut(s) 323
BmiI GGNNCC 2 cut(s) 82, 268
BmrFI CCNGG 1 cut(s) 78
BmrI ACTGGG 1 cut(s) 246
BmuI ACTGGG 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 88
Bse1I ACTGG 3 cut(s) 212, 241, 288
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 2 cut(s) 84, 121
BseMII CTCAG 3 cut(s) 32, 116, 246
BseNI ACTGG 3 cut(s) 212, 241, 288
Bsh1236I CGCG 1 cut(s) 308
BshNI GGYRCC 2 cut(s) 80, 266
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 255
BsmBI CGTCTC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 1 cut(s) 186
BspACI CCGC 2 cut(s) 129, 308
BspCNI CTCAG 3 cut(s) 33, 117, 247
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 2 cut(s) 82, 268
BspT107I GGYRCC 2 cut(s) 80, 266
BsrBI CCGCTC 1 cut(s) 129
BsrI ACTGG 3 cut(s) 212, 241, 288
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 37, 266
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 4 cut(s) 41, 105, 125, 255
BstF5I GGATG 2 cut(s) 84, 121
BstFNI CGCG 1 cut(s) 308
BstKTI GATC 1 cut(s) 189
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 2 cut(s) 66, 208
BstSCI CCNGG 1 cut(s) 76
BstUI CGCG 1 cut(s) 308
BstXI CCANNNNNNTGG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 84, 121
BtsIMutI CAGTG 4 cut(s) 122, 150, 219, 281
Cac8I GCNNGC 1 cut(s) 306
Csp6I GTAC 2 cut(s) 244, 267
CviJI RGCY 6 cut(s) 93, 109, 177, 211, 304, 322
CviKI_1 RGCY 6 cut(s) 93, 109, 177, 211, 304, 322
CviQI GTAC 2 cut(s) 244, 267
DdeI CTNAG 4 cut(s) 41, 105, 125, 255
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 306
Eco57I CTGAAG 2 cut(s) 95, 224
Eco88I CYCGRG 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 255
FaiI YATR 1 cut(s) 71
FokI GGATG 2 cut(s) 71, 128
FriOI GRGCYC 1 cut(s) 306
HapII CCGG 1 cut(s) 78
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 4 cut(s) 101, 137, 166, 251
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 4 cut(s) 42, 171, 191, 256
Hpy188III TCNNGA 3 cut(s) 98, 113, 230
HpyCH4III ACNGT 2 cut(s) 37, 266
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 208
HpyF3I CTNAG 4 cut(s) 41, 105, 125, 255
KpnI GGTACC 1 cut(s) 270
Kzo9I GATC 1 cut(s) 186
LpnPI CCDG 5 cut(s) 91, 98, 222, 225, 269
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 188
MbiI CCGCTC 1 cut(s) 129
MboI GATC 1 cut(s) 186
MboII GAAGA 3 cut(s) 175, 217, 287
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 2 cut(s) 72, 334
MnlI CCTC 7 cut(s) 47, 59, 98, 234, 241, 250, 304
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 66, 208
NciI CCSGG 1 cut(s) 78
NdeII GATC 1 cut(s) 186
NlaIV GGNNCC 2 cut(s) 82, 268
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 270
PfeI GAWTC 4 cut(s) 101, 137, 166, 251
PspN4I GGNNCC 2 cut(s) 82, 268
RsaI GTAC 2 cut(s) 245, 268
RsaNI GTAC 2 cut(s) 244, 267
Sau3AI GATC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 1 cut(s) 306
SetI ASST 5 cut(s) 58, 111, 245, 272, 324
Sse9I AATT 2 cut(s) 72, 334
SsiI CCGC 2 cut(s) 129, 308
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 37, 266
TaqI TCGA 3 cut(s) 99, 231, 288
TasI AATT 2 cut(s) 72, 334
TfiI GAWTC 4 cut(s) 101, 137, 166, 251
TscAI CASTG 4 cut(s) 129, 150, 219, 288
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 4 cut(s) 129, 150, 219, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.