Rh2DG180400

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000265
Physical Location & Seq
Reverse (-)
15906129 .. 15906682
554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG180400.1

Sequence Viewer

Length: 294 bp
ATGGTTGACTTTCATGTCTCCACTCTCTTCCAGTCCCTCCATGTCAAGGACAATTACCTACGAATTCAGGATGACACACTGAGCGGAGATGAATCATCAGTGGATATTGCAACCGAGAAGAATCTGAAAAGCCTTGTGGAGATCGGAAATGTGTTGCTGAAGAAGCCAGTGTCAAGGGTAAATCTCGATACTGGGAGGTACGAGGAATCTGAGGGAGACGGTACCTACGAAGAAGCACTGGTCGATTTTGCCAAACGGCTCGCGGAGGGAAAGAAGCTCGGGCAAAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

97

Amino Acids

10.86

Weight (kDa)

4.95

Isoelectric Point (pI)

25.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
Acc65I GGTACC 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 221
AccBSI CCGCTC 1 cut(s) 84
AccII CGCG 1 cut(s) 263
AciI CCGC 2 cut(s) 84, 263
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 2 cut(s) 200, 223
AfiI CCNNNNNNNGG 1 cut(s) 46
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw26I GTCTC 2 cut(s) 22, 210
Ama87I CYCGRG 1 cut(s) 278
ApoI RAATTY 1 cut(s) 63
Asp718I GGTACC 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 278
BanI GGYRCC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 22, 210
BmeT110I CYCGRG 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 223
BmrI ACTGGG 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 4 cut(s) 31, 167, 196, 243
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 71, 201
BseNI ACTGG 4 cut(s) 31, 167, 196, 243
Bsh1236I CGCG 1 cut(s) 263
BshNI GGYRCC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 278
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 2 cut(s) 22, 210
BsmBI CGTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 278
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 2 cut(s) 84, 263
BspCNI CTCAG 2 cut(s) 72, 202
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 221
BsrBI CCGCTC 1 cut(s) 84
BsrI ACTGG 4 cut(s) 31, 167, 196, 243
BssMI GATC 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 2 cut(s) 80, 210
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 263
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 2 cut(s) 22, 210
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstUI CGCG 1 cut(s) 263
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 4 cut(s) 77, 105, 174, 236
Cac8I GCNNGC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 199, 222
CviAII CATG 2 cut(s) 14, 41
CviJI RGCY 4 cut(s) 132, 166, 259, 277
CviKI_1 RGCY 4 cut(s) 132, 166, 259, 277
CviQI GTAC 2 cut(s) 199, 222
DdeI CTNAG 2 cut(s) 80, 210
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 210
FaeI CATG 2 cut(s) 17, 44
FaiI YATR 2 cut(s) 15, 42
FaqI GGGAC 1 cut(s) 19
FatI CATG 2 cut(s) 13, 40
FokI GGATG 1 cut(s) 83
Hin1II CATG 2 cut(s) 17, 44
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 3 cut(s) 92, 121, 206
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 3 cut(s) 126, 146, 211
Hpy188III TCNNGA 2 cut(s) 68, 185
Hpy8I GTNNAC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 2 cut(s) 80, 210
Hsp92II CATG 2 cut(s) 17, 44
KpnI GGTACC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 141
LpnPI CCDG 5 cut(s) 44, 53, 177, 180, 224
MalI GATC 1 cut(s) 143
MbiI CCGCTC 1 cut(s) 84
MboI GATC 1 cut(s) 141
MboII GAAGA 4 cut(s) 19, 130, 172, 242
MluCI AATT 3 cut(s) 52, 63, 289
MnlI CCTC 5 cut(s) 47, 189, 196, 205, 259
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 1 cut(s) 141
NlaIII CATG 2 cut(s) 17, 44
NlaIV GGNNCC 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 3 cut(s) 92, 121, 206
PspN4I GGNNCC 1 cut(s) 223
RsaI GTAC 2 cut(s) 200, 223
RsaNI GTAC 2 cut(s) 199, 222
Sau3AI GATC 1 cut(s) 141
SetI ASST 4 cut(s) 60, 200, 227, 279
Sse9I AATT 3 cut(s) 52, 63, 289
SsiI CCGC 2 cut(s) 84, 263
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 186, 243
TasI AATT 3 cut(s) 52, 63, 289
TfiI GAWTC 3 cut(s) 92, 121, 206
TscAI CASTG 4 cut(s) 84, 105, 174, 243
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 4 cut(s) 84, 105, 174, 243
XapI RAATTY 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.