Rh6CG483800

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000265
Physical Location & Seq
Forward (+)
65113733 .. 65115750
2018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG483800.1

Sequence Viewer

Length: 285 bp
ATGGATGACACGCTAACTGGGCAAGTATCTTCAGTGGATATAGCAGTAGAGAAGAATTTGAATGATCTTTTGAAAGTTGGTGAAGGCCTATTGAAAAAACCAGTCTCTAGAATTAATTTAGAGACCGGAAATTATGAGGCTTTTACCGAAGAGACTAATGCAGAGGCTCTTACAAGGTTTGCAAAACTACTGTCTGAAGAGAAGTGGCTTCGCCTTGCTAGGTCCCCCCAGGGACATGCTATACCTAAATCTAGTCATGATGGCTCTCTTAGTATTAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

94

Amino Acids

10.32

Weight (kDa)

5.64

Isoelectric Point (pI)

26.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 2 cut(s) 15, 216
AgsI TTSAA 3 cut(s) 61, 73, 94
AjnI CCWGG 1 cut(s) 228
Alw26I GTCTC 3 cut(s) 109, 116, 146
AoxI GGCC 1 cut(s) 85
ApoI RAATTY 1 cut(s) 55
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AseI ATTAAT 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 222
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 230
BcoDI GTCTC 3 cut(s) 109, 116, 146
BfaI CTAG 3 cut(s) 108, 219, 252
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 230
BmrI ACTGGG 1 cut(s) 27
BmuI ACTGGG 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 228, 229
BsaWI WCCGGW 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 22, 101
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 228, 229
BseGI GGATG 1 cut(s) 10
BseNI ACTGG 2 cut(s) 22, 101
BshFI GGCC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 2 cut(s) 208, 246
BsmAI GTCTC 3 cut(s) 109, 116, 146
BsmFI GGGAC 2 cut(s) 208, 246
BsnI GGCC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 64
BspANI GGCC 1 cut(s) 87
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 116
BsrI ACTGG 2 cut(s) 22, 101
BssECI CCNNGG 2 cut(s) 228, 229
BssMI GATC 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 2 cut(s) 144, 192
BstDEI CTNAG 1 cut(s) 269
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 3 cut(s) 109, 116, 146
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 39
CciI TCATGA 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 222
CviAII CATG 2 cut(s) 236, 257
CviJI RGCY 5 cut(s) 87, 140, 167, 208, 264
CviKI_1 RGCY 5 cut(s) 87, 140, 167, 208, 264
DdeI CTNAG 1 cut(s) 269
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 144, 192
EarI CTCTTC 2 cut(s) 144, 192
Eco147I AGGCCT 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 222
Eco57I CTGAAG 2 cut(s) 15, 216
EcoO109I RGGNCCY 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 228
FaeI CATG 2 cut(s) 239, 260
FaiI YATR 6 cut(s) 41, 135, 237, 242, 258, 283
FaqI GGGAC 2 cut(s) 208, 246
FatI CATG 2 cut(s) 235, 256
FokI GGATG 1 cut(s) 17
FspBI CTAG 3 cut(s) 108, 219, 252
HaeIII GGCC 1 cut(s) 87
HapII CCGG 1 cut(s) 126
Hin1II CATG 2 cut(s) 239, 260
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 108, 257
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 161, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 269
Hsp92II CATG 2 cut(s) 239, 260
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 5 cut(s) 3, 114, 139, 215, 242
MaeI CTAG 3 cut(s) 108, 219, 252
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 4 cut(s) 21, 64, 161, 209
MluCI AATT 4 cut(s) 55, 111, 115, 130
MnlI CCTC 2 cut(s) 130, 157
MseI TTAA 2 cut(s) 114, 276
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 19
NdeII GATC 1 cut(s) 64
NlaIII CATG 2 cut(s) 239, 260
NlaIV GGNNCC 1 cut(s) 224
NspI RCATGY 1 cut(s) 239
PagI TCATGA 1 cut(s) 256
PasI CCCWGGG 1 cut(s) 229
PceI AGGCCT 1 cut(s) 87
PpuMI RGGWCCY 1 cut(s) 222
PshBI ATTAAT 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 1 cut(s) 222
PspPPI RGGWCCY 1 cut(s) 222
SaqAI TTAA 2 cut(s) 114, 276
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 230
SetI ASST 3 cut(s) 179, 224, 247
SinI GGWCC 1 cut(s) 222
Sse9I AATT 4 cut(s) 55, 111, 115, 130
SseBI AGGCCT 1 cut(s) 87
SspMI CTAG 3 cut(s) 108, 219, 252
StuI AGGCCT 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 192
TasI AATT 4 cut(s) 55, 111, 115, 130
Tru1I TTAA 2 cut(s) 114, 276
Tru9I TTAA 2 cut(s) 114, 276
TscAI CASTG 1 cut(s) 39
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 222
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 1 cut(s) 55
XbaI TCTAGA 1 cut(s) 107
XceI RCATGY 1 cut(s) 239
XspI CTAG 3 cut(s) 108, 219, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.