Rorug06G0358000

Lipolytic acyl hydrolase (LAH)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
50708240 .. 50708485
246 bp
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UTR
Exon/CDS
Intron
Rorug06G0358000.1

Sequence Viewer

Length: 246 bp
ATGACGATGATGGCGAACTTGAATTCGAAATTAGGGTTGTTCCGATTAGGGACACGGTGGCTGAGCAGTACTGGGAGTGGGCCAGGGAAGAGGGTCGCGGCGGTTTGGGGCAATGGAGACTACGGGAGGCTCGGATTAGGGAGCTTGGACTCTCAGTGGAGCCCTACCCCTCTGCTCTGCTCTGCATTTCAGGACCAAAGCCTTGAAGCCGTTGCTTGCGGCGGAGCTCACACTCTGTTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

8.53

Weight (kDa)

8.84

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 34 - 81 3.5e-07 RCC1-like domain
RCC1 PF00415 36 - 81 1.1e-10 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 98
AciI CCGC 4 cut(s) 98, 101, 219, 222
AcsI RAATTY 1 cut(s) 22
AfaI GTAC 1 cut(s) 70
AgsI TTSAA 2 cut(s) 22, 206
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 2 cut(s) 144, 227
AluI AGCT 2 cut(s) 144, 227
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 111
AoxI GGCC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 2 cut(s) 80, 193
AsuII TTCGAA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 193
BanII GRGCYC 2 cut(s) 164, 229
Bbv12I GWGCWC 1 cut(s) 229
BccI CCATC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 111
BisI GCNGC 2 cut(s) 99, 220
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 2 cut(s) 100, 221
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 80, 193
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 84
BmrI ACTGGG 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 62
Bpu14I TTCGAA 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 2 cut(s) 53, 167
BseNI ACTGG 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 229
BslFI GGGAC 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 1 cut(s) 82
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 164, 229
Bsp1720I GCTNAGC 1 cut(s) 62
BspACI CCGC 4 cut(s) 98, 101, 219, 222
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 2 cut(s) 54, 166
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 161
BspT104I TTCGAA 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 118
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 83
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 62, 153
BstFNI CGCG 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 111
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BstUI CGCG 1 cut(s) 98
BsuRI GGCC 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 80, 193
Csp6I GTAC 1 cut(s) 69
CviJI RGCY 8 cut(s) 61, 82, 130, 144, 162, 201, 209, 227
CviKI_1 RGCY 8 cut(s) 61, 82, 130, 144, 162, 201, 209, 227
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 2 cut(s) 62, 153
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
EciI GGCGGA 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 227
Eco24I GRGCYC 2 cut(s) 164, 229
Eco47I GGWCC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 82
EcoT38I GRGCYC 2 cut(s) 164, 229
FaiI YATR 1 cut(s) 244
FaqI GGGAC 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 99, 220
FriOI GRGCYC 2 cut(s) 164, 229
Fsp4HI GCNGC 2 cut(s) 99, 220
GluI GCNGC 2 cut(s) 99, 220
HaeIII GGCC 1 cut(s) 82
HinfI GANTC 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 44, 134
Hpy188III TCNNGA 1 cut(s) 191
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 62, 153
LmnI GCTCC 3 cut(s) 141, 159, 224
LpnPI CCDG 4 cut(s) 57, 69, 96, 176
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 2 cut(s) 164, 229
MluCI AATT 2 cut(s) 22, 29
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 3 cut(s) 84, 120, 180
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 161
NspV TTCGAA 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PkrI GCNGC 2 cut(s) 100, 221
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 2 cut(s) 80, 193
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SacI GAGCTC 1 cut(s) 229
SatI GCNGC 2 cut(s) 99, 220
Sau96I GGNCC 2 cut(s) 80, 193
ScaI AGTACT 1 cut(s) 70
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 2 cut(s) 164, 229
SetI ASST 2 cut(s) 146, 229
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 1 cut(s) 193
Sse9I AATT 2 cut(s) 22, 29
SsiI CCGC 4 cut(s) 98, 101, 219, 222
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 26
TasI AATT 2 cut(s) 22, 29
TatI WGTACW 1 cut(s) 68
TauI GCSGC 2 cut(s) 101, 222
TscAI CASTG 1 cut(s) 161
TspRI CASTG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 1 cut(s) 22
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.