Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000265

Physical Location & Seq

Genomic Coordinates Reverse (-)

28433880 .. 28436132

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG279900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAAAGAACCGAAAGCATCCCACTACAGCCACCAACGTATGGAAACCTAATCACTGTTCTAAGCATTGATGGAGGTGGAATAAGAGCGCTTATCCCAGGAACAATCCTTGCTTTTCTTGAATCCGAGCTTCAGGATGATACGCTAAGTGGACAAGTATCTTCGGTGGATGTAGCCACAAAGAAAAATTTGAACGATCTCCTAGGAGTTGGAGAAGGCCTATTGAAGAAACCAGTGTCTAGGGTTAATTTGGAGAATGGCAGATTTGAGGCTTCCAATCATGAGACCAACGAAGAGGCTCTTATAAGGTTTGCAAAACTACTCTCTGAAGAGAAGGGGCTTCGCCTTGCAAGGTCGCCCCACGGAAAATGTGGCATGCCCATGCCGAACTCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008219 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009626 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0012501 GO:0016020 GO:0016053 GO:0016298 GO:0016787 GO:0016788 GO:0019752 GO:0031407 GO:0031408 GO:0032787 GO:0033554 GO:0034050 GO:0036293 GO:0036294 GO:0042221 GO:0043207 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045087 GO:0046394 GO:0046686 GO:0047372 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0052689 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0072330 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

132

Amino Acids

14.26

Weight (kDa)

5.6

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26560
fragaria_vesca	FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica	MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica	Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis	pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis	RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata	RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora	Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii	Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa	Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha	Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana	Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
AccB7I	CCANNNNNTGG	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	116, 348
AfeI	AGCGCT	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	122, 193, 226
AjnI	CCWGG	1 cut(s)	97
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	278
Aor51HI	AGCGCT	1 cut(s)	90
AoxI	GGCC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	187
AspA2I	CCTAGG	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	91
AvrII	CCTAGG	1 cut(s)	202
BccI	CCATC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	2 cut(s)	203, 240
BfmI	CTRYAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	92
BlnI	CCTAGG	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	97, 202, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	97, 202, 361
BseGI	GGATG	3 cut(s)	18, 142, 175
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	233
BshFI	GGCC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	219
Bso31I	GGTCTC	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	3 cut(s)	97, 202, 361
BssMI	GATC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	288, 324
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	2 cut(s)	62, 146
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	3 cut(s)	18, 142, 175
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	99
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	18, 142, 175
BtsIMutI	CAGTG	2 cut(s)	54, 240
Cac8I	GCNNGC	1 cut(s)	377
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	1 cut(s)	91
CviAII	CATG	3 cut(s)	281, 376, 382
CviJI	RGCY	7 cut(s)	31, 130, 176, 219, 272, 299, 340
CviKI_1	RGCY	7 cut(s)	31, 130, 176, 219, 272, 299, 340
DdeI	CTNAG	2 cut(s)	62, 146
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	288, 324
EarI	CTCTTC	2 cut(s)	288, 324
Eco130I	CCWWGG	1 cut(s)	202
Eco147I	AGGCCT	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	278
Eco47III	AGCGCT	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	116, 348
EcoRII	CCWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	3 cut(s)	284, 379, 385
FaiI	YATR	5 cut(s)	42, 282, 305, 377, 383
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FatI	CATG	3 cut(s)	280, 375, 381
FokI	GGATG	3 cut(s)	5, 149, 182
FspBI	CTAG	2 cut(s)	203, 240
GlaI	GCGC	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	3 cut(s)	284, 379, 385
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	127, 328
Hpy188III	TCNNGA	3 cut(s)	119, 134, 281
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	209, 328
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	314, 350
HpyF3I	CTNAG	2 cut(s)	62, 146
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	3 cut(s)	284, 379, 385
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	4 cut(s)	84, 111, 119, 246
LweI	GCATC	1 cut(s)	27
MaeI	CTAG	2 cut(s)	203, 240
MaeII	ACGT	1 cut(s)	38
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	4 cut(s)	153, 238, 305, 341
MluCI	AATT	2 cut(s)	187, 247
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	3 cut(s)	68, 262, 289
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	284, 379, 385
NspI	RCATGY	1 cut(s)	379
PaeI	GCATGC	1 cut(s)	379
PagI	TCATGA	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	41
PsiI	TTATAA	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	246
Sau3AI	GATC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	6 cut(s)	41, 51, 79, 132, 311, 356
SfaNI	GCATC	1 cut(s)	27
SfcI	CTRYAG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	380
SphI	GCATGC	1 cut(s)	379
Sse9I	AATT	2 cut(s)	187, 247
SseBI	AGGCCT	1 cut(s)	219
SspMI	CTAG	2 cut(s)	203, 240
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	41
TasI	AATT	2 cut(s)	187, 247
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	61, 240
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	61, 240
Van91I	CCANNNNNTGG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XmaJI	CCTAGG	1 cut(s)	202
XspI	CTAG	2 cut(s)	203, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.