Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008219

Physical Location & Seq

Genomic Coordinates Reverse (-)

37367491 .. 37370754

Gene Structure 3264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G439400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCAGGCATGGAGAGGCTTCAGAGGATGTTCGCTGGTGCCGGAGGAGGTTTGGGCCACCCACCTCCCGACTCGCCGACTCTCGATTCTTCCGAGCAGGTTTACATCTCCTCCCTCGCCCTCCTCAAGATGCTGAAGCACGGAAGGGCGGGAGTTCCAATGGAGGTTATGGGATTGATGCTCGGAGAGTTTGTGGATGAGTACACTGTACGTGTGGTCGATGTGTTTGCTATGCCGCAGAGTGGTACTGGTGTTAGTGTCGAAGCTGTTGATCATGTCTTCCAGACTAACATGCTTGATATGCTTAAGCAGACTGGACGACCAGAGATGGTTGTGGGGTGGTACCATTCACATCCTGGATTTGGCTGCTGGCTATCTGGTGTCGACATTAATACACAGCAGAGCTTTGAAGCATTGAATCAACGTGCTGTGGCTGTGGTGGTGGATCCAATTCAGAGTGTGAAGGGAAAGGTGGTCATTGATGCCTTCCGTCTTATCAACCCACAAACTATGATGCTTGGCCAAGAACCACGCCAGACTACATCTAATCTTGGACATCTTAATAAGCCATCCATTCAAGCATTGATCCATGGGTTAAACCGACATTATTACTCCATAGCAATTAATTACAGGAAGAATGAACTTGAGGAGAAAATGTTGCTCAACCTTCACAAGAAGAAATGGACTGATGGGTTGACACTTAGGCGCTTTGATAATCATTCAAAGACAAATGAGCAAACTGTTGAGGAGATGAAGAACTTGGCTGTCAAATACAACAAAGCAGTCCAGGAAGAGGACGAGTTACCTCCAGAGAAGCTCGCGATTGCAAACGTTGGAAGGCAGGATGCCAAGAAGCACCTTGAAGAACATGTCTCCAACCTGATGTCCTCAAACATAGTCCAGACCTTGGGAACAATGCTTGATACGGTTGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0019538 GO:0030163 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

313

Amino Acids

34.85

Weight (kDa)

6.31

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23540 AT5G23540
fragaria_vesca	FvH4_2g34740 FvH4_2g34740 FvH4_2g34740
malus_domestica	MD08G1104100.v1.1 MD15G1085300.v1.1
prunus_persica	Prupe.1G439400_v2.0.a1
pyrus_communis	pycom08g08550 pycom15g08050
rosa_chinensis	RchiOBHm_Chr6g0263451 RchiOBHm_Chr6g0307401
rosa_laevigata	RLG00000010717 RLG00000014338
rosa_multiflora	Rmu_sc0000031.1_g000014 Rmu_sc0005715.1_g000007
rosa_rugosa	Rorug06G0358400 Rorug06G0358500
rosa_samantha	Rh6BG430700 Rh6BG431500 Rh6CG484000 Rh6DG470800
rosa_wichuraiana	Rw6G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	88
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	2 cut(s)	38, 342
AccB7I	CCANNNNNTGG	1 cut(s)	907
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	1 cut(s)	821
AciI	CCGC	2 cut(s)	149, 236
AclI	AACGTT	1 cut(s)	831
AclWI	GGATC	3 cut(s)	440, 453, 580
AcoI	YGGCCR	1 cut(s)	520
AcuI	CTGAAG	2 cut(s)	5, 155
AfaI	GTAC	4 cut(s)	203, 210, 247, 344
AfiI	CCNNNNNNNGG	4 cut(s)	242, 362, 793, 907
AflII	CTTAAG	1 cut(s)	305
AflIII	ACRYGT	2 cut(s)	211, 868
AgsI	TTSAA	5 cut(s)	410, 418, 578, 723, 863
AjnI	CCWGG	2 cut(s)	355, 786
AluBI	AGCT	3 cut(s)	266, 405, 817
AluI	AGCT	3 cut(s)	266, 405, 817
Alw26I	GTCTC	1 cut(s)	877
AlwI	GGATC	3 cut(s)	440, 453, 580
AoxI	GGCC	2 cut(s)	55, 520
ApeKI	GCWGC	1 cut(s)	366
AseI	ATTAAT	2 cut(s)	390, 624
Asp718I	GGTACC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	708
AspS9I	GGNCC	1 cut(s)	55
BaeI	ACNNNNGTAYC	3 cut(s)	237, 270, 915
BalI	TGGCCA	1 cut(s)	522
BamHI	GGATCC	1 cut(s)	445
BanI	GGYRCC	2 cut(s)	38, 342
BbsI	GAAGAC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	3 cut(s)	322, 577, 683
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	2 cut(s)	357, 788
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	877
BfaI	CTAG	1 cut(s)	937
BfoI	RGCGCY	1 cut(s)	709
BfrI	CTTAAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	2 cut(s)	236, 367
BlsI	GCNGC	2 cut(s)	237, 368
Bme1390I	CCNGG	2 cut(s)	357, 788
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	3 cut(s)	40, 344, 447
BmrFI	CCNGG	2 cut(s)	357, 788
BmsI	GCATC	5 cut(s)	120, 168, 472, 504, 835
BpiI	GAAGAC	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	792
BpuEI	CTTGAG	2 cut(s)	110, 665
BsaAI	YACGTR	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	589, 906
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 177, 207, 641, 671
Bsc4I	CCNNNNNNNGG	4 cut(s)	242, 362, 793, 907
Bse1I	ACTGG	2 cut(s)	253, 319
BseBI	CCWGG	2 cut(s)	357, 788
BseDI	CCNNGG	2 cut(s)	589, 906
BseGI	GGATG	5 cut(s)	33, 202, 352, 569, 850
BseLI	CCNNNNNNNGG	4 cut(s)	242, 362, 793, 907
BseNI	ACTGG	2 cut(s)	253, 319
BseRI	GAGGAG	5 cut(s)	60, 100, 113, 662, 761
BseXI	GCAGC	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	821
BshFI	GGCC	2 cut(s)	57, 522
BshNI	GGYRCC	2 cut(s)	38, 342
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	4 cut(s)	242, 362, 793, 907
BsmAI	GTCTC	1 cut(s)	877
BsnI	GGCC	2 cut(s)	57, 522
Bsp143I	GATC	3 cut(s)	271, 445, 585
Bsp19I	CCATGG	1 cut(s)	589
Bsp68I	TCGCGA	1 cut(s)	821
BspACI	CCGC	2 cut(s)	149, 236
BspANI	GGCC	2 cut(s)	57, 522
BspFNI	CGCG	1 cut(s)	821
BspLI	GGNNCC	3 cut(s)	40, 344, 447
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	440, 453, 580
BspT107I	GGYRCC	2 cut(s)	38, 342
BspTI	CTTAAG	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	253, 319
BssECI	CCNNGG	2 cut(s)	589, 906
BssMI	GATC	3 cut(s)	271, 445, 585
BssT1I	CCWWGG	2 cut(s)	589, 906
Bst2UI	CCWGG	2 cut(s)	357, 788
Bst4CI	ACNGT	3 cut(s)	208, 742, 928
Bst6I	CTCTTC	1 cut(s)	786
BstAFI	CTTAAG	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	371, 819
BstDEI	CTNAG	1 cut(s)	701
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	5 cut(s)	33, 202, 352, 569, 850
BstFNI	CGCG	1 cut(s)	821
BstH2I	RGCGCY	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	708
BstKTI	GATC	3 cut(s)	274, 448, 588
BstMAI	GTCTC	1 cut(s)	877
BstMBI	GATC	3 cut(s)	271, 445, 585
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	2 cut(s)	357, 788
BstNSI	RCATGY	2 cut(s)	295, 872
BstSCI	CCNGG	2 cut(s)	355, 786
BstUI	CGCG	1 cut(s)	821
BstV1I	GCAGC	1 cut(s)	353
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	57, 522
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	5 cut(s)	33, 202, 352, 569, 850
BtsIMutI	CAGTG	1 cut(s)	204
BtuMI	TCGCGA	1 cut(s)	821
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	371, 819
CfoI	GCGC	1 cut(s)	708
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	4 cut(s)	202, 209, 246, 343
CviAII	CATG	5 cut(s)	10, 275, 292, 590, 869
CviQI	GTAC	4 cut(s)	202, 209, 246, 343
DdeI	CTNAG	1 cut(s)	701
DpnI	GATC	3 cut(s)	273, 447, 587
DpnII	GATC	3 cut(s)	271, 445, 585
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Eco130I	CCWWGG	2 cut(s)	589, 906
Eco57I	CTGAAG	2 cut(s)	5, 155
EcoRII	CCWGG	2 cut(s)	355, 786
EcoT14I	CCWWGG	2 cut(s)	589, 906
ErhI	CCWWGG	2 cut(s)	589, 906
FaeI	CATG	5 cut(s)	13, 278, 295, 593, 872
FatI	CATG	5 cut(s)	9, 274, 291, 589, 868
FauI	CCCGC	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	236, 367
FokI	GGATG	5 cut(s)	40, 209, 339, 556, 857
Fsp4HI	GCNGC	2 cut(s)	236, 367
FspBI	CTAG	1 cut(s)	937
GlaI	GCGC	1 cut(s)	707
GluI	GCNGC	2 cut(s)	236, 367
GsuI	CTGGAG	1 cut(s)	792
HaeII	RGCGCY	1 cut(s)	709
HaeIII	GGCC	2 cut(s)	57, 522
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	708
Hin1II	CATG	5 cut(s)	13, 278, 295, 593, 872
Hin6I	GCGC	1 cut(s)	706
HinP1I	GCGC	1 cut(s)	706
HincII	GTYRAC	2 cut(s)	385, 696
HindII	GTYRAC	2 cut(s)	385, 696
HinfI	GANTC	4 cut(s)	71, 79, 86, 418
HpaII	CCGG	1 cut(s)	42
Hpy166II	GTNNAC	4 cut(s)	103, 204, 385, 696
Hpy188I	TCNGA	4 cut(s)	24, 94, 185, 456
Hpy188III	TCNNGA	7 cut(s)	68, 83, 127, 283, 809, 820, 901
Hpy8I	GTNNAC	4 cut(s)	103, 204, 385, 696
HpyAV	CCTTC	5 cut(s)	138, 457, 496, 677, 831
HpyCH4III	ACNGT	3 cut(s)	208, 742, 928
HpyCH4IV	ACGT	3 cut(s)	211, 424, 831
HpyCH4V	TGCA	1 cut(s)	827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	1 cut(s)	701
HpySE526I	ACGT	3 cut(s)	211, 424, 831
Hsp92II	CATG	5 cut(s)	13, 278, 295, 593, 872
HspAI	GCGC	1 cut(s)	706
KpnI	GGTACC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	271, 445, 585
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	5 cut(s)	120, 168, 472, 504, 835
MaeI	CTAG	1 cut(s)	937
MaeII	ACGT	3 cut(s)	211, 424, 831
MaeIII	GTNAC	1 cut(s)	801
MalI	GATC	3 cut(s)	273, 447, 587
MboI	GATC	3 cut(s)	271, 445, 585
MboII	GAAGA	7 cut(s)	81, 271, 646, 688, 766, 803, 875
MflI	RGATCY	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	3 cut(s)	450, 621, 625
MluNI	TGGCCA	1 cut(s)	522
MlyI	GAGTC	2 cut(s)	65, 73
MmeI	TCCRAC	2 cut(s)	814, 900
Mox20I	TGGCCA	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	5 cut(s)	306, 390, 561, 596, 624
Msp20I	TGGCCA	1 cut(s)	522
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	357, 788
MvaI	CCWGG	2 cut(s)	357, 788
MvnI	CGCG	1 cut(s)	821
MwoI	GCNNNNNNNGC	1 cut(s)	301
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	3 cut(s)	271, 445, 585
NlaIII	CATG	5 cut(s)	13, 278, 295, 593, 872
NlaIV	GGNNCC	3 cut(s)	40, 344, 447
NruI	TCGCGA	1 cut(s)	821
NspI	RCATGY	2 cut(s)	295, 872
PciI	ACATGT	1 cut(s)	868
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	86, 418
PflMI	CCANNNNNTGG	1 cut(s)	907
PfoI	TCCNGGA	2 cut(s)	355, 786
PkrI	GCNGC	2 cut(s)	237, 368
PleI	GAGTC	2 cut(s)	65, 73
PpsI	GAGTC	2 cut(s)	65, 73
Ppu21I	YACGTR	1 cut(s)	212
PscI	ACATGT	1 cut(s)	868
PshBI	ATTAAT	2 cut(s)	390, 624
Psp1406I	AACGTT	1 cut(s)	831
Psp6I	CCWGG	2 cut(s)	355, 786
PspGI	CCWGG	2 cut(s)	355, 786
PspN4I	GGNNCC	3 cut(s)	40, 344, 447
PspPI	GGNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	445
RruI	TCGCGA	1 cut(s)	821
RsaI	GTAC	4 cut(s)	203, 210, 247, 344
RsaNI	GTAC	4 cut(s)	202, 209, 246, 343
SalI	GTCGAC	1 cut(s)	383
SaqAI	TTAA	5 cut(s)	306, 390, 561, 596, 624
SatI	GCNGC	2 cut(s)	236, 367
Sau3AI	GATC	3 cut(s)	271, 445, 585
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	2 cut(s)	65, 73
ScrFI	CCNGG	2 cut(s)	357, 788
SfaNI	GCATC	5 cut(s)	120, 168, 472, 504, 835
SmlI	CTYRAG	3 cut(s)	125, 305, 644
SmoI	CTYRAG	3 cut(s)	125, 305, 644
Sse9I	AATT	3 cut(s)	450, 621, 625
SsiI	CCGC	2 cut(s)	149, 236
SspMI	CTAG	1 cut(s)	937
StyD4I	CCNGG	2 cut(s)	355, 786
StyI	CCWWGG	2 cut(s)	589, 906
TaaI	ACNGT	3 cut(s)	208, 742, 928
TaiI	ACGT	3 cut(s)	214, 427, 834
TaqI	TCGA	4 cut(s)	84, 219, 261, 384
TasI	AATT	3 cut(s)	450, 621, 625
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	2 cut(s)	86, 418
Tru1I	TTAA	5 cut(s)	306, 390, 561, 596, 624
Tru9I	TTAA	5 cut(s)	306, 390, 561, 596, 624
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	366
TspDTI	ATGAA	2 cut(s)	654, 767
TspGWI	ACGGA	2 cut(s)	156, 479
TspRI	CASTG	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	907
Vha464I	CTTAAG	1 cut(s)	305
VspI	ATTAAT	2 cut(s)	390, 624
XceI	RCATGY	2 cut(s)	295, 872
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.