Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008219

Physical Location & Seq

Genomic Coordinates Reverse (-)

18288651 .. 18294057

Gene Structure 5407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23629

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCAGGTATGGAGAGGCTGCAGAGAATGTTCGCCGGTGCCGGAGGAGCTTTGGGCCACCCGCCGCCCGACTCCCCCACTCTCGATTCCTCCGAGCAGGTCTACATCTCCTCCTTGGCGCTCCTCAAAATGCTCAAGCACGGAAGAGCTGGGGTTCCAATGGAGGTCATGGGATTGATGCTGGGAGAGTTTGTGGATGAATACACTGTTCGTGTTGTTGACGTCTTTGCGATGCCGCAGAGTGGTACTGGTGTCAGTGTCGAAGCCGTCGATCATGTCTTTCAGACTAATATGCTTGATATGCTTAAGCAGACCGGACGACCAGAGATGGTAGTTGGGTGGTACCATTCGCATCCTGGATTTGGATGTTGGCTATCTGGTGTGGACATTAATACCCAGCAGAGCTTTGAAGCTTTGAATCAACGGGCTGTAGCTGTAGTGGTGGATCCAATTCAGAGCGTGAAGGGGAAGGTAGTCATTGATGCATTCCGCCTTATCAACCCACAAACTATGATGCTTGGCCAAGAACCACGGCAGACCACATCCAATCTCGGGCATCTAAATAAGCCATCAATTCAAGCCTTGATCCATGGGTTAAATCGTCACTATTACTCCATAGCAATTAATTACCGGAAGAATGAACTCGAGGAGAAAATGTTGCTTAACCTTCACAAGAAGAAATGGACAGATGGGCTGACACTACAGCAATTTGACACTCATTCAAAAACAAATGAGCAAACAGTTCAGGAGATGTTAAATCTAGCTGTTAAATACAACAAGGCAGTGCAGGAGGAGGATGAGCTGCCACCAGAGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCTAAGAAGCACCTCGAAGAGCATGTCTCCAACTTAATGTCCTCAAACATTGTCCAGACGTTGGGCACAATGCTTGATACTGTGGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

312

Amino Acids

34.78

Weight (kDa)

6.06

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	30 - 141	9e-35	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB	PF14464	41 - 131	1.6e-06	Prokaryotic homologs of the JAB domain
RPN11_C	PF23594	231 - 310	7.5e-35	26S proteasome regulatory subunit RPN11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23540 AT5G23540
fragaria_vesca	FvH4_2g34740 FvH4_2g34740 FvH4_2g34740
malus_domestica	MD08G1104100.v1.1 MD15G1085300.v1.1
prunus_persica	Prupe.1G439400_v2.0.a1
pyrus_communis	pycom08g08550 pycom15g08050
rosa_chinensis	RchiOBHm_Chr6g0263451 RchiOBHm_Chr6g0307401
rosa_laevigata	RLG00000010717 RLG00000014338
rosa_multiflora	Rmu_sc0000031.1_g000014 Rmu_sc0005715.1_g000007
rosa_rugosa	Rorug06G0358400 Rorug06G0358500
rosa_samantha	Rh6BG430700 Rh6BG431500 Rh6CG484000 Rh6DG470800
rosa_wichuraiana	Rw6G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	88
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	2 cut(s)	38, 342
AccB7I	CCANNNNNTGG	1 cut(s)	907
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	4 cut(s)	62, 65, 236, 490
AclWI	GGATC	3 cut(s)	440, 453, 580
AcoI	YGGCCR	1 cut(s)	520
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	247, 344
AfiI	CCNNNNNNNGG	4 cut(s)	242, 362, 552, 907
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	410, 418, 578, 723
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	8 cut(s)	50, 149, 405, 413, 434, 764, 802, 817
AluI	AGCT	8 cut(s)	50, 149, 405, 413, 434, 764, 802, 817
Alw26I	GTCTC	1 cut(s)	877
AlwI	GGATC	3 cut(s)	440, 453, 580
Ama87I	CYCGRG	2 cut(s)	551, 644
AoxI	GGCC	2 cut(s)	55, 520
ApeKI	GCWGC	2 cut(s)	19, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	855, 887
AseI	ATTAAT	2 cut(s)	390, 624
Asp718I	GGTACC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	55
AvaI	CYCGRG	2 cut(s)	551, 644
BaeGI	GKGCMC	1 cut(s)	914
BaeI	ACNNNNGTAYC	3 cut(s)	237, 270, 915
BalI	TGGCCA	1 cut(s)	522
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	2 cut(s)	38, 342
BbsI	GAAGAC	1 cut(s)	844
BbvI	GCAGC	2 cut(s)	6, 789
BccI	CCATC	3 cut(s)	322, 577, 683
BceAI	ACGGC	2 cut(s)	251, 548
BciT130I	CCWGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	877
BfaI	CTAG	2 cut(s)	761, 937
BfmI	CTRYAG	4 cut(s)	20, 429, 435, 701
BfoI	RGCGCY	1 cut(s)	122
BfrI	CTTAAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	4 cut(s)	20, 65, 236, 803
BlsI	GCNGC	4 cut(s)	21, 66, 237, 804
Bme1390I	CCNGG	1 cut(s)	357
BmeT110I	CYCGRG	2 cut(s)	551, 644
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	4 cut(s)	40, 156, 344, 447
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	7 cut(s)	168, 222, 361, 472, 504, 565, 835
BpiI	GAAGAC	1 cut(s)	844
BplI	GAGNNNNNCTC	2 cut(s)	857, 889
BpuEI	CTTGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	114, 530, 589
BsaWI	WCCGGW	2 cut(s)	314, 630
BsaXI	ACNNNNNCTCC	8 cut(s)	95, 125, 177, 207, 596, 626, 641, 671
Bsc4I	CCNNNNNNNGG	4 cut(s)	242, 362, 552, 907
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	114, 530, 589
BseGI	GGATG	5 cut(s)	202, 352, 371, 542, 802
BseLI	CCNNNNNNNGG	4 cut(s)	242, 362, 552, 907
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	5 cut(s)	60, 100, 113, 662, 806
BseSI	GKGCMC	1 cut(s)	914
BseXI	GCAGC	2 cut(s)	6, 789
BseYI	CCCAGC	3 cut(s)	149, 181, 396
BsgI	GTGCAG	1 cut(s)	806
BshFI	GGCC	2 cut(s)	57, 522
BshNI	GGYRCC	2 cut(s)	38, 342
BsiHKCI	CYCGRG	2 cut(s)	551, 644
BsiSI	CCGG	4 cut(s)	36, 42, 315, 631
BslI	CCNNNNNNNGG	4 cut(s)	242, 362, 552, 907
BsmAI	GTCTC	1 cut(s)	877
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	57, 522
BsoBI	CYCGRG	2 cut(s)	551, 644
Bsp1286I	GDGCHC	1 cut(s)	914
Bsp143I	GATC	3 cut(s)	271, 445, 585
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	4 cut(s)	62, 65, 236, 490
BspANI	GGCC	2 cut(s)	57, 522
BspLI	GGNNCC	4 cut(s)	40, 156, 344, 447
BspMAI	CTGCAG	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	440, 453, 580
BspQI	GCTCTTC	2 cut(s)	139, 858
BspT107I	GGYRCC	2 cut(s)	38, 342
BspTI	CTTAAG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	114, 530, 589
BssMI	GATC	3 cut(s)	271, 445, 585
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	2 cut(s)	114, 589
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	3 cut(s)	208, 742, 928
Bst6I	CTCTTC	2 cut(s)	139, 858
BstACI	GRCGYC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	819
BstDEI	CTNAG	1 cut(s)	849
BstDSI	CCRYGG	2 cut(s)	530, 589
BstF5I	GGATG	5 cut(s)	202, 352, 371, 542, 802
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	3 cut(s)	274, 448, 588
BstMAI	GTCTC	1 cut(s)	877
BstMBI	GATC	3 cut(s)	271, 445, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 301
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	872
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	4 cut(s)	20, 429, 435, 701
BstSLI	GKGCMC	1 cut(s)	914
BstV1I	GCAGC	2 cut(s)	6, 789
BstV2I	GAAGAC	1 cut(s)	844
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	57, 522
BtgI	CCRYGG	2 cut(s)	530, 589
BtgZI	GCGATG	1 cut(s)	245
BtsCI	GGATG	5 cut(s)	202, 352, 371, 542, 802
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	3 cut(s)	204, 262, 789
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	819
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	246, 343
CviAII	CATG	4 cut(s)	169, 275, 590, 869
CviQI	GTAC	2 cut(s)	246, 343
DdeI	CTNAG	1 cut(s)	849
DpnI	GATC	3 cut(s)	273, 447, 587
DpnII	GATC	3 cut(s)	271, 445, 585
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	2 cut(s)	139, 858
EarI	CTCTTC	2 cut(s)	139, 858
EciI	GGCGGA	1 cut(s)	479
Eco130I	CCWWGG	2 cut(s)	114, 589
Eco88I	CYCGRG	2 cut(s)	551, 644
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	114, 589
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	114, 589
FaeI	CATG	4 cut(s)	172, 278, 593, 872
FaiI	YATR	9 cut(s)	11, 170, 276, 293, 302, 512, 591, 617, 870
FatI	CATG	4 cut(s)	168, 274, 589, 868
FauI	CCCGC	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	20, 65, 236, 803
FokI	GGATG	5 cut(s)	209, 339, 378, 529, 809
Fsp4HI	GCNGC	4 cut(s)	20, 65, 236, 803
FspBI	CTAG	2 cut(s)	761, 937
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	20, 65, 236, 803
GsaI	CCCAGC	3 cut(s)	153, 185, 400
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	57, 522
HapII	CCGG	4 cut(s)	36, 42, 315, 631
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	172, 278, 593, 872
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	2 cut(s)	411, 815
HinfI	GANTC	3 cut(s)	71, 86, 418
HpaII	CCGG	4 cut(s)	36, 42, 315, 631
Hpy166II	GTNNAC	3 cut(s)	103, 220, 385
Hpy188I	TCNGA	3 cut(s)	94, 285, 456
Hpy188III	TCNNGA	3 cut(s)	83, 746, 901
Hpy8I	GTNNAC	3 cut(s)	103, 220, 385
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	457, 463, 677
HpyCH4III	ACNGT	3 cut(s)	208, 742, 928
HpyCH4IV	ACGT	2 cut(s)	222, 905
HpyCH4V	TGCA	5 cut(s)	22, 485, 787, 821, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 301
HpyF3I	CTNAG	1 cut(s)	849
HpySE526I	ACGT	2 cut(s)	222, 905
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	4 cut(s)	172, 278, 593, 872
HspAI	GCGC	1 cut(s)	119
KpnI	GGTACC	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	271, 445, 585
LguI	GCTCTTC	2 cut(s)	139, 858
LmnI	GCTCC	2 cut(s)	47, 126
Lsp1109I	GCAGC	2 cut(s)	6, 789
LweI	GCATC	7 cut(s)	168, 222, 361, 472, 504, 565, 835
MaeI	CTAG	2 cut(s)	761, 937
MaeII	ACGT	2 cut(s)	222, 905
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	3 cut(s)	273, 447, 587
MboI	GATC	3 cut(s)	271, 445, 585
MboII	GAAGA	5 cut(s)	156, 646, 688, 849, 875
MfeI	CAATTG	1 cut(s)	822
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	914
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	6 cut(s)	450, 573, 621, 625, 707, 822
MluNI	TGGCCA	1 cut(s)	522
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	900
Mox20I	TGGCCA	1 cut(s)	522
Mph1103I	ATGCAT	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	8 cut(s)	306, 390, 596, 624, 663, 755, 768, 881
Msp20I	TGGCCA	1 cut(s)	522
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	4 cut(s)	36, 42, 315, 631
MspR9I	CCNGG	1 cut(s)	357
MunI	CAATTG	1 cut(s)	822
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	47, 301
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	3 cut(s)	271, 445, 585
NlaIII	CATG	4 cut(s)	172, 278, 593, 872
NlaIV	GGNNCC	4 cut(s)	40, 156, 344, 447
NmuCI	GTSAC	1 cut(s)	602
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	872
PaeR7I	CTCGAG	1 cut(s)	644
PciSI	GCTCTTC	2 cut(s)	139, 858
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 267
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	86, 418
PflMI	CCANNNNNTGG	1 cut(s)	907
PfoI	TCCNGGA	1 cut(s)	355
PkrI	GCNGC	4 cut(s)	21, 66, 237, 804
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PshBI	ATTAAT	2 cut(s)	390, 624
Psp6I	CCWGG	1 cut(s)	355
PspFI	CCCAGC	3 cut(s)	149, 181, 396
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	4 cut(s)	40, 156, 344, 447
PspPI	GGNCC	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	644
PstI	CTGCAG	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	2 cut(s)	247, 344
RsaNI	GTAC	2 cut(s)	246, 343
SapI	GCTCTTC	2 cut(s)	139, 858
SaqAI	TTAA	8 cut(s)	306, 390, 596, 624, 663, 755, 768, 881
SatI	GCNGC	4 cut(s)	20, 65, 236, 803
Sau3AI	GATC	3 cut(s)	271, 445, 585
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	914
SfaNI	GCATC	7 cut(s)	168, 222, 361, 472, 504, 565, 835
SfcI	CTRYAG	4 cut(s)	20, 429, 435, 701
Sfr274I	CTCGAG	1 cut(s)	644
SgrAI	CRCCGGYG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	644
SmlI	CTYRAG	3 cut(s)	134, 305, 644
SmoI	CTYRAG	3 cut(s)	134, 305, 644
Sse9I	AATT	6 cut(s)	450, 573, 621, 625, 707, 822
SsiI	CCGC	4 cut(s)	62, 65, 236, 490
SspMI	CTAG	2 cut(s)	761, 937
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	2 cut(s)	114, 589
TaaI	ACNGT	3 cut(s)	208, 742, 928
TaiI	ACGT	2 cut(s)	225, 908
TaqI	TCGA	5 cut(s)	84, 261, 270, 645, 861
TasI	AATT	6 cut(s)	450, 573, 621, 625, 707, 822
TauI	GCSGC	2 cut(s)	67, 238
TfiI	GAWTC	2 cut(s)	86, 418
Tru1I	TTAA	8 cut(s)	306, 390, 596, 624, 663, 755, 768, 881
Tru9I	TTAA	8 cut(s)	306, 390, 596, 624, 663, 755, 768, 881
TscAI	CASTG	3 cut(s)	211, 262, 789
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	2 cut(s)	19, 802
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	2 cut(s)	213, 654
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	3 cut(s)	211, 262, 789
Van91I	CCANNNNNTGG	1 cut(s)	907
Vha464I	CTTAAG	1 cut(s)	305
VspI	ATTAAT	2 cut(s)	390, 624
XceI	RCATGY	1 cut(s)	872
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XhoI	CTCGAG	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	2 cut(s)	761, 937
ZraI	GACGTC	1 cut(s)	223
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.