Rh2AG174100

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000265
Physical Location & Seq
Reverse (-)
16590588 .. 16591989
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG174100.1

Sequence Viewer

Length: 378 bp
ATGAAGCGGGGGCCAAAATACGATGGGATGTATCTGCGCTCATTGATAAACGGGCTCCTTGGTGATCTCACTCTCAAGCAGACTTTAACCAATGTGGTCATTCCAAGTTTTGATATCAAACACCTTCAGCCTGTGGTTTTCTCAACCATCGATGATGACACACTGAGCGGAGATGAATCATCAGTGGATATTGCAACCGAGAAGAATCTGAAAAGCCTTGTGGAGATCGGAAATGTGTTGCTGAAGAAGCCAGTGTCAAGGGTAAATCTCGATACTGGGAGGTACGAGGAATCTGAGGGAGACGGTACCTACGAAGAAGCACTGGTCGATTTTGCCAAACGGCTCGCGGAGGGAAAGAAGCTCGGGCAAAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

125

Amino Acids

13.81

Weight (kDa)

5.19

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 305
AccBSI CCGCTC 1 cut(s) 168
AccII CGCG 1 cut(s) 347
AciI CCGC 3 cut(s) 7, 168, 347
AcuI CTGAAG 2 cut(s) 110, 263
AfaI GTAC 2 cut(s) 284, 307
AluBI AGCT 1 cut(s) 361
AluI AGCT 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 294
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 1 cut(s) 11
Asp718I GGTACC 1 cut(s) 305
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 362
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 57
BccI CCATC 2 cut(s) 17, 155
BceAI ACGGC 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 3 cut(s) 12, 56, 307
BmrI ACTGGG 1 cut(s) 285
BmuI ACTGGG 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 59
Bsa29I ATCGAT 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 58
Bse1I ACTGG 3 cut(s) 251, 280, 327
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 33
BseMII CTCAG 2 cut(s) 155, 285
BseNI ACTGG 3 cut(s) 251, 280, 327
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 1 cut(s) 13
BshNI GGYRCC 1 cut(s) 305
BshVI ATCGAT 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 294
BsmBI CGTCTC 1 cut(s) 294
BsnI GGCC 1 cut(s) 13
BsoBI CYCGRG 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 64, 225
BspACI CCGC 3 cut(s) 7, 168, 347
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 2 cut(s) 156, 286
BspDI ATCGAT 1 cut(s) 150
BspFNI CGCG 1 cut(s) 347
BspLI GGNNCC 3 cut(s) 12, 56, 307
BspT107I GGYRCC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 168
BsrI ACTGG 3 cut(s) 251, 280, 327
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 64, 225
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 164, 294
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 347
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 2 cut(s) 67, 228
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 2 cut(s) 64, 225
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstUI CGCG 1 cut(s) 347
Bsu15I ATCGAT 1 cut(s) 150
BsuRI GGCC 1 cut(s) 13
BsuTUI ATCGAT 1 cut(s) 150
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 4 cut(s) 161, 189, 258, 320
Cac8I GCNNGC 1 cut(s) 345
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 11
ClaI ATCGAT 1 cut(s) 150
Csp6I GTAC 2 cut(s) 283, 306
CviJI RGCY 7 cut(s) 13, 55, 130, 216, 250, 343, 361
CviKI_1 RGCY 7 cut(s) 13, 55, 130, 216, 250, 343, 361
CviQI GTAC 2 cut(s) 283, 306
DdeI CTNAG 2 cut(s) 164, 294
DpnI GATC 2 cut(s) 66, 227
DpnII GATC 2 cut(s) 64, 225
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 57
Eco32I GATATC 1 cut(s) 115
Eco57I CTGAAG 2 cut(s) 110, 263
Eco88I CYCGRG 1 cut(s) 362
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 58
Esp3I CGTCTC 1 cut(s) 294
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 57
GlaI GCGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 13
HhaI GCGC 1 cut(s) 39
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HinfI GANTC 3 cut(s) 176, 205, 290
HphI GGTGA 1 cut(s) 74
Hpy188I TCNGA 3 cut(s) 210, 230, 295
Hpy188III TCNNGA 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 2 cut(s) 164, 294
HspAI GCGC 1 cut(s) 37
KpnI GGTACC 1 cut(s) 309
Kzo9I GATC 2 cut(s) 64, 225
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 4 cut(s) 144, 261, 264, 308
MalI GATC 2 cut(s) 66, 227
MbiI CCGCTC 1 cut(s) 168
MboI GATC 2 cut(s) 64, 225
MboII GAAGA 3 cut(s) 214, 256, 326
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 1 cut(s) 373
MnlI CCTC 4 cut(s) 273, 280, 289, 343
MseI TTAA 1 cut(s) 86
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 2 cut(s) 64, 225
NlaIV GGNNCC 3 cut(s) 12, 56, 307
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PfeI GAWTC 3 cut(s) 176, 205, 290
PspN4I GGNNCC 3 cut(s) 12, 56, 307
PspPI GGNCC 1 cut(s) 11
RsaI GTAC 2 cut(s) 284, 307
RsaNI GTAC 2 cut(s) 283, 306
SaqAI TTAA 1 cut(s) 86
Sau3AI GATC 2 cut(s) 64, 225
Sau96I GGNCC 1 cut(s) 11
SduI GDGCHC 1 cut(s) 57
SetI ASST 4 cut(s) 126, 284, 311, 363
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 1 cut(s) 373
SsiI CCGC 3 cut(s) 7, 168, 347
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 3 cut(s) 150, 270, 327
TasI AATT 1 cut(s) 373
TfiI GAWTC 3 cut(s) 176, 205, 290
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 4 cut(s) 168, 189, 258, 327
TspDTI ATGAA 2 cut(s) 17, 189
TspRI CASTG 4 cut(s) 168, 189, 258, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.