Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014091

Physical Location & Seq

Genomic Coordinates Forward (+)

8005097 .. 8006630

Gene Structure 1534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAACACTCTTCATCCTCACAAGCAGCAACAAGAACAAGCACAACAACAAGAAGAAGCTAGATACGAATGGGATCTTTCTCTCTCCACCGTCGTATCTTCCTCCTCCTCCTCCGCCTCCGACGTTATCGGAGCTATTGAATTCGATCCCACTGATAACATCGTCGCTACCGCCGGGATTTCAAGAAAGATTCGTTTTTACGGCCTCCCTTCTCTTTTACGTAACAACGCTGTCTCCGGTACCGGAGTTTCCTTCGTCGATCAAGCCACCGCCTGCGAATATTACATCTGTACTCCGGCGAAACTTAGTAGTCTCCGGTGGAGACCCGGGTCGGGCGGTCGGGTTATTGGGTCGGGAGATTACGACGGCGTAGTGATGGAGTACGATCTTGAGAAGAGGACGCCGGTATTCGAAAGGGACGAGCACGGTGGTCGTCGTGTATGGAGCGTAGATTACACTCGTCACGGCGGCGCTTCGACGGTGGGCGCGTCGGGATCGGATGACGGGACTATGCAAGTATGGGATCCGAGGTGTCCGCCGGAAGAATCTGTCGGTGTTGTACGACCGGCGGGGATTTGCCGGAGTGCTGTTTGTTGCGTCGAGTTCGATCCTTCCGGTGGACCAGCCGTGGCCGTCGGATGCGCTGATCGGAAAGGGTACGTTTACGATATAAGGAAACTCGTTGACCCGGCGTTGACTTTACAAGGTCATACGAAAACGGTGTCGTATGTGAGGTTCCTCGACGGTGGGACGGTGGTGACGGCAGGTACGGACGGTTGTTTGAAGCTGTGGAGCGTGGAGGATGGGCGCGTGATTCGCACGTACGAAGGGCATGTGAATAATCGGAACTTCGTGGGGTTATCTGTGTGGAGAAACGGCGCGTTGTTTGGTTGTGGATCGGAAAACAACAGGGTGTTTGTGTACGATAGGAGATGGGGGAAGCCGGTTTGGGTAGATGGGTTTGAACCAGTTGGTATGAATTCTGGTTCGGATAAGCGGTTCGTGAGTAGCGTCTGTTGGAGGCAATCAGGTGTGGACCAGTGTACCCTAGTGGCTGGAGGATCTGATGGAGTATTACAGGTTTACGTGGGCAAAAGAAAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009657 GO:0009658 GO:0009791 GO:0009812 GO:0009987 GO:0010114 GO:0010119 GO:0010218 GO:0010224 GO:0010228 GO:0016043 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043393 GO:0043412 GO:0043496 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051098 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40

Protein Analysis

368

Amino Acids

40.0

Weight (kDa)

6.33

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	90 - 227	7.1e-06	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	99 - 242	2.5e-09	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	102 - 310	1.4e-17	WDR5 beta-propeller domain
WD40_Prp19	PF24814	103 - 361	3.8e-11	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	118 - 252	5.8e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_EML	PF23409	144 - 310	3.7e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta	PF25391	156 - 311	3.8e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st	PF25173	194 - 309	3.8e-11	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	194 - 280	7.7e-08	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	195 - 344	2.9e-10	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	195 - 361	3.4e-07	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	234 - 362	3.1e-08	CDC20/Fizzy WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23730
fragaria_vesca	FvH4_7g29370
malus_domestica	MD01G1199700.v1.1 MD07G1267700.v1.1
prunus_persica	Prupe.2G293400_v2.0.a1
pyrus_communis	pycom01g20980 pycom07g24530
rosa_chinensis	RchiOBHm_Chr1g0377161
rosa_laevigata	RLG00000026540
rosa_multiflora	Rmu_ssc0000155.1_g000016
rosa_roxburghii	Rroxscaffold_4G00281420
rosa_rugosa	Rorug01G0401700
rosa_samantha	Rh1AG419100 Rh1BG378200 Rh1CG392200 Rh1DG408900
rosa_wichuraiana	Rw1G036760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	755
Acc65I	GGTACC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	239
AccII	CGCG	3 cut(s)	488, 810, 881
AciI	CCGC	8 cut(s)	114, 171, 270, 336, 468, 536, 569, 997
AclWI	GGATC	8 cut(s)	81, 140, 502, 518, 531, 602, 904, 1069
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	2 cut(s)	140, 979
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	9 cut(s)	241, 292, 383, 561, 659, 769, 824, 923, 1045
AfiI	CCNNNNNNNGG	2 cut(s)	332, 617
AgsI	TTSAA	4 cut(s)	140, 183, 784, 965
AloI	GAACNNNNNNTCC	2 cut(s)	983, 1015
AluBI	AGCT	3 cut(s)	59, 134, 787
AluI	AGCT	3 cut(s)	59, 134, 787
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	3 cut(s)	238, 316, 317
AlwI	GGATC	8 cut(s)	81, 140, 502, 518, 531, 602, 904, 1069
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	2 cut(s)	202, 630
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	140, 979
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
Asp718I	GGTACC	1 cut(s)	239
AspLEI	GCGC	5 cut(s)	473, 488, 644, 810, 881
AspS9I	GGNCC	2 cut(s)	620, 1036
AsuC2I	CCSGG	4 cut(s)	175, 327, 328, 689
AsuHPI	GGTGA	1 cut(s)	769
AsuII	TTCGAA	1 cut(s)	411
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	620, 1036
BaeI	ACNNNNGTAYC	6 cut(s)	78, 111, 231, 264, 1027, 1060
BamHI	GGATCC	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	5 cut(s)	370, 797, 927, 950, 1061
BceAI	ACGGC	7 cut(s)	217, 382, 481, 611, 617, 777, 892
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BcnI	CCSGG	4 cut(s)	175, 327, 328, 689
BcoDI	GTCTC	3 cut(s)	238, 316, 317
BfaI	CTAG	2 cut(s)	60, 1049
BfoI	RGCGCY	1 cut(s)	474
BfuAI	ACCTGC	1 cut(s)	755
BisI	GCNGC	2 cut(s)	26, 469
BlsI	GCNGC	2 cut(s)	27, 470
Bme1390I	CCNGG	4 cut(s)	175, 327, 328, 689
Bme18I	GGWCC	2 cut(s)	620, 1036
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	620, 1036
BmiI	GGNNCC	3 cut(s)	241, 525, 737
BmrFI	CCNGG	4 cut(s)	175, 327, 328, 689
BmsI	GCATC	1 cut(s)	629
BoxI	GACNNNNGTC	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	1077
Bpu14I	TTCGAA	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	4 cut(s)	175, 327, 328, 689
BsaAI	YACGTR	3 cut(s)	221, 822, 1087
BsaHI	GRCGYC	1 cut(s)	401
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	3 cut(s)	326, 527, 627
BsaWI	WCCGGW	4 cut(s)	236, 242, 315, 614
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 617
Bse118I	RCCGGY	3 cut(s)	403, 565, 943
Bse1I	ACTGG	2 cut(s)	968, 1039
BseDI	CCNNGG	3 cut(s)	326, 527, 627
BseGI	GGATG	4 cut(s)	13, 505, 644, 808
BseLI	CCNNNNNNNGG	2 cut(s)	332, 617
BseNI	ACTGG	2 cut(s)	968, 1039
BseRI	GAGGAG	3 cut(s)	94, 97, 100
BseXI	GCAGC	1 cut(s)	37
Bsh1236I	CGCG	3 cut(s)	488, 810, 881
Bsh1285I	CGRYCG	2 cut(s)	340, 566
BshFI	GGCC	2 cut(s)	204, 632
BshNI	GGYRCC	1 cut(s)	239
BsiEI	CGRYCG	2 cut(s)	340, 566
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	326
BsiWI	CGTACG	1 cut(s)	822
BslFI	GGGAC	3 cut(s)	431, 520, 763
BslI	CCNNNNNNNGG	2 cut(s)	332, 617
BsmAI	GTCTC	3 cut(s)	238, 316, 317
BsmFI	GGGAC	3 cut(s)	431, 520, 763
BsnI	GGCC	2 cut(s)	204, 632
Bso31I	GGTCTC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	326
Bsp119I	TTCGAA	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	426
BspACI	CCGC	8 cut(s)	114, 171, 270, 336, 468, 536, 569, 997
BspANI	GGCC	2 cut(s)	204, 632
BspFNI	CGCG	3 cut(s)	488, 810, 881
BspLI	GGNNCC	3 cut(s)	241, 525, 737
BspMI	ACCTGC	1 cut(s)	755
BspPI	GGATC	8 cut(s)	81, 140, 502, 518, 531, 602, 904, 1069
BspT104I	TTCGAA	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	316
BsrFI	RCCGGY	3 cut(s)	403, 565, 943
BsrI	ACTGG	2 cut(s)	968, 1039
BssAI	RCCGGY	3 cut(s)	403, 565, 943
BssECI	CCNNGG	3 cut(s)	326, 527, 627
BssNI	GRCGYC	1 cut(s)	401
Bst4CI	ACNGT	7 cut(s)	91, 428, 481, 721, 746, 754, 776
Bst6I	CTCTTC	2 cut(s)	15, 389
BstACI	GRCGYC	1 cut(s)	401
BstBAI	YACGTR	3 cut(s)	221, 822, 1087
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	305
BstDSI	CCRYGG	1 cut(s)	627
BstF5I	GGATG	4 cut(s)	13, 505, 644, 808
BstFNI	CGCG	3 cut(s)	488, 810, 881
BstH2I	RGCGCY	1 cut(s)	474
BstHHI	GCGC	5 cut(s)	473, 488, 644, 810, 881
BstMAI	GTCTC	3 cut(s)	238, 316, 317
BstMCI	CGRYCG	2 cut(s)	340, 566
BstMWI	GCNNNNNNNGC	1 cut(s)	816
BstNSI	RCATGY	1 cut(s)	836
BstPAI	GACNNNNGTC	1 cut(s)	328
BstSCI	CCNGG	4 cut(s)	173, 325, 326, 687
BstSNI	TACGTA	1 cut(s)	221
BstUI	CGCG	3 cut(s)	488, 810, 881
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	3 cut(s)	73, 523, 1061
BstYI	RGATCY	3 cut(s)	73, 523, 1061
BsuRI	GGCC	2 cut(s)	204, 632
BtgI	CCRYGG	1 cut(s)	627
BtsCI	GGATG	4 cut(s)	13, 505, 644, 808
BtsIMutI	CAGTG	2 cut(s)	150, 1046
BveI	ACCTGC	1 cut(s)	755
Cac8I	GCNNGC	1 cut(s)	274
CfoI	GCGC	5 cut(s)	473, 488, 644, 810, 881
Cfr10I	RCCGGY	3 cut(s)	403, 565, 943
Cfr13I	GGNCC	2 cut(s)	620, 1036
Cfr9I	CCCGGG	1 cut(s)	326
CseI	GACGC	4 cut(s)	409, 477, 586, 1000
Csp6I	GTAC	9 cut(s)	240, 291, 382, 560, 658, 768, 823, 922, 1044
CviAII	CATG	1 cut(s)	833
CviJI	RGCY	9 cut(s)	59, 134, 204, 266, 626, 632, 787, 943, 1055
CviKI_1	RGCY	9 cut(s)	59, 134, 204, 266, 626, 632, 787, 943, 1055
CviQI	GTAC	9 cut(s)	240, 291, 382, 560, 658, 768, 823, 922, 1044
DdeI	CTNAG	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	2 cut(s)	15, 389
EarI	CTCTTC	2 cut(s)	15, 389
EciI	GGCGGA	2 cut(s)	103, 525
Eco105I	TACGTA	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	620, 1036
Eco88I	CYCGRG	1 cut(s)	326
EcoRI	GAATTC	2 cut(s)	140, 979
FaeI	CATG	1 cut(s)	836
FaiI	YATR	9 cut(s)	442, 512, 520, 671, 711, 729, 834, 977, 1105
FaqI	GGGAC	3 cut(s)	431, 520, 763
FatI	CATG	1 cut(s)	832
FauI	CCCGC	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	26, 469
FokI	GGATG	3 cut(s)	512, 651, 815
Fsp4HI	GCNGC	2 cut(s)	26, 469
FspBI	CTAG	2 cut(s)	60, 1049
GlaI	GCGC	5 cut(s)	472, 487, 643, 809, 880
GluI	GCNGC	2 cut(s)	26, 469
GsuI	CTGGAG	1 cut(s)	1077
HaeII	RGCGCY	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	204, 632
HgaI	GACGC	4 cut(s)	409, 477, 586, 1000
HhaI	GCGC	5 cut(s)	473, 488, 644, 810, 881
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	1 cut(s)	836
Hin6I	GCGC	5 cut(s)	471, 486, 642, 808, 879
HinP1I	GCGC	5 cut(s)	471, 486, 642, 808, 879
HincII	GTYRAC	2 cut(s)	685, 696
HindII	GTYRAC	2 cut(s)	685, 696
HinfI	GANTC	3 cut(s)	190, 545, 814
HphI	GGTGA	1 cut(s)	769
Hpy166II	GTNNAC	8 cut(s)	620, 664, 685, 696, 922, 1036, 1044, 1084
Hpy188III	TCNNGA	5 cut(s)	183, 354, 389, 492, 1003
Hpy8I	GTNNAC	8 cut(s)	620, 664, 685, 696, 922, 1036, 1044, 1084
HpyAV	CCTTC	4 cut(s)	219, 262, 621, 821
HpyCH4III	ACNGT	7 cut(s)	91, 428, 481, 721, 746, 754, 776
HpyCH4IV	ACGT	5 cut(s)	123, 220, 660, 821, 1086
HpyCH4V	TGCA	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	816
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	5 cut(s)	123, 220, 660, 821, 1086
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	1 cut(s)	836
HspAI	GCGC	5 cut(s)	471, 486, 642, 808, 879
KpnI	GGTACC	1 cut(s)	243
LmnI	GCTCC	3 cut(s)	131, 444, 792
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	629
MaeI	CTAG	2 cut(s)	60, 1049
MaeII	ACGT	5 cut(s)	123, 220, 660, 821, 1086
MaeIII	GTNAC	3 cut(s)	221, 461, 757
MboII	GAAGA	4 cut(s)	65, 90, 406, 554
MflI	RGATCY	3 cut(s)	73, 523, 1061
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	2 cut(s)	140, 979
MmeI	TCCRAC	3 cut(s)	144, 616, 998
MspR9I	CCNGG	4 cut(s)	175, 327, 328, 689
MvnI	CGCG	3 cut(s)	488, 810, 881
MwoI	GCNNNNNNNGC	1 cut(s)	816
NciI	CCSGG	4 cut(s)	175, 327, 328, 689
NlaIII	CATG	1 cut(s)	836
NlaIV	GGNNCC	3 cut(s)	241, 525, 737
NmuCI	GTSAC	2 cut(s)	461, 757
NspI	RCATGY	1 cut(s)	836
NspV	TTCGAA	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	3 cut(s)	417, 485, 1008
PfeI	GAWTC	3 cut(s)	190, 545, 814
Pfl23II	CGTACG	1 cut(s)	822
PkrI	GCNGC	2 cut(s)	27, 470
Ppu21I	YACGTR	3 cut(s)	221, 822, 1087
PshAI	GACNNNNGTC	1 cut(s)	328
PspLI	CGTACG	1 cut(s)	822
PspN4I	GGNNCC	3 cut(s)	241, 525, 737
PspPI	GGNCC	2 cut(s)	620, 1036
PsrI	GAACNNNNNNTAC	2 cut(s)	719, 751
PsuI	RGATCY	3 cut(s)	73, 523, 1061
RsaI	GTAC	9 cut(s)	241, 292, 383, 561, 659, 769, 824, 923, 1045
RsaNI	GTAC	9 cut(s)	240, 291, 382, 560, 658, 768, 823, 922, 1044
SatI	GCNGC	2 cut(s)	26, 469
Sau96I	GGNCC	2 cut(s)	620, 1036
ScrFI	CCNGG	4 cut(s)	175, 327, 328, 689
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	629
SfuI	TTCGAA	1 cut(s)	411
SinI	GGWCC	2 cut(s)	620, 1036
SmaI	CCCGGG	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SnaBI	TACGTA	1 cut(s)	221
Sse9I	AATT	2 cut(s)	140, 979
SsiI	CCGC	8 cut(s)	114, 171, 270, 336, 468, 536, 569, 997
SspI	AATATT	1 cut(s)	281
SspMI	CTAG	2 cut(s)	60, 1049
StyD4I	CCNGG	4 cut(s)	173, 325, 326, 687
TaaI	ACNGT	7 cut(s)	91, 428, 481, 721, 746, 754, 776
TaiI	ACGT	5 cut(s)	126, 223, 663, 824, 1089
TaqI	TCGA	7 cut(s)	144, 258, 411, 476, 600, 606, 741
TasI	AATT	2 cut(s)	140, 979
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	3 cut(s)	190, 545, 814
TscAI	CASTG	2 cut(s)	157, 1046
TseFI	GTSAC	2 cut(s)	461, 757
TseI	GCWGC	1 cut(s)	25
Tsp45I	GTSAC	2 cut(s)	461, 757
TspDTI	ATGAA	2 cut(s)	17, 992
TspGWI	ACGGA	1 cut(s)	785
TspMI	CCCGGG	1 cut(s)	326
TspRI	CASTG	2 cut(s)	157, 1046
VpaK11BI	GGWCC	2 cut(s)	620, 1036
XapI	RAATTY	2 cut(s)	140, 979
XceI	RCATGY	1 cut(s)	836
XmaI	CCCGGG	1 cut(s)	326
XspI	CTAG	2 cut(s)	60, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.