Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008219

Physical Location & Seq

Genomic Coordinates Reverse (-)

6818418 .. 6821427

Gene Structure 3010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08550.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCAGGCATGGAGAGGCTTCAGAGGATGTTCGCCGGCGCCGGAGGAGCTTTGGGCCACCCGCCTCCTGATTCCCCCACCTTGGATTCCTCCGAGCAGGTCTACATCTCCTCCCTCGCCCTCCTCAAGATGCTTAAGCACGGAAGGGCGGGAGTTCCGATGGAAGTGATGGGCTTGATGCTTGGTGAGTTTGTGGATGAGTACACTGTTCGAGTTGTTGATGTCTTTGCGATGCCCCAGAGTGGTACCGGTGTTAGTGTCGAAGCTGTTGACCATGTTTTCCAGACTAACATGCTTGATATGCTGAAGCAGACTGGAAGACCAGAGATGGTGGTAGGGTGGTACCACTCGCATCCTGGATTTGGCTGTTGGCTATCTGGTGTGGACATTAATACACAGCAGAGCTTTGAAGCTTTGAATCAACGTGCTGTGGCTGTGGTGGTTGATCCCATCCAGAGCGTGAAAGGAAAGGTTGTCATCGATGCCTTCCGCCTTATTAACCCGCAAACAATGATGCTTGGCCAGGAACCACGGCAGACAACATCTAATCTTGGACATCTTAATAAACCCTCCATTCAAAATGAGCTTGAGGAGAAAATGCTGCTTAACCTCCACAAGAAGAAATGGACAGATGGGCTGACACTTAGACGTTTTGATAATCATTCGAAGACAAATGAGCAAACTGTTGAGGAGATGAAGAACTTGGCTGTCAAATACAACAAAGCAGTGCAAGAGGAGGATGAATTACCACCCGAGAAGCTTGCAATTGCCAACGTAGGAAGGCAGGATGCCAAGAAGCACCTCGAAGAACACGTCTCCAACCTTATGTCCTCCAACATTGTTCAGACCCTGGGAACAATGCTCGACACTGTCGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

294

Amino Acids

32.58

Weight (kDa)

5.81

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23540 AT5G23540
fragaria_vesca	FvH4_2g34740 FvH4_2g34740 FvH4_2g34740
malus_domestica	MD08G1104100.v1.1 MD15G1085300.v1.1
prunus_persica	Prupe.1G439400_v2.0.a1
pyrus_communis	pycom08g08550 pycom15g08050
rosa_chinensis	RchiOBHm_Chr6g0263451 RchiOBHm_Chr6g0307401
rosa_laevigata	RLG00000010717 RLG00000014338
rosa_multiflora	Rmu_sc0000031.1_g000014 Rmu_sc0005715.1_g000007
rosa_rugosa	Rorug06G0358400 Rorug06G0358500
rosa_samantha	Rh6BG430700 Rh6BG431500 Rh6CG484000 Rh6DG470800
rosa_wichuraiana	Rw6G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	88
Acc65I	GGTACC	2 cut(s)	245, 342
AccB1I	GGYRCC	3 cut(s)	38, 245, 342
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	4 cut(s)	62, 149, 490, 503
AclWI	GGATC	1 cut(s)	440
AcoI	YGGCCR	1 cut(s)	520
AcuI	CTGAAG	2 cut(s)	5, 326
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	3 cut(s)	203, 247, 344
AfiI	CCNNNNNNNGG	3 cut(s)	82, 242, 362
AflII	CTTAAG	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	811
AgeI	ACCGGT	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	410, 418, 578
AjiI	CACGTC	1 cut(s)	814
AjnI	CCWGG	3 cut(s)	355, 522, 849
AleI	CACNNNNGTG	1 cut(s)	872
AluBI	AGCT	6 cut(s)	50, 266, 405, 413, 586, 760
AluI	AGCT	6 cut(s)	50, 266, 405, 413, 586, 760
Alw26I	GTCTC	1 cut(s)	820
AlwI	GGATC	1 cut(s)	440
AlwNI	CAGNNNCTG	1 cut(s)	850
Ama87I	CYCGRG	1 cut(s)	752
AoxI	GGCC	2 cut(s)	55, 520
ApeKI	GCWGC	1 cut(s)	601
ArsI	GACNNNNNNTTYG	2 cut(s)	798, 830
AseI	ATTAAT	1 cut(s)	390
AsiGI	ACCGGT	1 cut(s)	248
Asp718I	GGTACC	2 cut(s)	245, 342
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	197
AsuII	TTCGAA	1 cut(s)	665
AvaI	CYCGRG	1 cut(s)	752
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BalI	TGGCCA	1 cut(s)	522
BanI	GGYRCC	3 cut(s)	38, 245, 342
BbsI	GAAGAC	2 cut(s)	325, 674
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	5 cut(s)	154, 163, 322, 458, 626
BceAI	ACGGC	1 cut(s)	548
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	3 cut(s)	357, 524, 851
BcoDI	GTCTC	1 cut(s)	820
BfaI	CTAG	1 cut(s)	880
BfoI	RGCGCY	1 cut(s)	42
BfrI	CTTAAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	603
Bme1390I	CCNGG	3 cut(s)	357, 524, 851
BmeT110I	CYCGRG	1 cut(s)	752
BmgBI	CACGTC	1 cut(s)	814
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	4 cut(s)	40, 247, 344, 528
BmrFI	CCNGG	3 cut(s)	357, 524, 851
BmsI	GCATC	7 cut(s)	120, 168, 222, 361, 472, 504, 778
BpiI	GAAGAC	2 cut(s)	325, 674
Bpu14I	TTCGAA	1 cut(s)	665
BpuEI	CTTGAG	2 cut(s)	110, 608
Bsa29I	ATCGAT	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	4 cut(s)	81, 530, 849, 850
BsaWI	WCCGGW	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 242, 362
Bse118I	RCCGGY	2 cut(s)	35, 248
Bse1I	ACTGG	1 cut(s)	319
BseBI	CCWGG	3 cut(s)	357, 524, 851
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	4 cut(s)	81, 530, 849, 850
BseGI	GGATG	6 cut(s)	33, 202, 352, 450, 745, 793
BseLI	CCNNNNNNNGG	3 cut(s)	82, 242, 362
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	6 cut(s)	60, 100, 113, 605, 704, 749
BseXI	GCAGC	1 cut(s)	588
BshFI	GGCC	2 cut(s)	57, 522
BshNI	GGYRCC	3 cut(s)	38, 245, 342
BshTI	ACCGGT	1 cut(s)	248
BshVI	ATCGAT	1 cut(s)	480
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	3 cut(s)	36, 42, 249
BslI	CCNNNNNNNGG	3 cut(s)	82, 242, 362
BsmAI	GTCTC	1 cut(s)	820
BsmBI	CGTCTC	1 cut(s)	820
BsnI	GGCC	2 cut(s)	57, 522
BsoBI	CYCGRG	1 cut(s)	752
Bsp119I	TTCGAA	1 cut(s)	665
Bsp143I	GATC	1 cut(s)	445
BspACI	CCGC	4 cut(s)	62, 149, 490, 503
BspANI	GGCC	2 cut(s)	57, 522
BspDI	ATCGAT	1 cut(s)	480
BspLI	GGNNCC	4 cut(s)	40, 247, 344, 528
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	440
BspT104I	TTCGAA	1 cut(s)	665
BspT107I	GGYRCC	3 cut(s)	38, 245, 342
BspTI	CTTAAG	1 cut(s)	134
BsrFI	RCCGGY	2 cut(s)	35, 248
BsrI	ACTGG	1 cut(s)	319
BssAI	RCCGGY	2 cut(s)	35, 248
BssECI	CCNNGG	4 cut(s)	81, 530, 849, 850
BssMI	GATC	1 cut(s)	445
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	3 cut(s)	357, 524, 851
Bst4CI	ACNGT	3 cut(s)	208, 685, 871
BstACI	GRCGYC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	665
BstC8I	GCNNGC	2 cut(s)	37, 762
BstDEI	CTNAG	1 cut(s)	644
BstDSI	CCRYGG	1 cut(s)	530
BstF5I	GGATG	6 cut(s)	33, 202, 352, 450, 745, 793
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	1 cut(s)	448
BstMAI	GTCTC	1 cut(s)	820
BstMBI	GATC	1 cut(s)	445
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 301
BstNI	CCWGG	3 cut(s)	357, 524, 851
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	3 cut(s)	355, 522, 849
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	2 cut(s)	325, 674
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	57, 522
BsuTUI	ATCGAT	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	530
BtgZI	GCGATG	1 cut(s)	245
BtrI	CACGTC	1 cut(s)	814
BtsCI	GGATG	6 cut(s)	33, 202, 352, 450, 745, 793
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	3 cut(s)	204, 732, 867
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	37, 762
CaiI	CAGNNNCTG	1 cut(s)	850
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	2 cut(s)	35, 248
Cfr13I	GGNCC	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	480
Csp6I	GTAC	3 cut(s)	202, 246, 343
CspAI	ACCGGT	1 cut(s)	248
CviAII	CATG	3 cut(s)	10, 275, 292
CviQI	GTAC	3 cut(s)	202, 246, 343
DdeI	CTNAG	1 cut(s)	644
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
EaeI	YGGCCR	1 cut(s)	520
EciI	GGCGGA	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	81
Eco57I	CTGAAG	2 cut(s)	5, 326
Eco88I	CYCGRG	1 cut(s)	752
EcoRII	CCWGG	3 cut(s)	355, 522, 849
EcoT14I	CCWWGG	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	820
FaeI	CATG	3 cut(s)	13, 278, 295
FaiI	YATR	5 cut(s)	11, 276, 293, 302, 827
FatI	CATG	3 cut(s)	9, 274, 291
FauI	CCCGC	3 cut(s)	69, 142, 510
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	602
FokI	GGATG	6 cut(s)	40, 209, 339, 437, 752, 800
Fsp4HI	GCNGC	1 cut(s)	602
FspBI	CTAG	1 cut(s)	880
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	602
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	57, 522
HapII	CCGG	3 cut(s)	36, 42, 249
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	13, 278, 295
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	2 cut(s)	411, 758
HinfI	GANTC	3 cut(s)	71, 86, 418
HpaII	CCGG	3 cut(s)	36, 42, 249
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	4 cut(s)	103, 204, 271, 385
Hpy188I	TCNGA	4 cut(s)	24, 94, 159, 846
Hpy188III	TCNNGA	4 cut(s)	68, 127, 283, 454
Hpy8I	GTNNAC	4 cut(s)	103, 204, 271, 385
HpyAV	CCTTC	3 cut(s)	138, 496, 774
HpyCH4III	ACNGT	3 cut(s)	208, 685, 871
HpyCH4IV	ACGT	4 cut(s)	424, 649, 774, 813
HpyCH4V	TGCA	2 cut(s)	730, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 301
HpyF3I	CTNAG	1 cut(s)	644
HpySE526I	ACGT	4 cut(s)	424, 649, 774, 813
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	13, 278, 295
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
KpnI	GGTACC	2 cut(s)	249, 346
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	445
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	588
LweI	GCATC	7 cut(s)	120, 168, 222, 361, 472, 504, 778
MaeI	CTAG	1 cut(s)	880
MaeII	ACGT	4 cut(s)	424, 649, 774, 813
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	5 cut(s)	330, 631, 679, 709, 818
MfeI	CAATTG	1 cut(s)	765
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	2 cut(s)	743, 765
MluNI	TGGCCA	1 cut(s)	522
Mly113I	GGCGCC	1 cut(s)	39
MmeI	TCCRAC	2 cut(s)	843, 858
Mox20I	TGGCCA	1 cut(s)	522
MreI	CGCCGGCG	1 cut(s)	35
MroNI	GCCGGC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	5 cut(s)	135, 390, 498, 561, 606
MslI	CAYNNNNRTG	1 cut(s)	872
Msp20I	TGGCCA	1 cut(s)	522
MspCI	CTTAAG	1 cut(s)	134
MspI	CCGG	3 cut(s)	36, 42, 249
MspR9I	CCNGG	3 cut(s)	357, 524, 851
MunI	CAATTG	1 cut(s)	765
MvaI	CCWGG	3 cut(s)	357, 524, 851
MwoI	GCNNNNNNNGC	2 cut(s)	47, 301
NaeI	GCCGGC	1 cut(s)	37
NarI	GGCGCC	1 cut(s)	39
NdeII	GATC	1 cut(s)	445
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	13, 278, 295
NlaIV	GGNNCC	4 cut(s)	40, 247, 344, 528
NspI	RCATGY	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	665
OliI	CACNNNNGTG	1 cut(s)	872
PasI	CCCWGGG	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	2 cut(s)	810, 870
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	3 cut(s)	71, 86, 418
PflFI	GACNNNGTC	1 cut(s)	869
PfoI	TCCNGGA	1 cut(s)	355
PinAI	ACCGGT	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	603
PluTI	GGCGCC	1 cut(s)	42
PshBI	ATTAAT	1 cut(s)	390
Psp6I	CCWGG	3 cut(s)	355, 522, 849
PspGI	CCWGG	3 cut(s)	355, 522, 849
PspN4I	GGNNCC	4 cut(s)	40, 247, 344, 528
PspPI	GGNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	850
PsyI	GACNNNGTC	1 cut(s)	869
RsaI	GTAC	3 cut(s)	203, 247, 344
RsaNI	GTAC	3 cut(s)	202, 246, 343
RseI	CAYNNNNRTG	1 cut(s)	872
SaqAI	TTAA	5 cut(s)	135, 390, 498, 561, 606
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	3 cut(s)	357, 524, 851
SfaNI	GCATC	7 cut(s)	120, 168, 222, 361, 472, 504, 778
SfoI	GGCGCC	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	665
SgrAI	CRCCGGYG	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	872
SmlI	CTYRAG	3 cut(s)	125, 134, 587
SmoI	CTYRAG	3 cut(s)	125, 134, 587
Sse9I	AATT	2 cut(s)	743, 765
SsiI	CCGC	4 cut(s)	62, 149, 490, 503
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	880
StyD4I	CCNGG	3 cut(s)	355, 522, 849
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	3 cut(s)	208, 685, 871
TaiI	ACGT	4 cut(s)	427, 652, 777, 816
TaqI	TCGA	6 cut(s)	211, 261, 480, 665, 804, 864
TasI	AATT	2 cut(s)	743, 765
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	3 cut(s)	71, 86, 418
Tru1I	TTAA	5 cut(s)	135, 390, 498, 561, 606
Tru9I	TTAA	5 cut(s)	135, 390, 498, 561, 606
TscAI	CASTG	3 cut(s)	211, 732, 874
TseI	GCWGC	1 cut(s)	601
TspDTI	ATGAA	2 cut(s)	710, 756
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	3 cut(s)	211, 732, 874
Tth111I	GACNNNGTC	1 cut(s)	869
Vha464I	CTTAAG	1 cut(s)	134
VspI	ATTAAT	1 cut(s)	390
XceI	RCATGY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.