MD15G1085600.v1.1

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000265
Physical Location & Seq
Reverse (-)
5910677 .. 5912328
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1085600.v1.1.491

Sequence Viewer

Length: 510 bp
ATGGCGGTGTGGCTGCGAATAATCCGTTTCAAATACCGTGCGCATTCTGCAGCCAAGTGGGGTTTATTAGATTGGTTAACCAGCGGTGGTGGAACCCCAATAATTGATGTTTTCAGTCAATCAAGTTCTGATATGGTCGATTATCATCTTTCTGTAGTTTTCCAAGCCCTTCGTTCGGAGAACAATTACCTTCGAATTCAGGATGACACGTTAACTGGACAAGTATCTTCTGTGGACATAGCCGTTAAGAAGAATTTGGATGATCTTCTCAAAGTGGGTGAAGGCCTGTTGAAAATACCAGTTTCTAGGGTTAATTTGGAGACTGGCAGGGTGGAGCCTTCAAAACACGAGTCCAATGAAGAGGCTCTCACTAGTTTGCAAAACTATTATCTGAAGAGAAGTGGCTTCGCCTTGCAAAGTCGTCTGTTGGACATGCTGCAAAGCCATATATCACCCTTTGAGTCTATGACCAAACTAGCCAAGATTCTTTCGTTTTTGTTTTTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

170

Amino Acids

19.07

Weight (kDa)

7.97

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 42
AciI CCGC 2 cut(s) 5, 84
AcsI RAATTY 2 cut(s) 195, 253
AcuI CTGAAG 1 cut(s) 413
AfiI CCNNNNNNNGG 1 cut(s) 175
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 3 cut(s) 31, 292, 342
AhlI ACTAGT 1 cut(s) 371
Alw26I GTCTC 1 cut(s) 314
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 3 cut(s) 13, 50, 436
ApoI RAATTY 2 cut(s) 195, 253
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AspLEI GCGC 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 290, 444
AsuII TTCGAA 1 cut(s) 193
BauI CACGAG 1 cut(s) 347
BbvI GCAGC 2 cut(s) 62, 423
BceAI ACGGC 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 314
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 3 cut(s) 306, 372, 476
BfmI CTRYAG 2 cut(s) 48, 153
BisI GCNGC 3 cut(s) 14, 51, 437
BlsI GCNGC 3 cut(s) 15, 52, 438
BmiI GGNNCC 2 cut(s) 94, 336
Bpu14I TTCGAA 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 3 cut(s) 220, 299, 328
Bse8I GATNNNNATC 1 cut(s) 144
BseGI GGATG 2 cut(s) 208, 265
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 175
BseNI ACTGG 3 cut(s) 220, 299, 328
BseXI GCAGC 2 cut(s) 62, 423
BshFI GGCC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 43
BsnI GGCC 1 cut(s) 285
Bsp119I TTCGAA 1 cut(s) 193
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 2 cut(s) 5, 84
BspANI GGCC 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 94, 336
BspMAI CTGCAG 1 cut(s) 52
BspT104I TTCGAA 1 cut(s) 193
BsrI ACTGG 3 cut(s) 220, 299, 328
BssMI GATC 1 cut(s) 262
BssSI CACGAG 1 cut(s) 347
Bst2BI CACGAG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 2 cut(s) 354, 389
BstBI TTCGAA 1 cut(s) 193
BstF5I GGATG 2 cut(s) 208, 265
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 436
BstSFI CTRYAG 2 cut(s) 48, 153
BstV1I GCAGC 2 cut(s) 62, 423
BsuRI GGCC 1 cut(s) 285
BtsCI GGATG 2 cut(s) 208, 265
CfoI GCGC 1 cut(s) 43
CviAII CATG 1 cut(s) 433
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 354, 389
EarI CTCTTC 2 cut(s) 354, 389
Eco147I AGGCCT 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 195
FaeI CATG 1 cut(s) 436
FaiI YATR 6 cut(s) 134, 239, 434, 447, 449, 467
FatI CATG 1 cut(s) 432
Fnu4HI GCNGC 3 cut(s) 14, 51, 437
FokI GGATG 2 cut(s) 215, 272
Fsp4HI GCNGC 3 cut(s) 14, 51, 437
FspAI RTGCGCAY 1 cut(s) 42
FspBI CTAG 3 cut(s) 306, 372, 476
FspI TGCGCA 1 cut(s) 42
GlaI GCGC 1 cut(s) 42
GluI GCNGC 3 cut(s) 14, 51, 437
HaeIII GGCC 1 cut(s) 285
HhaI GCGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 436
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 2 cut(s) 78, 213
HindII GTYRAC 2 cut(s) 78, 213
HinfI GANTC 3 cut(s) 350, 461, 484
HpaI GTTAAC 2 cut(s) 78, 213
HphI GGTGA 2 cut(s) 290, 444
Hpy166II GTNNAC 3 cut(s) 78, 213, 235
Hpy188I TCNGA 3 cut(s) 130, 178, 393
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 3 cut(s) 78, 213, 235
HpyAV CCTTC 4 cut(s) 179, 200, 275, 348
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 4 cut(s) 50, 379, 415, 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 1 cut(s) 436
HspAI GCGC 1 cut(s) 41
KspAI GTTAAC 2 cut(s) 78, 213
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 7 cut(s) 94, 185, 201, 299, 309, 312, 313
Lsp1109I GCAGC 2 cut(s) 62, 423
MaeI CTAG 3 cut(s) 306, 372, 476
MaeII ACGT 1 cut(s) 209
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 5 cut(s) 219, 257, 262, 371, 406
MluCI AATT 5 cut(s) 102, 184, 195, 253, 313
MlyI GAGTC 2 cut(s) 359, 470
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 1 cut(s) 355
MseI TTAA 4 cut(s) 77, 212, 246, 312
MspA1I CMGCKG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 1 cut(s) 262
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 2 cut(s) 94, 336
NsbI TGCGCA 1 cut(s) 42
NspI RCATGY 1 cut(s) 436
NspV TTCGAA 1 cut(s) 193
PceI AGGCCT 1 cut(s) 285
PctI GAATGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 484
PkrI GCNGC 3 cut(s) 15, 52, 438
PleI GAGTC 2 cut(s) 358, 469
PpsI GAGTC 2 cut(s) 358, 469
PspN4I GGNNCC 2 cut(s) 94, 336
PstI CTGCAG 1 cut(s) 52
SaqAI TTAA 4 cut(s) 77, 212, 246, 312
SatI GCNGC 3 cut(s) 14, 51, 437
Sau3AI GATC 1 cut(s) 262
SchI GAGTC 2 cut(s) 359, 470
SetI ASST 2 cut(s) 192, 212
SfcI CTRYAG 2 cut(s) 48, 153
SfuI TTCGAA 1 cut(s) 193
SpeI ACTAGT 1 cut(s) 371
Sse9I AATT 5 cut(s) 102, 184, 195, 253, 313
SseBI AGGCCT 1 cut(s) 285
SsiI CCGC 2 cut(s) 5, 84
SspMI CTAG 3 cut(s) 306, 372, 476
StuI AGGCCT 1 cut(s) 285
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 1 cut(s) 212
TaqI TCGA 2 cut(s) 138, 193
TasI AATT 5 cut(s) 102, 184, 195, 253, 313
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 4 cut(s) 77, 212, 246, 312
Tru9I TTAA 4 cut(s) 77, 212, 246, 312
TseI GCWGC 3 cut(s) 13, 50, 436
TspDTI ATGAA 1 cut(s) 372
TspGWI ACGGA 1 cut(s) 14
XapI RAATTY 2 cut(s) 195, 253
XceI RCATGY 1 cut(s) 436
XspI CTAG 3 cut(s) 306, 372, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.