Rh5DG283300

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000265
Physical Location & Seq
Reverse (-)
34821665 .. 34841412
19748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG283300.1

Sequence Viewer

Length: 375 bp
ATGATGTTCTGGCCAGTTCAAAAGAACTTCTTGACATCGATTCAAAGTGTCGTTGGTGCCGTGATGGGCCCAAAATACGATGGGAAGTACCTGCGCACAATGACGAACAAGCTGCTCGGTGATCTTACTCTCAAGCAAACTCTAACCAATGATGACAGTTTGATCGGTGAGGAGTCATCGGTGGATATTGCAACGGAGAAAAATCTGAAGAGGCTTGTGGAGATCGGGAATGGGCTGCTGAAAAAGCCGGTGTCAAGGGTAAATTTGGATAACGGGAGGTATGAGAAATTTGAAGGAGAAGGTACCTATGAACAAGCACTGGTCGATTTTGCCAAACGGCTCGTGGAGGGGAAGAAGCACAGGCAATACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0044424 GO:0044464 GO:0047372 GO:0052689
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

124

Amino Acids

14.09

Weight (kDa)

9.27

Isoelectric Point (pI)

23.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 99
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 2 cut(s) 56, 302
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 2 cut(s) 262, 287
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 2 cut(s) 89, 304
AgsI TTSAA 3 cut(s) 20, 44, 293
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AoxI GGCC 2 cut(s) 11, 67
ApaI GGGCCC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 112, 235
ApoI RAATTY 2 cut(s) 262, 287
Asp718I GGTACC 1 cut(s) 302
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 67, 68
AsuHPI GGTGA 2 cut(s) 131, 179
BaeGI GKGCMC 1 cut(s) 71
BalI TGGCCA 1 cut(s) 13
BanI GGYRCC 2 cut(s) 56, 302
BanII GRGCYC 1 cut(s) 71
BauI CACGAG 1 cut(s) 341
BbvI GCAGC 2 cut(s) 99, 222
BccI CCATC 2 cut(s) 58, 74
BceAI ACGGC 2 cut(s) 44, 353
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BfuAI ACCTGC 1 cut(s) 99
BisI GCNGC 2 cut(s) 113, 236
BlsI GCNGC 2 cut(s) 114, 237
BmgT120I GGNCC 2 cut(s) 67, 68
BmiI GGNNCC 3 cut(s) 58, 69, 304
BpuEI CTTGAG 1 cut(s) 116
Bsa29I ATCGAT 1 cut(s) 38
Bse118I RCCGGY 1 cut(s) 247
Bse1I ACTGG 2 cut(s) 14, 324
BseCI ATCGAT 1 cut(s) 38
BseNI ACTGG 2 cut(s) 14, 324
BseRI GAGGAG 1 cut(s) 185
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 2 cut(s) 99, 222
BshFI GGCC 2 cut(s) 13, 69
BshNI GGYRCC 2 cut(s) 56, 302
BshVI ATCGAT 1 cut(s) 38
BsiSI CCGG 1 cut(s) 248
BsnI GGCC 2 cut(s) 13, 69
Bsp120I GGGCCC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 3 cut(s) 121, 162, 222
BspANI GGCC 2 cut(s) 13, 69
BspDI ATCGAT 1 cut(s) 38
BspLI GGNNCC 3 cut(s) 58, 69, 304
BspMI ACCTGC 1 cut(s) 99
BspT107I GGYRCC 2 cut(s) 56, 302
BsrFI RCCGGY 1 cut(s) 247
BsrI ACTGG 2 cut(s) 14, 324
BssAI RCCGGY 1 cut(s) 247
BssMI GATC 3 cut(s) 121, 162, 222
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 203
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 3 cut(s) 124, 165, 225
BstMBI GATC 3 cut(s) 121, 162, 222
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 99, 222
Bsu15I ATCGAT 1 cut(s) 38
BsuRI GGCC 2 cut(s) 13, 69
BsuTUI ATCGAT 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 317
BveI ACCTGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 67, 68
ClaI ATCGAT 1 cut(s) 38
Csp6I GTAC 2 cut(s) 88, 303
CviJI RGCY 7 cut(s) 13, 69, 112, 214, 235, 247, 340
CviKI_1 RGCY 7 cut(s) 13, 69, 112, 214, 235, 247, 340
CviQI GTAC 2 cut(s) 88, 303
DpnI GATC 3 cut(s) 123, 164, 224
DpnII GATC 3 cut(s) 121, 162, 222
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 71
FaiI YATR 2 cut(s) 282, 309
FalI AAGNNNNNCTT 2 cut(s) 14, 46
Fnu4HI GCNGC 2 cut(s) 113, 236
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 113, 236
FspI TGCGCA 1 cut(s) 95
GlaI GCGC 1 cut(s) 95
GluI GCNGC 2 cut(s) 113, 236
HaeIII GGCC 2 cut(s) 13, 69
HapII CCGG 1 cut(s) 248
HhaI GCGC 1 cut(s) 96
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 2 cut(s) 40, 173
HpaII CCGG 1 cut(s) 248
HphI GGTGA 2 cut(s) 131, 179
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 2 cut(s) 31, 226
HpyAV CCTTC 2 cut(s) 287, 293
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HspAI GCGC 1 cut(s) 94
KpnI GGTACC 1 cut(s) 306
Kzo9I GATC 3 cut(s) 121, 162, 222
LpnPI CCDG 5 cut(s) 27, 104, 261, 305, 346
Lsp1109I GCAGC 2 cut(s) 99, 222
MalI GATC 3 cut(s) 123, 164, 224
MboI GATC 3 cut(s) 121, 162, 222
MboII GAAGA 2 cut(s) 220, 364
MhlI GDGCHC 1 cut(s) 71
MlsI TGGCCA 1 cut(s) 13
MluCI AATT 2 cut(s) 262, 287
MluNI TGGCCA 1 cut(s) 13
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 4 cut(s) 163, 204, 270, 340
Mox20I TGGCCA 1 cut(s) 13
MscI TGGCCA 1 cut(s) 13
Msp20I TGGCCA 1 cut(s) 13
MspI CCGG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 244
NdeII GATC 3 cut(s) 121, 162, 222
NlaIV GGNNCC 3 cut(s) 58, 69, 304
NsbI TGCGCA 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 114, 237
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PspN4I GGNNCC 3 cut(s) 58, 69, 304
PspOMI GGGCCC 1 cut(s) 67
PspPI GGNCC 2 cut(s) 67, 68
RsaI GTAC 2 cut(s) 89, 304
RsaNI GTAC 2 cut(s) 88, 303
SatI GCNGC 2 cut(s) 113, 236
Sau3AI GATC 3 cut(s) 121, 162, 222
Sau96I GGNCC 2 cut(s) 67, 68
SchI GAGTC 1 cut(s) 182
SduI GDGCHC 1 cut(s) 71
SetI ASST 5 cut(s) 93, 114, 281, 304, 308
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 2 cut(s) 262, 287
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 38, 324
TasI AATT 2 cut(s) 262, 287
TfiI GAWTC 1 cut(s) 40
TscAI CASTG 1 cut(s) 324
TseI GCWGC 2 cut(s) 112, 235
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 1 cut(s) 324
XapI RAATTY 2 cut(s) 262, 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.