Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014091

Physical Location & Seq

Genomic Coordinates Forward (+)

65990959 .. 65994212

Gene Structure 3254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG392200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGCTAGGGTACGGGAGCCTTTGGTTGGTACAGAAACACCCCCAATGCCTCCAAAACTTAACATCTCCACCACCACCGCCCCTTAAACATGACTGGGCGATGAACCCACCTTTCCATTTCCCAGTCCCACAACCACTCCAAAACCCAGACCAACAACAACAACAACAAGTTCAAGATAACAAACCCACCGTCGATGATCATCATCTTCATAAGTCCAGGTTCGAATGGGACTTCACTCTCTCCACGGTCGTCTCCTCCCCCACCGCCACCGGCGCCGTCTCCAACACTCTCGGAGTAATCGAGTTCGACCCATCGGAGACTGTTCTAGCCACCGGAGGCATAGCCAGGAAGATTAGAATCTACAGCGTCAAGTCTCTCCTGCCGAGTCATGAACAGCCTAAGGACGACGTCGTTTCGCTAGACCACGCTGCTGCATGCGACTATTACATTTGCACCCCCGCCAAGCTCAGCAGCCTCCGCTGGCGGCCCGGGTCTAGCGGCCGGGTCCTCGGGTCTGGGGACTACGACGGCGTCGTCACGGAGTACGATCTCGAGTCCCACCTCCCCATCTTCGAGCGCGACGAGCACGGCGGGCGCCGGGTCTGGAGCCTCGACTACTCGGATTCGGATCCGGTTCTCGGGGCATCCGGATCCGATGACGGGACCCTTCAAATGTGGGACCCGCGGTGCGAGGGCGGGGACTGTGTGGCTAGAGTGGCTCCTTCCGAATCGGGTAACCCGGTTTGTTGCGTGGAGTTCAATCCCTTCGGTGGGCCGCTCCTGGCCGTCGGATGCGCTGACCGGAAAGCCTACGTCTACGATGTGAGGAGAATGGCGGGCCCGGTTTTGAGTTTTGACGGCCACGATAAGACCGTGACGTACGTCAGGTTCCTTAACGGCCGTTCGATGGTGTCAGCCGGAACAGACGGGTGTCTGAAGATGTGGAGCGTGGATGACGCGCGGGAAATTCGGACGTATTCGGGCCATACCAACAATCGGAGCTTTGTCGGGTTGTCGGTTTGGAGAAACGGTGGGCTTCTCGGATGCGGGTCGGAAAATAATCAGGTGTTTGTATATGATGTTAGGTGGGGTGAGCCTGTTTGGGTGCATGGGTTTGGACCAATGGGAAGCGAGGGTTGTGATGACCGTGGGTTTGTGAGCAGCGTGTGCTGGCGGCAGATGGGCGGTGAGGAACAGTGTACCCTCATGGCGGGTGGATCCGATGGGGTTTTGCAGGTTTTTGTGGGTAGAAGAAAGTCATTAGCTTCGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009657 GO:0009658 GO:0009791 GO:0009812 GO:0009987 GO:0010114 GO:0010119 GO:0010218 GO:0010224 GO:0010228 GO:0016043 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043393 GO:0043412 GO:0043496 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051098 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40

Protein Analysis

424

Amino Acids

46.49

Weight (kDa)

5.36

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	96 - 362	4.1e-22	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	154 - 293	2.3e-10	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	155 - 362	1.2e-17	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	166 - 334	1.1e-12	TEP-1 second beta-propeller
WDR55	PF24796	169 - 361	2.5e-07	WDR55
Beta-prop_EML_2	PF23414	172 - 298	4.9e-08	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_EML	PF23409	198 - 360	9e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta	PF25391	209 - 363	4.2e-06	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	215 - 330	7.5e-12	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	246 - 335	1.9e-07	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	247 - 365	3e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	247 - 361	7.6e-13	WDR3 first beta-propeller domain
Beta-prop_DCAF4	PF23761	258 - 347	1.6e-06	DDB1- and CUL4-associated factor 4 beta-propeller domain
WD40_CDC20-Fz	PF24807	288 - 414	2.5e-07	CDC20/Fizzy WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23730
fragaria_vesca	FvH4_7g29370
malus_domestica	MD01G1199700.v1.1 MD07G1267700.v1.1
prunus_persica	Prupe.2G293400_v2.0.a1
pyrus_communis	pycom01g20980 pycom07g24530
rosa_chinensis	RchiOBHm_Chr1g0377161
rosa_laevigata	RLG00000026540
rosa_multiflora	Rmu_ssc0000155.1_g000016
rosa_roxburghii	Rroxscaffold_4G00281420
rosa_rugosa	Rorug01G0401700
rosa_samantha	Rh1AG419100 Rh1BG378200 Rh1CG392200 Rh1DG408900
rosa_wichuraiana	Rw1G036760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	533
AatII	GACGTC	1 cut(s)	411
Acc36I	ACCTGC	1 cut(s)	1225
AccB1I	GGYRCC	2 cut(s)	272, 594
AccBSI	CCGCTC	1 cut(s)	778
AccI	GTMKAC	1 cut(s)	816
AccII	CGCG	4 cut(s)	579, 685, 959, 961
AccIII	TCCGGA	1 cut(s)	647
AclWI	GGATC	6 cut(s)	623, 636, 645, 658, 1212, 1225
AcoI	YGGCCR	4 cut(s)	499, 783, 859, 898
AcsI	RAATTY	1 cut(s)	966
AcuI	CTGAAG	1 cut(s)	956
AcyI	GRCGYC	4 cut(s)	273, 408, 531, 595
AfaI	GTAC	5 cut(s)	11, 30, 545, 881, 1201
AfiI	CCNNNNNNNGG	8 cut(s)	25, 638, 660, 770, 771, 907, 996, 1210
AgsI	TTSAA	3 cut(s)	173, 671, 760
AjnI	CCWGG	3 cut(s)	215, 344, 780
AluBI	AGCT	3 cut(s)	466, 1002, 1265
AluI	AGCT	3 cut(s)	466, 1002, 1265
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	4 cut(s)	256, 283, 311, 378
AlwI	GGATC	6 cut(s)	623, 636, 645, 658, 1212, 1225
Ama87I	CYCGRG	4 cut(s)	488, 509, 551, 638
Aor13HI	TCCGGA	1 cut(s)	647
AoxI	GGCC	8 cut(s)	485, 499, 773, 783, 838, 859, 898, 982
ApaI	GGGCCC	1 cut(s)	842
ApeKI	GCWGC	4 cut(s)	428, 431, 471, 1161
ApoI	RAATTY	1 cut(s)	966
ArsI	GACNNNNNNTTYG	4 cut(s)	174, 206, 1136, 1168
AspLEI	GCGC	5 cut(s)	275, 579, 597, 797, 961
AspS9I	GGNCC	9 cut(s)	486, 505, 663, 679, 773, 838, 839, 982, 1118
AsuC2I	CCSGG	6 cut(s)	489, 490, 503, 599, 740, 842
AsuHPI	GGTGA	2 cut(s)	1103, 1199
AsuII	TTCGAA	1 cut(s)	222
AvaI	CYCGRG	4 cut(s)	488, 509, 551, 638
AvaII	GGWCC	4 cut(s)	505, 663, 679, 1118
AxyI	CCTNAGG	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	842
BamHI	GGATCC	3 cut(s)	628, 650, 1217
BanI	GGYRCC	2 cut(s)	272, 594
BanII	GRGCYC	1 cut(s)	842
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	4 cut(s)	415, 418, 483, 1173
BccI	CCATC	5 cut(s)	319, 575, 901, 1174, 1217
BceAI	ACGGC	7 cut(s)	260, 544, 604, 770, 874, 885, 913
BciT130I	CCWGG	3 cut(s)	217, 346, 782
BclI	TGATCA	1 cut(s)	196
BcnI	CCSGG	6 cut(s)	489, 490, 503, 599, 740, 842
BcoDI	GTCTC	4 cut(s)	256, 283, 311, 378
BfaI	CTAG	5 cut(s)	5, 326, 419, 495, 711
BfmI	CTRYAG	1 cut(s)	361
BfoI	RGCGCY	2 cut(s)	276, 598
BfuAI	ACCTGC	1 cut(s)	1225
BisI	GCNGC	8 cut(s)	429, 432, 472, 485, 499, 776, 1162, 1175
BlpI	GCTNAGC	1 cut(s)	467
BlsI	GCNGC	8 cut(s)	430, 433, 473, 486, 500, 777, 1163, 1176
Bme1390I	CCNGG	9 cut(s)	217, 346, 489, 490, 503, 599, 740, 782, 842
Bme18I	GGWCC	4 cut(s)	505, 663, 679, 1118
BmeT110I	CYCGRG	4 cut(s)	488, 509, 551, 638
BmgT120I	GGNCC	9 cut(s)	486, 505, 663, 679, 773, 838, 839, 982, 1118
BmrFI	CCNGG	9 cut(s)	217, 346, 489, 490, 503, 599, 740, 782, 842
BmrI	ACTGGG	2 cut(s)	103, 116
BmsI	GCATC	3 cut(s)	653, 782, 1034
BmuI	ACTGGG	2 cut(s)	103, 116
BoxI	GACNNNNGTC	2 cut(s)	881, 930
BpmI	CTGGAG	1 cut(s)	625
Bpu1102I	GCTNAGC	1 cut(s)	467
Bpu14I	TTCGAA	1 cut(s)	222
BpuMI	CCSGG	6 cut(s)	489, 490, 503, 599, 740, 842
BsaBI	GATNNNNATC	4 cut(s)	198, 201, 356, 627
BsaHI	GRCGYC	4 cut(s)	273, 408, 531, 595
BsaJI	CCNNGG	5 cut(s)	243, 488, 508, 683, 1147
BsaWI	WCCGGW	4 cut(s)	332, 631, 647, 801
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 1015, 1045
Bsc4I	CCNNNNNNNGG	8 cut(s)	25, 638, 660, 770, 771, 907, 996, 1210
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	98, 122
Bse21I	CCTNAGG	1 cut(s)	399
Bse8I	GATNNNNATC	4 cut(s)	198, 201, 356, 627
BseAI	TCCGGA	1 cut(s)	647
BseBI	CCWGG	3 cut(s)	217, 346, 782
BseDI	CCNNGG	5 cut(s)	243, 488, 508, 683, 1147
BseGI	GGATG	4 cut(s)	644, 797, 958, 1049
BseJI	GATNNNNATC	4 cut(s)	198, 201, 356, 627
BseLI	CCNNNNNNNGG	8 cut(s)	25, 638, 660, 770, 771, 907, 996, 1210
BseMII	CTCAG	1 cut(s)	481
BseNI	ACTGG	2 cut(s)	98, 122
BseRI	GAGGAG	2 cut(s)	244, 841
BseSI	GKGCMC	1 cut(s)	842
BseX3I	CGGCCG	2 cut(s)	499, 898
BseXI	GCAGC	4 cut(s)	415, 418, 483, 1173
Bsh1236I	CGCG	4 cut(s)	579, 685, 959, 961
Bsh1285I	CGRYCG	3 cut(s)	249, 502, 901
BshFI	GGCC	8 cut(s)	487, 501, 775, 785, 840, 861, 900, 984
BshNI	GGYRCC	2 cut(s)	272, 594
BsiEI	CGRYCG	3 cut(s)	249, 502, 901
BsiHKAI	GWGCWC	1 cut(s)	588
BsiHKCI	CYCGRG	4 cut(s)	488, 509, 551, 638
BsiWI	CGTACG	1 cut(s)	879
BslFI	GGGAC	7 cut(s)	110, 242, 533, 541, 676, 692, 713
BslI	CCNNNNNNNGG	8 cut(s)	25, 638, 660, 770, 771, 907, 996, 1210
BsmAI	GTCTC	4 cut(s)	256, 283, 311, 378
BsmBI	CGTCTC	2 cut(s)	256, 283
BsmFI	GGGAC	7 cut(s)	110, 242, 533, 541, 676, 692, 713
BsnI	GGCC	8 cut(s)	487, 501, 775, 785, 840, 861, 900, 984
BsoBI	CYCGRG	4 cut(s)	488, 509, 551, 638
Bsp119I	TTCGAA	1 cut(s)	222
Bsp120I	GGGCCC	1 cut(s)	838
Bsp1286I	GDGCHC	2 cut(s)	588, 842
Bsp13I	TCCGGA	1 cut(s)	647
Bsp143I	GATC	5 cut(s)	196, 547, 628, 650, 1217
Bsp1720I	GCTNAGC	1 cut(s)	467
BspANI	GGCC	8 cut(s)	487, 501, 775, 785, 840, 861, 900, 984
BspCNI	CTCAG	1 cut(s)	480
BspEI	TCCGGA	1 cut(s)	647
BspFNI	CGCG	4 cut(s)	579, 685, 959, 961
BspHI	TCATGA	1 cut(s)	388
BspMI	ACCTGC	1 cut(s)	1225
BspPI	GGATC	6 cut(s)	623, 636, 645, 658, 1212, 1225
BspT104I	TTCGAA	1 cut(s)	222
BspT107I	GGYRCC	2 cut(s)	272, 594
BsrBI	CCGCTC	1 cut(s)	778
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	98, 122
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	5 cut(s)	243, 488, 508, 683, 1147
BssMI	GATC	5 cut(s)	196, 547, 628, 650, 1217
BssNI	GRCGYC	4 cut(s)	273, 408, 531, 595
Bst2UI	CCWGG	3 cut(s)	217, 346, 782
Bst4CI	ACNGT	8 cut(s)	190, 247, 322, 704, 874, 1031, 1148, 1197
BstACI	GRCGYC	4 cut(s)	273, 408, 531, 595
BstAPI	GCANNNNNTGC	1 cut(s)	1167
BstBI	TTCGAA	1 cut(s)	222
BstC8I	GCNNGC	5 cut(s)	436, 482, 593, 838, 1172
BstDEI	CTNAG	2 cut(s)	399, 467
BstDSI	CCRYGG	3 cut(s)	243, 683, 1147
BstEII	GGTNACC	1 cut(s)	734
BstF5I	GGATG	4 cut(s)	644, 797, 958, 1049
BstFNI	CGCG	4 cut(s)	579, 685, 959, 961
BstH2I	RGCGCY	2 cut(s)	276, 598
BstHHI	GCGC	5 cut(s)	275, 579, 597, 797, 961
BstKTI	GATC	5 cut(s)	199, 550, 631, 653, 1220
BstMAI	GTCTC	4 cut(s)	256, 283, 311, 378
BstMBI	GATC	5 cut(s)	196, 547, 628, 650, 1217
BstMCI	CGRYCG	3 cut(s)	249, 502, 901
BstMWI	GCNNNNNNNGC	6 cut(s)	272, 477, 583, 592, 716, 1167
BstNI	CCWGG	3 cut(s)	217, 346, 782
BstNSI	RCATGY	1 cut(s)	438
BstPAI	GACNNNNGTC	2 cut(s)	881, 930
BstPI	GGTNACC	1 cut(s)	734
BstSCI	CCNGG	9 cut(s)	215, 344, 487, 488, 501, 597, 738, 780, 840
BstSFI	CTRYAG	1 cut(s)	361
BstSLI	GKGCMC	1 cut(s)	842
BstUI	CGCG	4 cut(s)	579, 685, 959, 961
BstV1I	GCAGC	4 cut(s)	415, 418, 483, 1173
BstX2I	RGATCY	3 cut(s)	628, 650, 1217
BstYI	RGATCY	3 cut(s)	628, 650, 1217
BstZI	CGGCCG	2 cut(s)	499, 898
Bsu36I	CCTNAGG	1 cut(s)	399
BsuRI	GGCC	8 cut(s)	487, 501, 775, 785, 840, 861, 900, 984
BtgI	CCRYGG	3 cut(s)	243, 683, 1147
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	4 cut(s)	644, 797, 958, 1049
BtsIMutI	CAGTG	1 cut(s)	1202
BveI	ACCTGC	1 cut(s)	1225
Cac8I	GCNNGC	5 cut(s)	436, 482, 593, 838, 1172
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	5 cut(s)	275, 579, 597, 797, 961
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	9 cut(s)	486, 505, 663, 679, 773, 838, 839, 982, 1118
Cfr42I	CCGCGG	1 cut(s)	686
Cfr9I	CCCGGG	1 cut(s)	488
CseI	GACGC	3 cut(s)	355, 520, 965
Csp6I	GTAC	5 cut(s)	10, 29, 544, 880, 1200
CviAII	CATG	5 cut(s)	89, 389, 435, 1109, 1207
CviQI	GTAC	5 cut(s)	10, 29, 544, 880, 1200
DdeI	CTNAG	2 cut(s)	399, 467
DinI	GGCGCC	2 cut(s)	274, 596
DpnI	GATC	5 cut(s)	198, 549, 630, 652, 1219
DpnII	GATC	5 cut(s)	196, 547, 628, 650, 1217
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
EaeI	YGGCCR	4 cut(s)	499, 783, 859, 898
EagI	CGGCCG	2 cut(s)	499, 898
EclXI	CGGCCG	2 cut(s)	499, 898
Eco24I	GRGCYC	1 cut(s)	842
Eco47I	GGWCC	4 cut(s)	505, 663, 679, 1118
Eco52I	CGGCCG	2 cut(s)	499, 898
Eco57I	CTGAAG	1 cut(s)	956
Eco81I	CCTNAGG	1 cut(s)	399
Eco88I	CYCGRG	4 cut(s)	488, 509, 551, 638
Eco91I	GGTNACC	1 cut(s)	734
EcoO109I	RGGNCCY	3 cut(s)	505, 663, 679
EcoO65I	GGTNACC	1 cut(s)	734
EcoRII	CCWGG	3 cut(s)	215, 344, 780
EcoT38I	GRGCYC	1 cut(s)	842
EgeI	GGCGCC	2 cut(s)	274, 596
EheI	GGCGCC	2 cut(s)	274, 596
Esp3I	CGTCTC	2 cut(s)	256, 283
FaeI	CATG	5 cut(s)	92, 392, 438, 1112, 1210
FaqI	GGGAC	7 cut(s)	110, 242, 533, 541, 676, 692, 713
FatI	CATG	5 cut(s)	88, 388, 434, 1108, 1206
FauI	CCCGC	8 cut(s)	466, 584, 689, 690, 829, 954, 1040, 1204
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	8 cut(s)	429, 432, 472, 485, 499, 776, 1162, 1175
FokI	GGATG	4 cut(s)	631, 804, 965, 1056
FriOI	GRGCYC	1 cut(s)	842
Fsp4HI	GCNGC	8 cut(s)	429, 432, 472, 485, 499, 776, 1162, 1175
FspBI	CTAG	5 cut(s)	5, 326, 419, 495, 711
GlaI	GCGC	5 cut(s)	274, 578, 596, 796, 960
GluI	GCNGC	8 cut(s)	429, 432, 472, 485, 499, 776, 1162, 1175
GsuI	CTGGAG	1 cut(s)	625
HaeII	RGCGCY	2 cut(s)	276, 598
HaeIII	GGCC	8 cut(s)	487, 501, 775, 785, 840, 861, 900, 984
HgaI	GACGC	3 cut(s)	355, 520, 965
HhaI	GCGC	5 cut(s)	275, 579, 597, 797, 961
Hin1I	GRCGYC	4 cut(s)	273, 408, 531, 595
Hin1II	CATG	5 cut(s)	92, 392, 438, 1112, 1210
Hin6I	GCGC	5 cut(s)	273, 577, 595, 795, 959
HinP1I	GCGC	5 cut(s)	273, 577, 595, 795, 959
HinfI	GANTC	5 cut(s)	357, 385, 554, 623, 728
HphI	GGTGA	2 cut(s)	1103, 1199
Hpy166II	GTNNAC	2 cut(s)	817, 1200
Hpy188III	TCNNGA	5 cut(s)	173, 389, 551, 604, 648
Hpy8I	GTNNAC	2 cut(s)	817, 1200
Hpy99I	CGWCG	7 cut(s)	194, 410, 413, 530, 536, 584, 791
HpyAV	CCTTC	3 cut(s)	677, 732, 775
HpyCH4III	ACNGT	8 cut(s)	190, 247, 322, 704, 874, 1031, 1148, 1197
HpyCH4IV	ACGT	5 cut(s)	408, 813, 878, 882, 974
HpyCH4V	TGCA	4 cut(s)	434, 453, 1108, 1234
HpyF10VI	GCNNNNNNNGC	6 cut(s)	272, 477, 583, 592, 716, 1167
HpyF3I	CTNAG	2 cut(s)	399, 467
HpySE526I	ACGT	5 cut(s)	408, 813, 878, 882, 974
Hsp92I	GRCGYC	4 cut(s)	273, 408, 531, 595
Hsp92II	CATG	5 cut(s)	92, 392, 438, 1112, 1210
HspAI	GCGC	5 cut(s)	273, 577, 595, 795, 959
KasI	GGCGCC	2 cut(s)	272, 594
KflI	GGGWCCC	2 cut(s)	663, 679
Kpn2I	TCCGGA	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	196
KspI	CCGCGG	1 cut(s)	686
Kzo9I	GATC	5 cut(s)	196, 547, 628, 650, 1217
LmnI	GCTCC	6 cut(s)	15, 606, 724, 783, 945, 999
Lsp1109I	GCAGC	4 cut(s)	415, 418, 483, 1173
LweI	GCATC	3 cut(s)	653, 782, 1034
MaeI	CTAG	5 cut(s)	5, 326, 419, 495, 711
MaeII	ACGT	5 cut(s)	408, 813, 878, 882, 974
MaeIII	GTNAC	3 cut(s)	535, 734, 874
MalI	GATC	5 cut(s)	198, 549, 630, 652, 1219
MbiI	CCGCTC	1 cut(s)	778
MboI	GATC	5 cut(s)	196, 547, 628, 650, 1217
MboII	GAAGA	5 cut(s)	197, 361, 562, 949, 1263
MflI	RGATCY	3 cut(s)	628, 650, 1217
MhlI	GDGCHC	2 cut(s)	588, 842
MluCI	AATT	1 cut(s)	966
Mly113I	GGCGCC	2 cut(s)	273, 595
MlyI	GAGTC	2 cut(s)	394, 563
MmeI	TCCRAC	3 cut(s)	306, 769, 1032
MroI	TCCGGA	1 cut(s)	647
MseI	TTAA	3 cut(s)	59, 84, 894
MspA1I	CMGCKG	2 cut(s)	480, 685
MspR9I	CCNGG	9 cut(s)	217, 346, 489, 490, 503, 599, 740, 782, 842
MvaI	CCWGG	3 cut(s)	217, 346, 782
MvnI	CGCG	4 cut(s)	579, 685, 959, 961
MwoI	GCNNNNNNNGC	6 cut(s)	272, 477, 583, 592, 716, 1167
NarI	GGCGCC	2 cut(s)	273, 595
NciI	CCSGG	6 cut(s)	489, 490, 503, 599, 740, 842
NdeII	GATC	5 cut(s)	196, 547, 628, 650, 1217
NlaIII	CATG	5 cut(s)	92, 392, 438, 1112, 1210
NmeAIII	GCCGAG	1 cut(s)	408
NmuCI	GTSAC	2 cut(s)	535, 874
NspI	RCATGY	1 cut(s)	438
NspV	TTCGAA	1 cut(s)	222
PaeI	GCATGC	1 cut(s)	438
PaeR7I	CTCGAG	1 cut(s)	551
PagI	TCATGA	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	4 cut(s)	297, 531, 579, 870
PfeI	GAWTC	3 cut(s)	357, 623, 728
Pfl23II	CGTACG	1 cut(s)	879
PflFI	GACNNNGTC	2 cut(s)	407, 530
PkrI	GCNGC	8 cut(s)	430, 433, 473, 486, 500, 777, 1163, 1176
PleI	GAGTC	2 cut(s)	393, 562
PluTI	GGCGCC	2 cut(s)	276, 598
PpsI	GAGTC	2 cut(s)	393, 562
PpuMI	RGGWCCY	3 cut(s)	505, 663, 679
PshAI	GACNNNNGTC	2 cut(s)	881, 930
Psp5II	RGGWCCY	3 cut(s)	505, 663, 679
Psp6I	CCWGG	3 cut(s)	215, 344, 780
PspEI	GGTNACC	1 cut(s)	734
PspGI	CCWGG	3 cut(s)	215, 344, 780
PspLI	CGTACG	1 cut(s)	879
PspOMI	GGGCCC	1 cut(s)	838
PspPI	GGNCC	9 cut(s)	486, 505, 663, 679, 773, 838, 839, 982, 1118
PspPPI	RGGWCCY	3 cut(s)	505, 663, 679
PsrI	GAACNNNNNNTAC	2 cut(s)	872, 904
PsuI	RGATCY	3 cut(s)	628, 650, 1217
PsyI	GACNNNGTC	2 cut(s)	407, 530
RsaI	GTAC	5 cut(s)	11, 30, 545, 881, 1201
RsaNI	GTAC	5 cut(s)	10, 29, 544, 880, 1200
SacII	CCGCGG	1 cut(s)	686
SaqAI	TTAA	3 cut(s)	59, 84, 894
SatI	GCNGC	8 cut(s)	429, 432, 472, 485, 499, 776, 1162, 1175
Sau3AI	GATC	5 cut(s)	196, 547, 628, 650, 1217
Sau96I	GGNCC	9 cut(s)	486, 505, 663, 679, 773, 838, 839, 982, 1118
SchI	GAGTC	2 cut(s)	394, 563
ScrFI	CCNGG	9 cut(s)	217, 346, 489, 490, 503, 599, 740, 782, 842
SduI	GDGCHC	2 cut(s)	588, 842
SfaNI	GCATC	3 cut(s)	653, 782, 1034
SfcI	CTRYAG	1 cut(s)	361
SfoI	GGCGCC	2 cut(s)	274, 596
Sfr274I	CTCGAG	1 cut(s)	551
Sfr303I	CCGCGG	1 cut(s)	686
SfuI	TTCGAA	1 cut(s)	222
SgrAI	CRCCGGYG	1 cut(s)	269
SgrBI	CCGCGG	1 cut(s)	686
SinI	GGWCC	4 cut(s)	505, 663, 679, 1118
SlaI	CTCGAG	1 cut(s)	551
SmaI	CCCGGG	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SphI	GCATGC	1 cut(s)	438
Sse9I	AATT	1 cut(s)	966
SspDI	GGCGCC	2 cut(s)	272, 594
SspMI	CTAG	5 cut(s)	5, 326, 419, 495, 711
StyD4I	CCNGG	9 cut(s)	215, 344, 487, 488, 501, 597, 738, 780, 840
TaaI	ACNGT	8 cut(s)	190, 247, 322, 704, 874, 1031, 1148, 1197
TaiI	ACGT	5 cut(s)	411, 816, 881, 885, 977
TaqI	TCGA	8 cut(s)	192, 222, 300, 306, 552, 573, 612, 905
TasI	AATT	1 cut(s)	966
TauI	GCSGC	4 cut(s)	487, 501, 778, 1177
TfiI	GAWTC	3 cut(s)	357, 623, 728
Tru1I	TTAA	3 cut(s)	59, 84, 894
Tru9I	TTAA	3 cut(s)	59, 84, 894
TscAI	CASTG	1 cut(s)	1202
TseFI	GTSAC	2 cut(s)	535, 874
TseI	GCWGC	4 cut(s)	428, 431, 471, 1161
Tsp45I	GTSAC	2 cut(s)	535, 874
TspDTI	ATGAA	3 cut(s)	116, 197, 405
TspGWI	ACGGA	1 cut(s)	554
TspMI	CCCGGG	1 cut(s)	488
TspRI	CASTG	1 cut(s)	1202
Tth111I	GACNNNGTC	2 cut(s)	407, 530
VpaK11BI	GGWCC	4 cut(s)	505, 663, 679, 1118
XapI	RAATTY	1 cut(s)	966
XceI	RCATGY	1 cut(s)	438
XhoI	CTCGAG	1 cut(s)	551
XmaI	CCCGGG	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	816
XspI	CTAG	5 cut(s)	5, 326, 419, 495, 711
ZraI	GACGTC	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.