Rh6AG468500

Lipolytic acyl hydrolase (LAH)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
65098018 .. 65098438
421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG468500.1

Sequence Viewer

Length: 360 bp
ATGGATCGGACTATGGTGATATCCTTAGGAACTGGCTCATCGAAAGCTGAACTGAAATACAATGCTCATGTTGCCTCCAAATGGGGTGTGTGGAATTGGTTAACGAGTGGTGGTTCCACCTCATTGATCAATGCTTTCAGTCAAGCAAGTGCCGCCGATATGGTCGATTTGCATCTTTCTGTGGTGTTCAAAGCCCTTCACTCGGAGAAAAACTATCTTCGAATTCAGGATGGAAATAAACAAATGCAGGATCACACACTAAGTGGCGAAGTATCTTCAGTAGATATAGCAACAGAGAAGAATCTGGACCATCTTCTCAGAGTTGAGAGGACTATTGAGACAACCAGTTTCCAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.11

Weight (kDa)

6.17

Isoelectric Point (pI)

22.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 153
AclWI GGATC 2 cut(s) 12, 258
AcsI RAATTY 1 cut(s) 222
AcuI CTGAAG 1 cut(s) 261
AdeI CACNNNGTG 1 cut(s) 263
AfiI CCNNNNNNNGG 2 cut(s) 81, 202
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 2 cut(s) 12, 258
ApoI RAATTY 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 28
AsuII TTCGAA 1 cut(s) 220
AvaII GGWCC 1 cut(s) 307
AxyI CCTNAGG 1 cut(s) 25
BccI CCATC 2 cut(s) 224, 318
BciT130I CCWGG 1 cut(s) 353
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 332
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 220
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 352
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 202
Bse1I ACTGG 2 cut(s) 37, 345
Bse21I CCTNAGG 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 1 cut(s) 235
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 81, 202
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 2 cut(s) 37, 345
BslI CCNNNNNNNGG 2 cut(s) 81, 202
BsmAI GTCTC 1 cut(s) 332
Bsp119I TTCGAA 1 cut(s) 220
Bsp143I GATC 3 cut(s) 4, 126, 250
BspACI CCGC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 330
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 2 cut(s) 12, 258
BspT104I TTCGAA 1 cut(s) 220
BsrI ACTGG 2 cut(s) 37, 345
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 3 cut(s) 4, 126, 250
Bst2UI CCWGG 1 cut(s) 353
BstBI TTCGAA 1 cut(s) 220
BstDEI CTNAG 3 cut(s) 25, 260, 317
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 3 cut(s) 7, 129, 253
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 3 cut(s) 4, 126, 250
BstMWI GCNNNNNNNGC 2 cut(s) 71, 152
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 307
CviAII CATG 1 cut(s) 68
CviJI RGCY 3 cut(s) 36, 47, 194
CviKI_1 RGCY 3 cut(s) 36, 47, 194
DdeI CTNAG 3 cut(s) 25, 260, 317
DpnI GATC 3 cut(s) 6, 128, 252
DpnII GATC 3 cut(s) 4, 126, 250
DraIII CACNNNGTG 1 cut(s) 263
Eco32I GATATC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 261
Eco81I CCTNAGG 1 cut(s) 25
EcoRI GAATTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 351
EcoRV GATATC 1 cut(s) 21
FaeI CATG 1 cut(s) 71
FaiI YATR 4 cut(s) 14, 69, 161, 287
FatI CATG 1 cut(s) 67
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
Hin1II CATG 1 cut(s) 71
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 1 cut(s) 301
HpaI GTTAAC 1 cut(s) 102
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 3 cut(s) 9, 205, 320
Hpy188III TCNNGA 2 cut(s) 227, 305
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 206
HpyCH4V TGCA 2 cut(s) 172, 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 152
HpyF3I CTNAG 3 cut(s) 25, 260, 317
Hsp92II CATG 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 126
KspAI GTTAAC 1 cut(s) 102
Kzo9I GATC 3 cut(s) 4, 126, 250
LpnPI CCDG 5 cut(s) 18, 212, 233, 290, 338
LweI GCATC 1 cut(s) 181
MalI GATC 3 cut(s) 6, 128, 252
MboI GATC 3 cut(s) 4, 126, 250
MboII GAAGA 4 cut(s) 209, 267, 305, 310
MluCI AATT 2 cut(s) 94, 222
MnlI CCTC 3 cut(s) 85, 130, 321
MseI TTAA 2 cut(s) 101, 358
MspR9I CCNGG 1 cut(s) 353
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 71, 152
NdeII GATC 3 cut(s) 4, 126, 250
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 1 cut(s) 115
NspV TTCGAA 1 cut(s) 220
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 307
SaqAI TTAA 2 cut(s) 101, 358
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 3 cut(s) 4, 126, 250
Sau96I GGNCC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 353
SetI ASST 2 cut(s) 49, 122
SfaNI GCATC 1 cut(s) 181
SfuI TTCGAA 1 cut(s) 220
SgeI CNNG 9 cut(s) 45, 80, 117, 155, 159, 214, 239, 260, 317
SinI GGWCC 1 cut(s) 307
Sse9I AATT 2 cut(s) 94, 222
SsiI CCGC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 351
TaqI TCGA 3 cut(s) 41, 165, 220
TasI AATT 2 cut(s) 94, 222
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 101, 358
Tru9I TTAA 2 cut(s) 101, 358
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.