Rorug06G0358800

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000265
Physical Location & Seq
Reverse (-)
50748349 .. 50749465
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0358800.1

Sequence Viewer

Length: 513 bp
ATGAGCAAGCTTAGGCCAACATATATCAACATGGGTGTCATCAATTTGAGCCAGGAGTTTACTAGTCCAGTAGATGCAGCAAGATTGTTCAAGGCCTTGATCATCGACTCCCACAACCTCATCCCAAGACTCATGCCTCAGGCCATTAAGAGCATCGAAATCATTCAGGGCGATGGAGGAGCAGGAACCATCAAACAGATCAATTTTGCTGAGGGTACTCGTTTCAAGTACATGAAGAACAGAATAGACACCCTGGATGTAGAAAACTTGATGTGCAAGTACACGCTGATTGAAGGCGATGTATTGGAGGACAAGATTAAGTCTATTGCTTATGAGGTGAGGTTTGTACCTTCTGCAAATGGAGGATGTGTTTGTAAGATGATGAGTGAGTACCAAGCTGTTGGTGACTTTGAGATCAATGAGGAAGAGATCAGGGGTGGCAAGGAAAGAGCAATGGGAATGTACAAAGTAGTTGAAGCTTACCTCTTCGAAAGTCCTGGTGCTTACGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

170

Amino Acids

19.09

Weight (kDa)

5.21

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 11 - 163 1.7e-25 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 6 cut(s) 217, 230, 281, 348, 392, 464
AgsI TTSAA 4 cut(s) 91, 226, 293, 476
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 3 cut(s) 51, 252, 496
AluBI AGCT 3 cut(s) 10, 398, 479
AluI AGCT 3 cut(s) 10, 398, 479
AoxI GGCC 3 cut(s) 14, 93, 141
ApeKI GCWGC 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 162
AsuHPI GGTGA 2 cut(s) 349, 416
AsuII TTCGAA 1 cut(s) 489
AxyI CCTNAGG 1 cut(s) 138
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 167, 197
BciT130I CCWGG 3 cut(s) 53, 254, 498
BclI TGATCA 1 cut(s) 99
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 3 cut(s) 53, 254, 498
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 3 cut(s) 53, 254, 498
BmsI GCATC 2 cut(s) 64, 162
Bpu10I CCTNAGC 2 cut(s) 11, 210
Bpu14I TTCGAA 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bse1I ACTGG 1 cut(s) 68
Bse21I CCTNAGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 459
BseBI CCWGG 3 cut(s) 53, 254, 498
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 3 cut(s) 120, 262, 371
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 2 cut(s) 152, 201
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 89
BshFI GGCC 3 cut(s) 16, 95, 143
BsnI GGCC 3 cut(s) 16, 95, 143
Bsp119I TTCGAA 1 cut(s) 489
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 4 cut(s) 99, 198, 414, 429
BspANI GGCC 3 cut(s) 16, 95, 143
BspCNI CTCAG 2 cut(s) 151, 202
BspLI GGNNCC 1 cut(s) 187
BspT104I TTCGAA 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 459
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 4 cut(s) 99, 198, 414, 429
Bst2UI CCWGG 3 cut(s) 53, 254, 498
Bst6I CTCTTC 2 cut(s) 420, 491
BstAUI TGTACA 1 cut(s) 462
BstBI TTCGAA 1 cut(s) 489
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 3 cut(s) 11, 138, 210
BstF5I GGATG 3 cut(s) 120, 262, 371
BstKTI GATC 4 cut(s) 102, 201, 417, 432
BstMBI GATC 4 cut(s) 99, 198, 414, 429
BstNI CCWGG 3 cut(s) 53, 254, 498
BstSCI CCNGG 3 cut(s) 51, 252, 496
BstV1I GCAGC 1 cut(s) 89
BstXI CCANNNNNNTGG 1 cut(s) 401
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 3 cut(s) 16, 95, 143
BtgZI GCGATG 2 cut(s) 186, 312
BtsCI GGATG 3 cut(s) 120, 262, 371
Cac8I GCNNGC 1 cut(s) 8
Csp6I GTAC 6 cut(s) 216, 229, 280, 347, 391, 463
CviAII CATG 3 cut(s) 31, 133, 232
CviJI RGCY 7 cut(s) 10, 16, 51, 95, 143, 398, 479
CviKI_1 RGCY 7 cut(s) 10, 16, 51, 95, 143, 398, 479
CviQI GTAC 6 cut(s) 216, 229, 280, 347, 391, 463
DdeI CTNAG 3 cut(s) 11, 138, 210
DpnI GATC 4 cut(s) 101, 200, 416, 431
DpnII GATC 4 cut(s) 99, 198, 414, 429
Eam1104I CTCTTC 2 cut(s) 420, 491
EarI CTCTTC 2 cut(s) 420, 491
Eco147I AGGCCT 1 cut(s) 95
Eco81I CCTNAGG 1 cut(s) 138
EcoRII CCWGG 3 cut(s) 51, 252, 496
FaeI CATG 3 cut(s) 34, 136, 235
FaiI YATR 6 cut(s) 22, 24, 32, 134, 233, 333
FatI CATG 3 cut(s) 30, 132, 231
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 3 cut(s) 107, 269, 378
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 3 cut(s) 16, 95, 143
Hin1II CATG 3 cut(s) 34, 136, 235
HindIII AAGCTT 2 cut(s) 8, 477
HinfI GANTC 2 cut(s) 107, 129
HphI GGTGA 2 cut(s) 349, 416
Hpy166II GTNNAC 2 cut(s) 60, 282
Hpy8I GTNNAC 2 cut(s) 60, 282
HpyAV CCTTC 2 cut(s) 287, 360
HpyCH4V TGCA 3 cut(s) 77, 276, 356
HpyF3I CTNAG 3 cut(s) 11, 138, 210
Hsp92II CATG 3 cut(s) 34, 136, 235
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 4 cut(s) 99, 198, 414, 429
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 2 cut(s) 64, 162
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 404
MalI GATC 4 cut(s) 101, 200, 416, 431
MboI GATC 4 cut(s) 99, 198, 414, 429
MboII GAAGA 3 cut(s) 247, 437, 478
MluCI AATT 2 cut(s) 43, 202
MlyI GAGTC 2 cut(s) 101, 123
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 2 cut(s) 147, 318
MspR9I CCNGG 3 cut(s) 53, 254, 498
MvaI CCWGG 3 cut(s) 53, 254, 498
NdeII GATC 4 cut(s) 99, 198, 414, 429
NlaIII CATG 3 cut(s) 34, 136, 235
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 404
NspV TTCGAA 1 cut(s) 489
PceI AGGCCT 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 162
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 2 cut(s) 101, 123
PpsI GAGTC 2 cut(s) 101, 123
Psp6I CCWGG 3 cut(s) 51, 252, 496
PspGI CCWGG 3 cut(s) 51, 252, 496
PspN4I GGNNCC 1 cut(s) 187
RsaI GTAC 6 cut(s) 217, 230, 281, 348, 392, 464
RsaNI GTAC 6 cut(s) 216, 229, 280, 347, 391, 463
SaqAI TTAA 2 cut(s) 147, 318
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 4 cut(s) 99, 198, 414, 429
SchI GAGTC 2 cut(s) 101, 123
ScrFI CCNGG 3 cut(s) 53, 254, 498
SetI ASST 8 cut(s) 12, 120, 339, 344, 352, 400, 481, 486
SfaNI GCATC 2 cut(s) 64, 162
SfuI TTCGAA 1 cut(s) 489
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 2 cut(s) 43, 202
SseBI AGGCCT 1 cut(s) 95
SspMI CTAG 1 cut(s) 63
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 3 cut(s) 51, 252, 496
TaqI TCGA 3 cut(s) 105, 156, 489
TasI AATT 2 cut(s) 43, 202
TatI WGTACW 3 cut(s) 228, 279, 462
Tru1I TTAA 2 cut(s) 147, 318
Tru9I TTAA 2 cut(s) 147, 318
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.