Rh2AG174600

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000265
Physical Location & Seq
Reverse (-)
16638230 .. 16642249
4020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG174600.1

Sequence Viewer

Length: 423 bp
ATGGGTCGAAAGAACTTCTTGACATCAATTCAAAGTTTGGTTGGAGCGGTGACCGGACCAAAATACGACGGGAATTACCTGCGCACATTGACGACCGGGCTGCTTGGCGACCTCACAATAAAAGAAACTCTAACCAATGTCATCATCCCAACGTTCGATATCAAACACCTTCAGCCTGTGATTTTCTCAACCATTGATGATGATAATTTGATCGGTGAGGAGGCATCAGTGGACATTGCAAGAGAGAAGAATCTGAAGAGGCTTGTGGAGATCGGAAATGCGCTGTTGAAGAAGCGATTGTCAAGGGTAAATCTCGATACCGGGAGGTACGAGGAATCTGAGGGAGAAGGTACCTACGAAGAAGCACTGGTCGATTTTGCCAAACGGCTCGCGGAGGGAAGGAAGCTCAGGCAAAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

140

Amino Acids

15.67

Weight (kDa)

6.61

Isoelectric Point (pI)

27.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 87
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 350
AccBSI CCGCTC 1 cut(s) 47
AccII CGCG 1 cut(s) 392
AciI CCGC 2 cut(s) 47, 392
AclI AACGTT 1 cut(s) 152
AcuI CTGAAG 2 cut(s) 155, 275
AfaI GTAC 2 cut(s) 329, 352
AgsI TTSAA 2 cut(s) 32, 289
AluBI AGCT 1 cut(s) 406
AluI AGCT 1 cut(s) 406
ApeKI GCWGC 1 cut(s) 100
Asp718I GGTACC 1 cut(s) 350
AspLEI GCGC 2 cut(s) 84, 283
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 2 cut(s) 97, 322
AsuHPI GGTGA 2 cut(s) 61, 227
AvaII GGWCC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 350
BbvI GCAGC 1 cut(s) 87
BceAI ACGGC 1 cut(s) 401
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BcnI CCSGG 2 cut(s) 97, 322
BfuAI ACCTGC 1 cut(s) 87
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme1390I CCNGG 2 cut(s) 97, 322
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 2 cut(s) 97, 322
BmsI GCATC 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 407
BpuMI CCSGG 2 cut(s) 97, 322
BsaWI WCCGGW 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 234
BseGI GGATG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 2 cut(s) 330, 421
BseNI ACTGG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 392
Bsh1285I CGRYCG 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 350
BsiEI CGRYCG 1 cut(s) 96
BsiSI CCGG 3 cut(s) 54, 96, 321
Bsp143I GATC 2 cut(s) 210, 270
BspACI CCGC 2 cut(s) 47, 392
BspCNI CTCAG 2 cut(s) 331, 420
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 1 cut(s) 352
BspMI ACCTGC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 1 cut(s) 372
BssMI GATC 2 cut(s) 210, 270
Bst6I CTCTTC 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 2 cut(s) 339, 407
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 144
BstFNI CGCG 1 cut(s) 392
BstHHI GCGC 2 cut(s) 84, 283
BstKTI GATC 2 cut(s) 213, 273
BstMBI GATC 2 cut(s) 210, 270
BstMCI CGRYCG 1 cut(s) 96
BstPI GGTNACC 1 cut(s) 49
BstSCI CCNGG 2 cut(s) 95, 320
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 234, 365
BveI ACCTGC 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 390
CfoI GCGC 2 cut(s) 84, 283
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 328, 351
CviJI RGCY 5 cut(s) 100, 175, 262, 388, 406
CviKI_1 RGCY 5 cut(s) 100, 175, 262, 388, 406
CviQI GTAC 2 cut(s) 328, 351
DdeI CTNAG 2 cut(s) 339, 407
DpnI GATC 2 cut(s) 212, 272
DpnII GATC 2 cut(s) 210, 270
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 2 cut(s) 155, 275
Eco91I GGTNACC 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 49
EcoRV GATATC 1 cut(s) 160
FalI AAGNNNNNCTT 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 101
FspI TGCGCA 1 cut(s) 83
GlaI GCGC 2 cut(s) 83, 282
GluI GCNGC 1 cut(s) 101
HapII CCGG 3 cut(s) 54, 96, 321
HhaI GCGC 2 cut(s) 84, 283
Hin6I GCGC 2 cut(s) 82, 281
HinP1I GCGC 2 cut(s) 82, 281
HinfI GANTC 2 cut(s) 250, 335
HpaII CCGG 3 cut(s) 54, 96, 321
HphI GGTGA 2 cut(s) 61, 227
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 255, 275, 340
Hpy188III TCNNGA 2 cut(s) 19, 314
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 3 cut(s) 179, 341, 393
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 339, 407
HpySE526I ACGT 1 cut(s) 152
HspAI GCGC 2 cut(s) 82, 281
KpnI GGTACC 1 cut(s) 354
Kzo9I GATC 2 cut(s) 210, 270
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 7 cut(s) 67, 92, 109, 189, 334, 353, 394
Lsp1109I GCAGC 1 cut(s) 87
LweI GCATC 1 cut(s) 233
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 212, 272
MbiI CCGCTC 1 cut(s) 47
MboI GATC 2 cut(s) 210, 270
MboII GAAGA 4 cut(s) 259, 268, 301, 371
MluCI AATT 4 cut(s) 27, 73, 205, 418
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 8 cut(s) 122, 211, 214, 252, 318, 325, 334, 388
MspI CCGG 3 cut(s) 54, 96, 321
MspR9I CCNGG 2 cut(s) 97, 322
MvnI CGCG 1 cut(s) 392
NciI CCSGG 2 cut(s) 97, 322
NdeII GATC 2 cut(s) 210, 270
NlaIV GGNNCC 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 49
NsbI TGCGCA 1 cut(s) 83
PfeI GAWTC 2 cut(s) 250, 335
PkrI GCNGC 1 cut(s) 102
Psp1406I AACGTT 1 cut(s) 152
PspEI GGTNACC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 1 cut(s) 56
RsaI GTAC 2 cut(s) 329, 352
RsaNI GTAC 2 cut(s) 328, 351
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 2 cut(s) 210, 270
Sau96I GGNCC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 97, 322
SetI ASST 8 cut(s) 81, 114, 155, 171, 329, 352, 356, 408
SfaNI GCATC 1 cut(s) 233
SinI GGWCC 1 cut(s) 56
Sse9I AATT 4 cut(s) 27, 73, 205, 418
SsiI CCGC 2 cut(s) 47, 392
StyD4I CCNGG 2 cut(s) 95, 320
TaiI ACGT 1 cut(s) 155
TaqI TCGA 4 cut(s) 7, 156, 315, 372
TasI AATT 4 cut(s) 27, 73, 205, 418
TfiI GAWTC 2 cut(s) 250, 335
TscAI CASTG 2 cut(s) 234, 372
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 49
TspRI CASTG 2 cut(s) 234, 372
VpaK11BI GGWCC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.