Rh2CG179200

Lipolytic acyl hydrolase (LAH)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
16434955 .. 16436846
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG179200.1

Sequence Viewer

Length: 339 bp
ATGTCTACTGGTTTGGCAAAGAGAAAGATGGTGACAGTGTTAAGCATTGACGGAGGTGGTATTAGAGGCATCATCCCTGGCACTATCCTCGGCTTTCTCGAATCCAAGCTTCAGGATGATAATTTGATCGGTGAGGAGGCATCAGTGGACATTGCAACAGAGAAGAATCTGAAGAGGCTTGTCGAGATCGGAAATGCGCTGTTGAAGAAGCGATTGTCAAGGGTAAATCTCGATACTGGGAGGTACGAGGAATCTGAGGGAGAAGGTACCTACGAAGAAGCACTGGTCGATTTTGCCAAACGGCTCGCGGAGGGAAGGAAGCTCAGGCAAAAGAATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.32

Weight (kDa)

7.95

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 308
AciI CCGC 1 cut(s) 308
AcuI CTGAAG 2 cut(s) 95, 191
AfaI GTAC 2 cut(s) 245, 268
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 2 cut(s) 109, 322
AluI AGCT 2 cut(s) 109, 322
Asp718I GGTACC 1 cut(s) 266
AspLEI GCGC 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 43, 143
BanI GGYRCC 1 cut(s) 266
BccI CCATC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 317
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BciT130I CCWGG 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 78
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 78, 149
BmuI ACTGGG 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 76, 88
Bse1I ACTGG 3 cut(s) 13, 241, 288
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 76, 88
BseGI GGATG 2 cut(s) 72, 121
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 2 cut(s) 246, 337
BseNI ACTGG 3 cut(s) 13, 241, 288
BseRI GAGGAG 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 266
Bsp143I GATC 2 cut(s) 126, 186
BspACI CCGC 1 cut(s) 308
BspCNI CTCAG 2 cut(s) 247, 336
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 3 cut(s) 13, 241, 288
BssECI CCNNGG 2 cut(s) 76, 88
BssMI GATC 2 cut(s) 126, 186
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 255, 323
BstF5I GGATG 2 cut(s) 72, 121
BstFNI CGCG 1 cut(s) 308
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 2 cut(s) 129, 189
BstMBI GATC 2 cut(s) 126, 186
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstUI CGCG 1 cut(s) 308
BtsCI GGATG 2 cut(s) 72, 121
BtsIMutI CAGTG 3 cut(s) 42, 150, 281
Cac8I GCNNGC 1 cut(s) 306
CfoI GCGC 1 cut(s) 199
Csp6I GTAC 2 cut(s) 244, 267
CviJI RGCY 5 cut(s) 93, 109, 178, 304, 322
CviKI_1 RGCY 5 cut(s) 93, 109, 178, 304, 322
CviQI GTAC 2 cut(s) 244, 267
DdeI CTNAG 2 cut(s) 255, 323
DpnI GATC 2 cut(s) 128, 188
DpnII GATC 2 cut(s) 126, 186
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco57I CTGAAG 2 cut(s) 95, 191
EcoRII CCWGG 1 cut(s) 76
FblI GTMKAC 1 cut(s) 5
FokI GGATG 2 cut(s) 59, 128
GlaI GCGC 1 cut(s) 198
HhaI GCGC 1 cut(s) 199
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 3 cut(s) 101, 166, 251
HphI GGTGA 2 cut(s) 43, 143
Hpy166II GTNNAC 2 cut(s) 6, 148
Hpy188I TCNGA 3 cut(s) 171, 191, 256
Hpy188III TCNNGA 4 cut(s) 98, 113, 184, 230
Hpy8I GTNNAC 2 cut(s) 6, 148
HpyAV CCTTC 2 cut(s) 257, 309
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 155
HpyF3I CTNAG 2 cut(s) 255, 323
HspAI GCGC 1 cut(s) 197
KpnI GGTACC 1 cut(s) 270
Kzo9I GATC 2 cut(s) 126, 186
LpnPI CCDG 6 cut(s) 63, 90, 98, 222, 269, 310
LweI GCATC 2 cut(s) 78, 149
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 128, 188
MboI GATC 2 cut(s) 126, 186
MboII GAAGA 4 cut(s) 175, 184, 217, 287
MluCI AATT 2 cut(s) 121, 334
MseI TTAA 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 308
NdeII GATC 2 cut(s) 126, 186
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 3 cut(s) 101, 166, 251
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 268
RsaI GTAC 2 cut(s) 245, 268
RsaNI GTAC 2 cut(s) 244, 267
SaqAI TTAA 1 cut(s) 41
Sau3AI GATC 2 cut(s) 126, 186
ScrFI CCNGG 1 cut(s) 78
SetI ASST 6 cut(s) 58, 111, 245, 268, 272, 324
SfaNI GCATC 2 cut(s) 78, 149
Sse9I AATT 2 cut(s) 121, 334
SsiI CCGC 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 4 cut(s) 99, 183, 231, 288
TasI AATT 2 cut(s) 121, 334
TfiI GAWTC 3 cut(s) 101, 166, 251
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 3 cut(s) 42, 150, 288
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 3 cut(s) 42, 150, 288
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.