Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008219

Physical Location & Seq

Genomic Coordinates Reverse (-)

8799324 .. 8802801

Gene Structure 3478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1104100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCAGGCATGGAGAGGCTTCAGAGGATGTTCGCCGGCGCCGGAGGAGCTTTGGGCCACCCGCCTCCTGATTCCCCCACCCTGGATTCCTCCGAGCAGGTCTACATCTCCTCCCTCGCCCTCCTTAAGATGCTTAAGCACGGAAGGGCGGGAGTTCCGATGGAAGTGATGGGATTGATGCTCGGTGAGTTTGTGGATGAGTACACTGTTCGAGTTGTCGATGTCTTTGCGATGCCCCAGAGTGGTACCGGTGTTAGTGTCGAAGCTGTTGACCATGTTTTCCAGACTAACATGCTTGATATGCTGAAGCAGACTGGAAGACCAGAGATGGTGGTAGGGTGGTACCACTCGCATCCTGGATTTGGCTGTTGGCTATCTGGTGTGGACATTAATACACAGCAGAGCTTTGAAGCTTTGAATCAACGTGCTGTGGCTGTGGTGGTTGATCCCATCCAGAGTGTGAAAGGAAAGGTTGTCATCGACGCCTTCCGCCTTATTAACCCACAAACAATGATGCTTGGCCAGGAACCACGGCAGACAACATCTAATCTTGGACATCTTAATAAACCATCCATTCAAGCATTGATCCACGGGTTGAACCGGCATTATTACTCGATAGCTATTAATTACAGGAAGAATGAGCTTGAGGAGAAAATGCTGCTTAACCTCCACAAGAAGAAATGGACAGATGGGTTGACACTTAGACGCTTTGATAATCATTCGAAGACAAATGAGCAAACTGTTGAGGAGATGAAGAACTTGGCTGTCAAATACAACAAAGCAGTGCAAGAGGAGGATGAATTACCACCCGAGAAGCTTGCAATCGCCAACGTAGGAAGGCAGGATGCCAAGAAGCACCTCGAAGAACACGTCTCCAACCTTATGTCCTCCAACATCGTTCAGACCCTGGGAACAATGCTCGACACTGTCGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

313

Amino Acids

34.86

Weight (kDa)

6.31

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	30 - 141	9e-35	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB	PF14464	41 - 131	1.6e-06	Prokaryotic homologs of the JAB domain
RPN11_C	PF23594	231 - 310	6.3e-34	26S proteasome regulatory subunit RPN11 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23540 AT5G23540
fragaria_vesca	FvH4_2g34740 FvH4_2g34740 FvH4_2g34740
malus_domestica	MD08G1104100.v1.1 MD15G1085300.v1.1
prunus_persica	Prupe.1G439400_v2.0.a1
pyrus_communis	pycom08g08550 pycom15g08050
rosa_chinensis	RchiOBHm_Chr6g0263451 RchiOBHm_Chr6g0307401
rosa_laevigata	RLG00000010717 RLG00000014338
rosa_multiflora	Rmu_sc0000031.1_g000014 Rmu_sc0005715.1_g000007
rosa_rugosa	Rorug06G0358400 Rorug06G0358500
rosa_samantha	Rh6BG430700 Rh6BG431500 Rh6CG484000 Rh6DG470800
rosa_wichuraiana	Rw6G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	88
Acc65I	GGTACC	2 cut(s)	245, 342
AccB1I	GGYRCC	3 cut(s)	38, 245, 342
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	3 cut(s)	62, 149, 490
AclWI	GGATC	2 cut(s)	440, 580
AcoI	YGGCCR	1 cut(s)	520
AcuI	CTGAAG	2 cut(s)	5, 326
AcyI	GRCGYC	2 cut(s)	39, 483
AfaI	GTAC	3 cut(s)	203, 247, 344
AfiI	CCNNNNNNNGG	3 cut(s)	82, 242, 362
AflII	CTTAAG	2 cut(s)	125, 134
AflIII	ACRYGT	1 cut(s)	868
AgeI	ACCGGT	1 cut(s)	248
AgsI	TTSAA	4 cut(s)	410, 418, 578, 598
AjiI	CACGTC	1 cut(s)	871
AjnI	CCWGG	4 cut(s)	81, 355, 522, 906
AleI	CACNNNNGTG	1 cut(s)	929
AluBI	AGCT	7 cut(s)	50, 266, 405, 413, 620, 643, 817
AluI	AGCT	7 cut(s)	50, 266, 405, 413, 620, 643, 817
Alw26I	GTCTC	1 cut(s)	877
AlwI	GGATC	2 cut(s)	440, 580
AlwNI	CAGNNNCTG	1 cut(s)	907
Ama87I	CYCGRG	1 cut(s)	809
AoxI	GGCC	2 cut(s)	55, 520
ApeKI	GCWGC	1 cut(s)	658
ArsI	GACNNNNNNTTYG	2 cut(s)	855, 887
AseI	ATTAAT	2 cut(s)	390, 624
AsiGI	ACCGGT	1 cut(s)	248
Asp718I	GGTACC	2 cut(s)	245, 342
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	197
AsuII	TTCGAA	1 cut(s)	722
AvaI	CYCGRG	1 cut(s)	809
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BalI	TGGCCA	1 cut(s)	522
BanI	GGYRCC	3 cut(s)	38, 245, 342
BbsI	GAAGAC	2 cut(s)	325, 731
BbvI	GCAGC	1 cut(s)	645
BccI	CCATC	6 cut(s)	154, 163, 322, 458, 577, 683
BceAI	ACGGC	1 cut(s)	548
BcgI	CGANNNNNNTGC	4 cut(s)	209, 243, 800, 834
BciT130I	CCWGG	4 cut(s)	83, 357, 524, 908
BcoDI	GTCTC	1 cut(s)	877
BfaI	CTAG	1 cut(s)	937
BfoI	RGCGCY	1 cut(s)	42
BfrI	CTTAAG	2 cut(s)	125, 134
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	659
BlsI	GCNGC	1 cut(s)	660
Bme1390I	CCNGG	4 cut(s)	83, 357, 524, 908
BmeT110I	CYCGRG	1 cut(s)	809
BmgBI	CACGTC	1 cut(s)	871
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	4 cut(s)	40, 247, 344, 528
BmrFI	CCNGG	4 cut(s)	83, 357, 524, 908
BmsI	GCATC	6 cut(s)	120, 168, 222, 361, 504, 835
BpiI	GAAGAC	2 cut(s)	325, 731
Bpu14I	TTCGAA	1 cut(s)	722
BpuEI	CTTGAG	1 cut(s)	665
BsaHI	GRCGYC	2 cut(s)	39, 483
BsaJI	CCNNGG	5 cut(s)	81, 530, 589, 906, 907
BsaWI	WCCGGW	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 242, 362
Bse118I	RCCGGY	3 cut(s)	35, 248, 600
Bse1I	ACTGG	1 cut(s)	319
BseBI	CCWGG	4 cut(s)	83, 357, 524, 908
BseDI	CCNNGG	5 cut(s)	81, 530, 589, 906, 907
BseGI	GGATG	7 cut(s)	33, 202, 352, 450, 569, 802, 850
BseLI	CCNNNNNNNGG	3 cut(s)	82, 242, 362
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	5 cut(s)	60, 100, 662, 761, 806
BseXI	GCAGC	1 cut(s)	645
BshFI	GGCC	2 cut(s)	57, 522
BshNI	GGYRCC	3 cut(s)	38, 245, 342
BshTI	ACCGGT	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	809
BsiSI	CCGG	4 cut(s)	36, 42, 249, 601
BslI	CCNNNNNNNGG	3 cut(s)	82, 242, 362
BsmAI	GTCTC	1 cut(s)	877
BsmBI	CGTCTC	1 cut(s)	877
BsnI	GGCC	2 cut(s)	57, 522
BsoBI	CYCGRG	1 cut(s)	809
Bsp119I	TTCGAA	1 cut(s)	722
Bsp143I	GATC	2 cut(s)	445, 585
BspACI	CCGC	3 cut(s)	62, 149, 490
BspANI	GGCC	2 cut(s)	57, 522
BspLI	GGNNCC	4 cut(s)	40, 247, 344, 528
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	2 cut(s)	440, 580
BspT104I	TTCGAA	1 cut(s)	722
BspT107I	GGYRCC	3 cut(s)	38, 245, 342
BspTI	CTTAAG	2 cut(s)	125, 134
BsrFI	RCCGGY	3 cut(s)	35, 248, 600
BsrI	ACTGG	1 cut(s)	319
BssAI	RCCGGY	3 cut(s)	35, 248, 600
BssECI	CCNNGG	5 cut(s)	81, 530, 589, 906, 907
BssMI	GATC	2 cut(s)	445, 585
BssNI	GRCGYC	2 cut(s)	39, 483
Bst2UI	CCWGG	4 cut(s)	83, 357, 524, 908
Bst4CI	ACNGT	3 cut(s)	208, 742, 928
BstACI	GRCGYC	2 cut(s)	39, 483
BstAFI	CTTAAG	2 cut(s)	125, 134
BstBI	TTCGAA	1 cut(s)	722
BstC8I	GCNNGC	2 cut(s)	37, 819
BstDEI	CTNAG	1 cut(s)	701
BstDSI	CCRYGG	2 cut(s)	530, 589
BstF5I	GGATG	7 cut(s)	33, 202, 352, 450, 569, 802, 850
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	2 cut(s)	448, 588
BstMAI	GTCTC	1 cut(s)	877
BstMBI	GATC	2 cut(s)	445, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 301
BstNI	CCWGG	4 cut(s)	83, 357, 524, 908
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	4 cut(s)	81, 355, 522, 906
BstV1I	GCAGC	1 cut(s)	645
BstV2I	GAAGAC	2 cut(s)	325, 731
BsuRI	GGCC	2 cut(s)	57, 522
BtgI	CCRYGG	2 cut(s)	530, 589
BtgZI	GCGATG	1 cut(s)	245
BtrI	CACGTC	1 cut(s)	871
BtsCI	GGATG	7 cut(s)	33, 202, 352, 450, 569, 802, 850
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	3 cut(s)	204, 789, 924
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	37, 819
CaiI	CAGNNNCTG	1 cut(s)	907
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	3 cut(s)	35, 248, 600
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	2 cut(s)	491, 714
Csp6I	GTAC	3 cut(s)	202, 246, 343
CspAI	ACCGGT	1 cut(s)	248
CviAII	CATG	3 cut(s)	10, 275, 292
CviQI	GTAC	3 cut(s)	202, 246, 343
DdeI	CTNAG	1 cut(s)	701
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	2 cut(s)	447, 587
DpnII	GATC	2 cut(s)	445, 585
EaeI	YGGCCR	1 cut(s)	520
EciI	GGCGGA	1 cut(s)	479
Eco57I	CTGAAG	2 cut(s)	5, 326
Eco88I	CYCGRG	1 cut(s)	809
EcoRII	CCWGG	4 cut(s)	81, 355, 522, 906
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	877
FaeI	CATG	3 cut(s)	13, 278, 295
FaiI	YATR	5 cut(s)	11, 276, 293, 302, 884
FatI	CATG	3 cut(s)	9, 274, 291
FauI	CCCGC	2 cut(s)	69, 142
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	659
FokI	GGATG	7 cut(s)	40, 209, 339, 437, 556, 809, 857
Fsp4HI	GCNGC	1 cut(s)	659
FspBI	CTAG	1 cut(s)	937
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	659
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	57, 522
HapII	CCGG	4 cut(s)	36, 42, 249, 601
HgaI	GACGC	2 cut(s)	491, 714
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	2 cut(s)	39, 483
Hin1II	CATG	3 cut(s)	13, 278, 295
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	2 cut(s)	271, 696
HindII	GTYRAC	2 cut(s)	271, 696
HindIII	AAGCTT	2 cut(s)	411, 815
HinfI	GANTC	3 cut(s)	71, 86, 418
HpaII	CCGG	4 cut(s)	36, 42, 249, 601
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	5 cut(s)	103, 204, 271, 385, 696
Hpy188I	TCNGA	4 cut(s)	24, 94, 159, 903
Hpy188III	TCNNGA	3 cut(s)	68, 283, 454
Hpy8I	GTNNAC	5 cut(s)	103, 204, 271, 385, 696
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	3 cut(s)	138, 496, 831
HpyCH4III	ACNGT	3 cut(s)	208, 742, 928
HpyCH4IV	ACGT	3 cut(s)	424, 831, 870
HpyCH4V	TGCA	2 cut(s)	787, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 301
HpyF3I	CTNAG	1 cut(s)	701
HpySE526I	ACGT	3 cut(s)	424, 831, 870
Hsp92I	GRCGYC	2 cut(s)	39, 483
Hsp92II	CATG	3 cut(s)	13, 278, 295
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
KpnI	GGTACC	2 cut(s)	249, 346
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	445, 585
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	645
LweI	GCATC	6 cut(s)	120, 168, 222, 361, 504, 835
MaeI	CTAG	1 cut(s)	937
MaeII	ACGT	3 cut(s)	424, 831, 870
MalI	GATC	2 cut(s)	447, 587
MboI	GATC	2 cut(s)	445, 585
MboII	GAAGA	6 cut(s)	330, 646, 688, 736, 766, 875
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	2 cut(s)	625, 800
MluNI	TGGCCA	1 cut(s)	522
Mly113I	GGCGCC	1 cut(s)	39
MmeI	TCCRAC	2 cut(s)	900, 915
Mox20I	TGGCCA	1 cut(s)	522
MreI	CGCCGGCG	1 cut(s)	35
MroNI	GCCGGC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	7 cut(s)	126, 135, 390, 498, 561, 624, 663
MslI	CAYNNNNRTG	1 cut(s)	929
Msp20I	TGGCCA	1 cut(s)	522
MspCI	CTTAAG	2 cut(s)	125, 134
MspI	CCGG	4 cut(s)	36, 42, 249, 601
MspR9I	CCNGG	4 cut(s)	83, 357, 524, 908
MvaI	CCWGG	4 cut(s)	83, 357, 524, 908
MwoI	GCNNNNNNNGC	2 cut(s)	47, 301
NaeI	GCCGGC	1 cut(s)	37
NarI	GGCGCC	1 cut(s)	39
NdeII	GATC	2 cut(s)	445, 585
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	13, 278, 295
NlaIV	GGNNCC	4 cut(s)	40, 247, 344, 528
NspI	RCATGY	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	722
OliI	CACNNNNGTG	1 cut(s)	929
PasI	CCCWGGG	1 cut(s)	907
PcsI	WCGNNNNNNNCGW	2 cut(s)	867, 927
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	3 cut(s)	71, 86, 418
PflFI	GACNNNGTC	1 cut(s)	926
PfoI	TCCNGGA	1 cut(s)	355
PinAI	ACCGGT	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	660
PluTI	GGCGCC	1 cut(s)	42
PshBI	ATTAAT	2 cut(s)	390, 624
Psp6I	CCWGG	4 cut(s)	81, 355, 522, 906
PspGI	CCWGG	4 cut(s)	81, 355, 522, 906
PspN4I	GGNNCC	4 cut(s)	40, 247, 344, 528
PspPI	GGNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	907
PsyI	GACNNNGTC	1 cut(s)	926
RsaI	GTAC	3 cut(s)	203, 247, 344
RsaNI	GTAC	3 cut(s)	202, 246, 343
RseI	CAYNNNNRTG	1 cut(s)	929
SaqAI	TTAA	7 cut(s)	126, 135, 390, 498, 561, 624, 663
SatI	GCNGC	1 cut(s)	659
Sau3AI	GATC	2 cut(s)	445, 585
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	4 cut(s)	83, 357, 524, 908
SfaNI	GCATC	6 cut(s)	120, 168, 222, 361, 504, 835
SfoI	GGCGCC	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	722
SgrAI	CRCCGGYG	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	929
SmlI	CTYRAG	3 cut(s)	125, 134, 644
SmoI	CTYRAG	3 cut(s)	125, 134, 644
Sse9I	AATT	2 cut(s)	625, 800
SsiI	CCGC	3 cut(s)	62, 149, 490
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	937
StyD4I	CCNGG	4 cut(s)	81, 355, 522, 906
TaaI	ACNGT	3 cut(s)	208, 742, 928
TaiI	ACGT	3 cut(s)	427, 834, 873
TaqI	TCGA	8 cut(s)	211, 219, 261, 480, 614, 722, 861, 921
TasI	AATT	2 cut(s)	625, 800
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	3 cut(s)	71, 86, 418
Tru1I	TTAA	7 cut(s)	126, 135, 390, 498, 561, 624, 663
Tru9I	TTAA	7 cut(s)	126, 135, 390, 498, 561, 624, 663
TscAI	CASTG	3 cut(s)	211, 789, 931
TseI	GCWGC	1 cut(s)	658
TspDTI	ATGAA	2 cut(s)	767, 813
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	3 cut(s)	211, 789, 931
Tth111I	GACNNNGTC	1 cut(s)	926
Vha464I	CTTAAG	2 cut(s)	125, 134
VspI	ATTAAT	2 cut(s)	390, 624
XceI	RCATGY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	102
XspI	CTAG	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.