Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008219

Physical Location & Seq

Genomic Coordinates Reverse (-)

3821263 .. 3824092

Gene Structure 2830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010717

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCAGGGATGGAGAGGCTACAGAGGATGTTCGCCGGCGCCGGGGGAGCATTGGGCCACCCACCGCCAGATTCGCCCACTCTCGATTCCTCAGAGCAGGTCTACATCTCCTCACTCGCGCTGTTGAAGATGCTTAAGCACGGAAGAGCGGGGGTTCCTATGGAGGTCATGGGCTTGATGCTGGGAGAGTTTGTGGATGAGTACACTGTTCGAGTTGTCGATGTCTTTGCTATGCCGCAGAGTGGTACTGGTGTTAGTGTCGAAGCAGTCGATCATGTGTTCCAGACTAACATGCTCGATATGCTTAAGCAGACTGGAAGAGATTTAGCTGTTTATTGGTTCTGTACTTACCCAAATGCCTTTGAAGCTTTGAATCAGCGTGCTGTTGCTGTGGTGGTGGATCCAATTCAGAGTGTGAAGGGGAAGGTGGTCATTGATGCCTTCCGCCTTATCAACCCACAGACTATGATGCTCGGTCAAGAACCTCGGCAGACCACATCCAATCTTGGCCATCTTAATAAACCATCTATTCAAGCTTTGATCCATGGGTTAAACCGGCATTATTACTCTATAGCAATCAATTACAGGAAGAATGAACTCGAGGAGAAGATGTTGCTTAACCTTCATAAGAAGAAATGGACTGATGGGCTGACCCTCAAGCGTTTTGATACTCATTCAAAAACAAATGAGCAAACTGTTCAGGAGATGTTGAGCCTAGCTGTCAAATACAACAAGGCCGTGCAGGAGGAGGATGAGTTGTCACCAGAGAAGCTTGCAATTGCAAATGTGGGAAGACAAGATGCCAAGAAGCACCTTGAAGAACATGTCTCCAACTTAATGTCCTCAAACATAGTGCAGACCTTGGGAACAATGCTCGATACTGTTGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

298

Amino Acids

33.2

Weight (kDa)

6.37

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	30 - 125	3.2e-19	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
RPN11_C	PF23594	216 - 295	1.5e-35	26S proteasome regulatory subunit RPN11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23540 AT5G23540
fragaria_vesca	FvH4_2g34740 FvH4_2g34740 FvH4_2g34740
malus_domestica	MD08G1104100.v1.1 MD15G1085300.v1.1
prunus_persica	Prupe.1G439400_v2.0.a1
pyrus_communis	pycom08g08550 pycom15g08050
rosa_chinensis	RchiOBHm_Chr6g0263451 RchiOBHm_Chr6g0307401
rosa_laevigata	RLG00000010717 RLG00000014338
rosa_multiflora	Rmu_sc0000031.1_g000014 Rmu_sc0005715.1_g000007
rosa_rugosa	Rorug06G0358400 Rorug06G0358500
rosa_samantha	Rh6BG430700 Rh6BG431500 Rh6CG484000 Rh6DG470800
rosa_wichuraiana	Rw6G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	38
AccBSI	CCGCTC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	1 cut(s)	119
AciI	CCGC	4 cut(s)	65, 149, 236, 445
AclWI	GGATC	3 cut(s)	395, 408, 535
AcoI	YGGCCR	1 cut(s)	508
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	3 cut(s)	203, 247, 346
AfiI	CCNNNNNNNGG	2 cut(s)	42, 242
AflII	CTTAAG	2 cut(s)	134, 305
AflIII	ACRYGT	1 cut(s)	823
AgsI	TTSAA	6 cut(s)	127, 365, 373, 533, 678, 818
AluBI	AGCT	5 cut(s)	329, 368, 536, 719, 772
AluI	AGCT	5 cut(s)	329, 368, 536, 719, 772
Alw26I	GTCTC	1 cut(s)	832
AlwI	GGATC	3 cut(s)	395, 408, 535
Ama87I	CYCGRG	1 cut(s)	599
AoxI	GGCC	3 cut(s)	55, 508, 735
AspLEI	GCGC	2 cut(s)	41, 121
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	753
AvaI	CYCGRG	1 cut(s)	599
BaeI	ACNNNNGTAYC	3 cut(s)	237, 270, 870
BalI	TGGCCA	1 cut(s)	510
BamHI	GGATCC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	799
BccI	CCATC	4 cut(s)	4, 519, 532, 638
BceAI	ACGGC	1 cut(s)	722
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	832
BfaI	CTAG	2 cut(s)	716, 892
BfmI	CTRYAG	2 cut(s)	20, 570
BfoI	RGCGCY	1 cut(s)	42
BfrI	CTTAAG	2 cut(s)	134, 305
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	43
BmeT110I	CYCGRG	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	3 cut(s)	40, 156, 402
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	5 cut(s)	120, 168, 427, 459, 790
BpiI	GAAGAC	1 cut(s)	799
BpuEI	CTTGAG	1 cut(s)	641
BpuMI	CCSGG	1 cut(s)	43
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	4 cut(s)	42, 485, 544, 861
BsaXI	ACNNNNNCTCC	6 cut(s)	177, 207, 596, 626, 740, 770
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 242
Bse118I	RCCGGY	2 cut(s)	35, 555
Bse1I	ACTGG	2 cut(s)	253, 319
BseDI	CCNNGG	4 cut(s)	42, 485, 544, 861
BseGI	GGATG	5 cut(s)	15, 33, 202, 497, 757
BseLI	CCNNNNNNNGG	2 cut(s)	42, 242
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	2 cut(s)	253, 319
BseRI	GAGGAG	3 cut(s)	100, 617, 761
BseYI	CCCAGC	1 cut(s)	181
BsgI	GTGCAG	2 cut(s)	761, 875
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	3 cut(s)	57, 510, 737
BshNI	GGYRCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	3 cut(s)	36, 42, 556
BslI	CCNNNNNNNGG	2 cut(s)	42, 242
BsmAI	GTCTC	1 cut(s)	832
BsnI	GGCC	3 cut(s)	57, 510, 737
BsoBI	CYCGRG	1 cut(s)	599
Bsp143I	GATC	3 cut(s)	271, 400, 540
Bsp19I	CCATGG	1 cut(s)	544
BspACI	CCGC	4 cut(s)	65, 149, 236, 445
BspANI	GGCC	3 cut(s)	57, 510, 737
BspCNI	CTCAG	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	3 cut(s)	40, 156, 402
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	395, 408, 535
BspQI	GCTCTTC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	38
BspTI	CTTAAG	2 cut(s)	134, 305
BsrBI	CCGCTC	1 cut(s)	149
BsrFI	RCCGGY	2 cut(s)	35, 555
BsrI	ACTGG	2 cut(s)	253, 319
BssAI	RCCGGY	2 cut(s)	35, 555
BssECI	CCNNGG	4 cut(s)	42, 485, 544, 861
BssMI	GATC	3 cut(s)	271, 400, 540
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	544, 861
Bst4CI	ACNGT	3 cut(s)	208, 697, 883
Bst6I	CTCTTC	2 cut(s)	139, 313
BstACI	GRCGYC	1 cut(s)	39
BstAFI	CTTAAG	2 cut(s)	134, 305
BstC8I	GCNNGC	3 cut(s)	37, 381, 774
BstDEI	CTNAG	1 cut(s)	91
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	5 cut(s)	15, 33, 202, 497, 757
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 121
BstKTI	GATC	3 cut(s)	274, 403, 543
BstMAI	GTCTC	1 cut(s)	832
BstMBI	GATC	3 cut(s)	271, 400, 540
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 73, 301, 365
BstNSI	RCATGY	2 cut(s)	295, 827
BstSCI	CCNGG	1 cut(s)	41
BstSFI	CTRYAG	2 cut(s)	20, 570
BstUI	CGCG	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	799
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	3 cut(s)	57, 510, 737
BtgI	CCRYGG	1 cut(s)	544
BtsCI	GGATG	5 cut(s)	15, 33, 202, 497, 757
BtsIMutI	CAGTG	1 cut(s)	204
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	3 cut(s)	37, 381, 774
CfoI	GCGC	2 cut(s)	41, 121
Cfr10I	RCCGGY	2 cut(s)	35, 555
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	3 cut(s)	202, 246, 345
CviAII	CATG	5 cut(s)	169, 275, 292, 545, 824
CviQI	GTAC	3 cut(s)	202, 246, 345
DdeI	CTNAG	1 cut(s)	91
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	3 cut(s)	273, 402, 542
DpnII	GATC	3 cut(s)	271, 400, 540
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	2 cut(s)	139, 313
EarI	CTCTTC	2 cut(s)	139, 313
EciI	GGCGGA	1 cut(s)	434
Eco130I	CCWWGG	2 cut(s)	544, 861
Eco88I	CYCGRG	1 cut(s)	599
EcoT14I	CCWWGG	2 cut(s)	544, 861
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	2 cut(s)	544, 861
FaeI	CATG	5 cut(s)	172, 278, 295, 548, 827
FatI	CATG	5 cut(s)	168, 274, 291, 544, 823
FauI	CCCGC	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	5 cut(s)	22, 40, 209, 484, 764
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	2 cut(s)	716, 892
GlaI	GCGC	2 cut(s)	40, 120
GluI	GCNGC	1 cut(s)	236
GsaI	CCCAGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	57, 510, 737
HapII	CCGG	3 cut(s)	36, 42, 556
HhaI	GCGC	2 cut(s)	41, 121
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	172, 278, 295, 548, 827
Hin6I	GCGC	2 cut(s)	39, 119
HinP1I	GCGC	2 cut(s)	39, 119
HindIII	AAGCTT	3 cut(s)	366, 534, 770
HinfI	GANTC	3 cut(s)	71, 86, 373
HpaII	CCGG	3 cut(s)	36, 42, 556
HphI	GGTGA	1 cut(s)	753
Hpy166II	GTNNAC	2 cut(s)	103, 204
Hpy188I	TCNGA	2 cut(s)	94, 411
Hpy188III	TCNNGA	4 cut(s)	83, 283, 479, 701
Hpy8I	GTNNAC	2 cut(s)	103, 204
HpyAV	CCTTC	4 cut(s)	412, 418, 451, 632
HpyCH4III	ACNGT	3 cut(s)	208, 697, 883
HpyCH4V	TGCA	4 cut(s)	742, 776, 782, 856
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 73, 301, 365
HpyF3I	CTNAG	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	172, 278, 295, 548, 827
HspAI	GCGC	2 cut(s)	39, 119
KasI	GGCGCC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	271, 400, 540
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	47
LweI	GCATC	5 cut(s)	120, 168, 427, 459, 790
MaeI	CTAG	2 cut(s)	716, 892
MaeIII	GTNAC	1 cut(s)	759
MalI	GATC	3 cut(s)	273, 402, 542
MbiI	CCGCTC	1 cut(s)	149
MboI	GATC	3 cut(s)	271, 400, 540
MboII	GAAGA	8 cut(s)	139, 156, 330, 601, 619, 643, 804, 830
MfeI	CAATTG	1 cut(s)	777
MflI	RGATCY	1 cut(s)	400
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	3 cut(s)	405, 580, 777
MluNI	TGGCCA	1 cut(s)	510
Mly113I	GGCGCC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	855
Mox20I	TGGCCA	1 cut(s)	510
MreI	CGCCGGCG	1 cut(s)	35
MroNI	GCCGGC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	6 cut(s)	135, 306, 516, 551, 618, 836
Msp20I	TGGCCA	1 cut(s)	510
MspCI	CTTAAG	2 cut(s)	134, 305
MspI	CCGG	3 cut(s)	36, 42, 556
MspR9I	CCNGG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	777
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	47, 73, 301, 365
NaeI	GCCGGC	1 cut(s)	37
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	43
NcoI	CCATGG	1 cut(s)	544
NdeII	GATC	3 cut(s)	271, 400, 540
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	5 cut(s)	172, 278, 295, 548, 827
NlaIV	GGNNCC	3 cut(s)	40, 156, 402
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	759
NspI	RCATGY	2 cut(s)	295, 827
PaeR7I	CTCGAG	1 cut(s)	599
PciI	ACATGT	1 cut(s)	823
PciSI	GCTCTTC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	3 cut(s)	71, 86, 373
PkrI	GCNGC	1 cut(s)	237
PluTI	GGCGCC	1 cut(s)	42
PscI	ACATGT	1 cut(s)	823
PspFI	CCCAGC	1 cut(s)	181
PspN4I	GGNNCC	3 cut(s)	40, 156, 402
PspPI	GGNCC	1 cut(s)	55
PspXI	VCTCGAGB	1 cut(s)	599
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	3 cut(s)	203, 247, 346
RsaNI	GTAC	3 cut(s)	202, 246, 345
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	6 cut(s)	135, 306, 516, 551, 618, 836
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	3 cut(s)	271, 400, 540
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	43
SfaNI	GCATC	5 cut(s)	120, 168, 427, 459, 790
SfcI	CTRYAG	2 cut(s)	20, 570
SfoI	GGCGCC	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	599
SgrAI	CRCCGGYG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	599
SmlI	CTYRAG	4 cut(s)	134, 305, 599, 656
SmoI	CTYRAG	4 cut(s)	134, 305, 599, 656
Sse9I	AATT	3 cut(s)	405, 580, 777
SsiI	CCGC	4 cut(s)	65, 149, 236, 445
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	2 cut(s)	716, 892
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	2 cut(s)	544, 861
TaaI	ACNGT	3 cut(s)	208, 697, 883
TaqI	TCGA	8 cut(s)	84, 211, 219, 261, 270, 297, 600, 876
TaqII	GACCGA	1 cut(s)	464
TasI	AATT	3 cut(s)	405, 580, 777
TatI	WGTACW	2 cut(s)	201, 344
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	3 cut(s)	71, 86, 373
Tru1I	TTAA	6 cut(s)	135, 306, 516, 551, 618, 836
Tru9I	TTAA	6 cut(s)	135, 306, 516, 551, 618, 836
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	759
Tsp45I	GTSAC	1 cut(s)	759
TspDTI	ATGAA	2 cut(s)	609, 614
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	211
Vha464I	CTTAAG	2 cut(s)	134, 305
XceI	RCATGY	2 cut(s)	295, 827
XhoI	CTCGAG	1 cut(s)	599
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	2 cut(s)	716, 892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.