Rmu_sc0003419.1_g000004

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003419.1
OG0000265
Physical Location & Seq
Forward (+)
7675 .. 8414
740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003419.1_g000004.1.cds

Sequence Viewer

Length: 480 bp
atgttgaagaacaactcagaaccaataaatgcgaatcgcttgcaagtgctgtcattgggcactggcgctgccaagtttgaggagaagtacagtgtagtcgaggcatcaaaatggggtttggtgaattggatgtttaataatggaagcacacctttgctggacatttttggggatgcaagttctgatatggttgactttcatgtctccactctcttccagtccctccatgtcaaggacaattacctacgaattcaggatgacacactgagcggagatgaatcatcagtggatattgcaactgagaagaatctgaaaagccttgtggagatcggaaatgggttgctgaagaagccagtatccagggtaaatcttgatactgggaggtacgaggaatctgagggagaaggtacctacgaagaagcactggtcgattttacgaaacggcttgcagagggaagaaagctcgggcaaaaaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

159

Amino Acids

17.65

Weight (kDa)

4.89

Isoelectric Point (pI)

22.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 200
Acc65I GGTACC 1 cut(s) 407
AccB1I GGYRCC 1 cut(s) 407
AccBSI CCGCTC 1 cut(s) 270
AciI CCGC 1 cut(s) 270
AcsI RAATTY 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 3 cut(s) 89, 386, 409
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 1 cut(s) 7
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 1 cut(s) 463
AluI AGCT 1 cut(s) 463
Alw26I GTCTC 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 464
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 249
Asp718I GGTACC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 407
BbvI GCAGC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 458
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 1 cut(s) 361
BciVI GTATCC 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 208
BfoI RGCGCY 1 cut(s) 69
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 464
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 361
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 2 cut(s) 113, 163
BmuI ACTGGG 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 360
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 5 cut(s) 67, 217, 353, 382, 429
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 3 cut(s) 135, 178, 262
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 4 cut(s) 30, 257, 291, 387
BseNI ACTGG 5 cut(s) 67, 217, 353, 382, 429
BseRI GAGGAG 1 cut(s) 95
BseSI GKGCMC 1 cut(s) 62
BseXI GCAGC 1 cut(s) 55
BshNI GGYRCC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 464
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 205
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 327
BspACI CCGC 1 cut(s) 270
BspCNI CTCAG 4 cut(s) 29, 258, 292, 388
BspLI GGNNCC 1 cut(s) 409
BspT107I GGYRCC 1 cut(s) 407
BsrBI CCGCTC 1 cut(s) 270
BsrI ACTGG 5 cut(s) 67, 217, 353, 382, 429
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 41, 447
BstDEI CTNAG 4 cut(s) 16, 266, 300, 396
BstF5I GGATG 3 cut(s) 135, 178, 262
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 330
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 1 cut(s) 327
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 359
BstSLI GKGCMC 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 55
BsuI GTATCC 1 cut(s) 367
BtsCI GGATG 3 cut(s) 135, 178, 262
BtsIMutI CAGTG 5 cut(s) 60, 97, 263, 291, 422
Cac8I GCNNGC 2 cut(s) 41, 447
CfoI GCGC 1 cut(s) 68
Csp6I GTAC 3 cut(s) 88, 385, 408
CviAII CATG 2 cut(s) 200, 227
CviJI RGCY 4 cut(s) 318, 352, 445, 463
CviKI_1 RGCY 4 cut(s) 318, 352, 445, 463
CviQI GTAC 3 cut(s) 88, 385, 408
DdeI CTNAG 4 cut(s) 16, 266, 300, 396
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 359
FaeI CATG 2 cut(s) 203, 230
FaiI YATR 3 cut(s) 188, 201, 228
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FaqI GGGAC 1 cut(s) 205
FatI CATG 2 cut(s) 199, 226
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 3 cut(s) 142, 185, 269
Fsp4HI GCNGC 1 cut(s) 69
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 69
HhaI GCGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 203, 230
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 4 cut(s) 34, 278, 307, 392
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 5 cut(s) 19, 184, 312, 332, 397
Hpy188III TCNNGA 2 cut(s) 254, 371
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 398
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 4 cut(s) 43, 176, 296, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 4 cut(s) 16, 266, 300, 396
Hsp92II CATG 2 cut(s) 203, 230
HspAI GCGC 1 cut(s) 66
KpnI GGTACC 1 cut(s) 411
Kzo9I GATC 1 cut(s) 327
LpnPI CCDG 9 cut(s) 48, 143, 230, 239, 346, 363, 366, 373, 410
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 113, 163
MalI GATC 1 cut(s) 329
MbiI CCGCTC 1 cut(s) 270
MboI GATC 1 cut(s) 327
MboII GAAGA 6 cut(s) 19, 205, 316, 358, 428, 468
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 4 cut(s) 124, 238, 249, 475
MnlI CCTC 7 cut(s) 73, 94, 233, 375, 382, 391, 445
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 349
NdeII GATC 1 cut(s) 327
NlaIII CATG 2 cut(s) 203, 230
NlaIV GGNNCC 1 cut(s) 409
PfeI GAWTC 4 cut(s) 34, 278, 307, 392
PkrI GCNGC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 409
RsaI GTAC 3 cut(s) 89, 386, 409
RsaNI GTAC 3 cut(s) 88, 385, 408
RseI CAYNNNNRTG 1 cut(s) 109
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 327
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 62
SetI ASST 6 cut(s) 154, 246, 386, 409, 413, 465
SfaNI GCATC 2 cut(s) 113, 163
SmiMI CAYNNNNRTG 1 cut(s) 109
Sse9I AATT 4 cut(s) 124, 238, 249, 475
SsiI CCGC 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 359
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 2 cut(s) 99, 429
TasI AATT 4 cut(s) 124, 238, 249, 475
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 4 cut(s) 34, 278, 307, 392
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 5 cut(s) 67, 97, 270, 291, 429
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 188, 291
TspRI CASTG 5 cut(s) 67, 97, 270, 291, 429
XapI RAATTY 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.