Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0014091

Physical Location & Seq

Genomic Coordinates Forward (+)

64585744 .. 64587593

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G036760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGCTAGGGTACGGGAGCCTTTGGTTGGTACAGAAACACCCCCAATGCCTCCAAAACTTAACATCTCCACCACCACCGCCCCTTAACCATGACTGGGCGATGAACCCACCATTCCATTTCCCAGTCCCACAACCATTCCAAAACCAGAACCAAACCCAAAACCCAGACCAACAACAAGTTCAAGATAACAAACCCACCGCCGATGATCATCATCTTCATAAGTCCAGGTTCGAATGGGACTTCACTCTCTCCACGGTCGTCTCCTCCCCCACCGCCACCAGCTCCGTCTCCAACACTCTCGGAGTAATCGAGTTCGACCCATCGGAAACTGTTCTAGCCACCGGAGGCATAGCCAGGAAGATTAGAATCTACAGCGTCAAGTCTCTCCTGCCGAGTCATGAACAGCCTAAGGACGACGTCGTTTCGCTAGACCACGCTGCTGCATGCGACTATTACATTTGCACCCCCGCCAAGCTCAGCAGCCTCCGCTGGCGGCCCGGGTCGAGCGGCCGGGTCCTCGGGTCTGGGGACTACGACGGCGTCGTCACGGAGTACGATCTCGAGTCCCACCTCCCCATCTTCGAGCGCGACGAGCACGGCGGGCGCCGCGTCTGGAGCCTCGACTACTCGGATTCGGATCCGGTTCTCGGGGCGTCCGGATCCGACGACGGGACCCTTCAAATGTGGGACCCGCGGTGCGAGGGCGGGGACTGTGTGGCTAGAGTGGCTCCTTCCGAATCGGGTAACCCGGTCTGTTGCGTGGAGTTCAATCCCTTCGGTGGGCCTCTCCTGGCCGTCGGATGCGCTGACCGGAAAGCCTACGTCTACGATGTGAGGAAAATGGCGGGCCCGGTTTTGAGTTTTGACGGCCACGATAAGACCGTGACGTACGTCAGGTTCCTTAACGGCCGTTCGATGGTGTCAGCCGGAACGGACGGGTGTCTGAAGATGTGGAGCGTGGATGACGCGCGGGAAATTCGGACGTATTCGGGCCACACCAACAATCGGAGCTTTGTCGGGTTGTCGGTTTGGAGAAACGGTGGGCTTCTCGGGTGCGGGTCGGAAAATAATCAGGTATTTGTGTATGATGTTAGGTGGGGTGAGCTGTTTGGGTGCATGGGTTTGGACCAATGGGAAGCGAGGGTTGTGATGACCGTGGGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000152 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009640 GO:0009641 GO:0009642 GO:0009646 GO:0009647 GO:0009648 GO:0009649 GO:0009657 GO:0009658 GO:0009791 GO:0009812 GO:0009987 GO:0010114 GO:0010119 GO:0010218 GO:0010224 GO:0010228 GO:0016043 GO:0016567 GO:0016604 GO:0016740 GO:0019538 GO:0019787 GO:0022414 GO:0031461 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0042440 GO:0042752 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043393 GO:0043412 GO:0043496 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046283 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051098 GO:0051716 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko04712 map04115 map04120 map04712

Pfam Domains

Protein Families

WD40

Protein Analysis

388

Amino Acids

42.78

Weight (kDa)

5.25

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	98 - 372	7.2e-23	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	157 - 295	2.2e-10	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	158 - 367	2.9e-18	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	169 - 337	5.6e-13	TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	170 - 371	4.8e-06	MABP1/WDR62 second WD40 domain
Beta-prop_EML_2	PF23414	176 - 303	1.9e-08	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_EML	PF23409	201 - 365	2.6e-06	Echinoderm microtubule-associated protein first beta-propeller
WD40_Gbeta	PF25391	212 - 366	2.8e-06	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	219 - 333	1.1e-11	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	249 - 338	8.7e-08	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	250 - 364	4.8e-13	WDR3 first beta-propeller domain
Beta-prop_DCAF4	PF23761	261 - 351	8.8e-07	DDB1- and CUL4-associated factor 4 beta-propeller domain
WD40_CDC20-Fz	PF24807	289 - 369	5.3e-07	CDC20/Fizzy WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23730
fragaria_vesca	FvH4_7g29370
malus_domestica	MD01G1199700.v1.1 MD07G1267700.v1.1
prunus_persica	Prupe.2G293400_v2.0.a1
pyrus_communis	pycom01g20980 pycom07g24530
rosa_chinensis	RchiOBHm_Chr1g0377161
rosa_laevigata	RLG00000026540
rosa_multiflora	Rmu_ssc0000155.1_g000016
rosa_roxburghii	Rroxscaffold_4G00281420
rosa_rugosa	Rorug01G0401700
rosa_samantha	Rh1AG419100 Rh1BG378200 Rh1CG392200 Rh1DG408900
rosa_wichuraiana	Rw1G036760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	542
AatII	GACGTC	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	603
AccBSI	CCGCTC	1 cut(s)	507
AccI	GTMKAC	1 cut(s)	825
AccII	CGCG	5 cut(s)	588, 609, 694, 968, 970
AccIII	TCCGGA	1 cut(s)	656
AclWI	GGATC	4 cut(s)	632, 645, 654, 667
AcoI	YGGCCR	4 cut(s)	508, 792, 868, 907
AcsI	RAATTY	1 cut(s)	975
AcuI	CTGAAG	1 cut(s)	965
AcyI	GRCGYC	4 cut(s)	417, 540, 604, 653
AfaI	GTAC	4 cut(s)	11, 30, 554, 890
AfiI	CCNNNNNNNGG	8 cut(s)	25, 94, 647, 669, 779, 780, 916, 1005
AgsI	TTSAA	3 cut(s)	182, 680, 769
AjnI	CCWGG	3 cut(s)	224, 353, 789
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AluBI	AGCT	4 cut(s)	282, 475, 1011, 1105
AluI	AGCT	4 cut(s)	282, 475, 1011, 1105
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	3 cut(s)	265, 292, 387
AlwI	GGATC	4 cut(s)	632, 645, 654, 667
Ama87I	CYCGRG	5 cut(s)	497, 518, 560, 647, 1049
Aor13HI	TCCGGA	1 cut(s)	656
AoxI	GGCC	8 cut(s)	494, 508, 782, 792, 847, 868, 907, 991
ApaI	GGGCCC	1 cut(s)	851
ApeKI	GCWGC	3 cut(s)	437, 440, 480
ApoI	RAATTY	1 cut(s)	975
ArsI	GACNNNNNNTTYG	1 cut(s)	1144
Asp700I	GAANNNNTTC	1 cut(s)	330
AspLEI	GCGC	4 cut(s)	588, 606, 806, 970
AspS9I	GGNCC	9 cut(s)	495, 514, 672, 688, 782, 847, 848, 991, 1126
AsuC2I	CCSGG	5 cut(s)	498, 499, 512, 749, 851
AsuHPI	GGTGA	1 cut(s)	1112
AsuII	TTCGAA	1 cut(s)	231
AvaI	CYCGRG	5 cut(s)	497, 518, 560, 647, 1049
AvaII	GGWCC	4 cut(s)	514, 672, 688, 1126
AxyI	CCTNAGG	1 cut(s)	408
BaeGI	GKGCMC	1 cut(s)	851
BamHI	GGATCC	2 cut(s)	637, 659
BanI	GGYRCC	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	851
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	3 cut(s)	424, 427, 492
BccI	CCATC	3 cut(s)	328, 584, 910
BceAI	ACGGC	6 cut(s)	553, 613, 779, 883, 894, 922
BciT130I	CCWGG	3 cut(s)	226, 355, 791
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	5 cut(s)	498, 499, 512, 749, 851
BcoDI	GTCTC	3 cut(s)	265, 292, 387
BfaI	CTAG	4 cut(s)	5, 335, 428, 720
BfmI	CTRYAG	1 cut(s)	370
BfoI	RGCGCY	1 cut(s)	607
BisI	GCNGC	6 cut(s)	438, 441, 481, 494, 508, 607
BlpI	GCTNAGC	1 cut(s)	476
BlsI	GCNGC	6 cut(s)	439, 442, 482, 495, 509, 608
Bme1390I	CCNGG	8 cut(s)	226, 355, 498, 499, 512, 749, 791, 851
Bme18I	GGWCC	4 cut(s)	514, 672, 688, 1126
BmeT110I	CYCGRG	5 cut(s)	497, 518, 560, 647, 1049
BmgT120I	GGNCC	9 cut(s)	495, 514, 672, 688, 782, 847, 848, 991, 1126
BmrFI	CCNGG	8 cut(s)	226, 355, 498, 499, 512, 749, 791, 851
BmrI	ACTGGG	2 cut(s)	103, 116
BmsI	GCATC	1 cut(s)	791
BmuI	ACTGGG	2 cut(s)	103, 116
BoxI	GACNNNNGTC	2 cut(s)	890, 939
BpmI	CTGGAG	1 cut(s)	634
Bpu1102I	GCTNAGC	1 cut(s)	476
Bpu14I	TTCGAA	1 cut(s)	231
BpuMI	CCSGG	5 cut(s)	498, 499, 512, 749, 851
BsaBI	GATNNNNATC	4 cut(s)	207, 210, 365, 636
BsaHI	GRCGYC	4 cut(s)	417, 540, 604, 653
BsaJI	CCNNGG	5 cut(s)	252, 497, 517, 692, 1155
BsaWI	WCCGGW	4 cut(s)	341, 640, 656, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	1024, 1054
Bsc4I	CCNNNNNNNGG	8 cut(s)	25, 94, 647, 669, 779, 780, 916, 1005
Bse1I	ACTGG	2 cut(s)	98, 122
Bse21I	CCTNAGG	1 cut(s)	408
Bse8I	GATNNNNATC	4 cut(s)	207, 210, 365, 636
BseAI	TCCGGA	1 cut(s)	656
BseBI	CCWGG	3 cut(s)	226, 355, 791
BseDI	CCNNGG	5 cut(s)	252, 497, 517, 692, 1155
BseGI	GGATG	2 cut(s)	806, 967
BseJI	GATNNNNATC	4 cut(s)	207, 210, 365, 636
BseLI	CCNNNNNNNGG	8 cut(s)	25, 94, 647, 669, 779, 780, 916, 1005
BseMII	CTCAG	1 cut(s)	490
BseNI	ACTGG	2 cut(s)	98, 122
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	851
BseX3I	CGGCCG	2 cut(s)	508, 907
BseXI	GCAGC	3 cut(s)	424, 427, 492
Bsh1236I	CGCG	5 cut(s)	588, 609, 694, 968, 970
Bsh1285I	CGRYCG	3 cut(s)	258, 511, 910
BshFI	GGCC	8 cut(s)	496, 510, 784, 794, 849, 870, 909, 993
BshNI	GGYRCC	1 cut(s)	603
BsiEI	CGRYCG	3 cut(s)	258, 511, 910
BsiHKAI	GWGCWC	1 cut(s)	597
BsiHKCI	CYCGRG	5 cut(s)	497, 518, 560, 647, 1049
BsiSI	CCGG	9 cut(s)	342, 498, 511, 641, 657, 749, 811, 851, 927
BsiWI	CGTACG	1 cut(s)	888
BslFI	GGGAC	7 cut(s)	110, 251, 542, 550, 685, 701, 722
BslI	CCNNNNNNNGG	8 cut(s)	25, 94, 647, 669, 779, 780, 916, 1005
BsmAI	GTCTC	3 cut(s)	265, 292, 387
BsmBI	CGTCTC	2 cut(s)	265, 292
BsmFI	GGGAC	7 cut(s)	110, 251, 542, 550, 685, 701, 722
BsnI	GGCC	8 cut(s)	496, 510, 784, 794, 849, 870, 909, 993
BsoBI	CYCGRG	5 cut(s)	497, 518, 560, 647, 1049
Bsp119I	TTCGAA	1 cut(s)	231
Bsp120I	GGGCCC	1 cut(s)	847
Bsp1286I	GDGCHC	2 cut(s)	597, 851
Bsp13I	TCCGGA	1 cut(s)	656
Bsp143I	GATC	4 cut(s)	205, 556, 637, 659
Bsp1720I	GCTNAGC	1 cut(s)	476
BspANI	GGCC	8 cut(s)	496, 510, 784, 794, 849, 870, 909, 993
BspCNI	CTCAG	1 cut(s)	489
BspEI	TCCGGA	1 cut(s)	656
BspFNI	CGCG	5 cut(s)	588, 609, 694, 968, 970
BspHI	TCATGA	1 cut(s)	397
BspPI	GGATC	4 cut(s)	632, 645, 654, 667
BspT104I	TTCGAA	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	603
BsrBI	CCGCTC	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	98, 122
BssECI	CCNNGG	5 cut(s)	252, 497, 517, 692, 1155
BssMI	GATC	4 cut(s)	205, 556, 637, 659
BssNI	GRCGYC	4 cut(s)	417, 540, 604, 653
Bst2UI	CCWGG	3 cut(s)	226, 355, 791
Bst4CI	ACNGT	6 cut(s)	256, 331, 713, 883, 1040, 1156
BstACI	GRCGYC	4 cut(s)	417, 540, 604, 653
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	4 cut(s)	445, 491, 602, 847
BstDEI	CTNAG	2 cut(s)	408, 476
BstDSI	CCRYGG	3 cut(s)	252, 692, 1155
BstEII	GGTNACC	1 cut(s)	743
BstF5I	GGATG	2 cut(s)	806, 967
BstFNI	CGCG	5 cut(s)	588, 609, 694, 968, 970
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	4 cut(s)	588, 606, 806, 970
BstKTI	GATC	4 cut(s)	208, 559, 640, 662
BstMAI	GTCTC	3 cut(s)	265, 292, 387
BstMBI	GATC	4 cut(s)	205, 556, 637, 659
BstMCI	CGRYCG	3 cut(s)	258, 511, 910
BstMWI	GCNNNNNNNGC	6 cut(s)	486, 592, 601, 606, 615, 725
BstNI	CCWGG	3 cut(s)	226, 355, 791
BstNSI	RCATGY	1 cut(s)	447
BstPAI	GACNNNNGTC	2 cut(s)	890, 939
BstPI	GGTNACC	1 cut(s)	743
BstSCI	CCNGG	8 cut(s)	224, 353, 496, 497, 510, 747, 789, 849
BstSFI	CTRYAG	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	851
BstUI	CGCG	5 cut(s)	588, 609, 694, 968, 970
BstV1I	GCAGC	3 cut(s)	424, 427, 492
BstX2I	RGATCY	2 cut(s)	637, 659
BstYI	RGATCY	2 cut(s)	637, 659
BstZI	CGGCCG	2 cut(s)	508, 907
Bsu36I	CCTNAGG	1 cut(s)	408
BsuRI	GGCC	8 cut(s)	496, 510, 784, 794, 849, 870, 909, 993
BtgI	CCRYGG	3 cut(s)	252, 692, 1155
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	806, 967
Cac8I	GCNNGC	4 cut(s)	445, 491, 602, 847
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	4 cut(s)	588, 606, 806, 970
Cfr13I	GGNCC	9 cut(s)	495, 514, 672, 688, 782, 847, 848, 991, 1126
Cfr42I	CCGCGG	1 cut(s)	695
Cfr9I	CCCGGG	1 cut(s)	497
CseI	GACGC	5 cut(s)	364, 529, 598, 642, 974
Csp6I	GTAC	4 cut(s)	10, 29, 553, 889
CviAII	CATG	4 cut(s)	89, 398, 444, 1117
CviQI	GTAC	4 cut(s)	10, 29, 553, 889
DdeI	CTNAG	2 cut(s)	408, 476
DinI	GGCGCC	1 cut(s)	605
DpnI	GATC	4 cut(s)	207, 558, 639, 661
DpnII	GATC	4 cut(s)	205, 556, 637, 659
DrdI	GACNNNNNNGTC	1 cut(s)	542
DseDI	GACNNNNNNGTC	1 cut(s)	542
EaeI	YGGCCR	4 cut(s)	508, 792, 868, 907
EagI	CGGCCG	2 cut(s)	508, 907
EclXI	CGGCCG	2 cut(s)	508, 907
Eco24I	GRGCYC	1 cut(s)	851
Eco47I	GGWCC	4 cut(s)	514, 672, 688, 1126
Eco52I	CGGCCG	2 cut(s)	508, 907
Eco57I	CTGAAG	1 cut(s)	965
Eco81I	CCTNAGG	1 cut(s)	408
Eco88I	CYCGRG	5 cut(s)	497, 518, 560, 647, 1049
Eco91I	GGTNACC	1 cut(s)	743
EcoO109I	RGGNCCY	3 cut(s)	514, 672, 688
EcoO65I	GGTNACC	1 cut(s)	743
EcoRII	CCWGG	3 cut(s)	224, 353, 789
EcoT38I	GRGCYC	1 cut(s)	851
EgeI	GGCGCC	1 cut(s)	605
EheI	GGCGCC	1 cut(s)	605
Esp3I	CGTCTC	2 cut(s)	265, 292
FaeI	CATG	4 cut(s)	92, 401, 447, 1120
FaiI	YATR	7 cut(s)	90, 219, 350, 399, 445, 1086, 1118
FaqI	GGGAC	7 cut(s)	110, 251, 542, 550, 685, 701, 722
FatI	CATG	4 cut(s)	88, 397, 443, 1116
FauI	CCCGC	7 cut(s)	475, 593, 698, 699, 838, 963, 1049
FbaI	TGATCA	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	825
Fnu4HI	GCNGC	6 cut(s)	438, 441, 481, 494, 508, 607
FokI	GGATG	2 cut(s)	813, 974
FriOI	GRGCYC	1 cut(s)	851
Fsp4HI	GCNGC	6 cut(s)	438, 441, 481, 494, 508, 607
FspBI	CTAG	4 cut(s)	5, 335, 428, 720
GlaI	GCGC	4 cut(s)	587, 605, 805, 969
GluI	GCNGC	6 cut(s)	438, 441, 481, 494, 508, 607
GsuI	CTGGAG	1 cut(s)	634
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	8 cut(s)	496, 510, 784, 794, 849, 870, 909, 993
HapII	CCGG	9 cut(s)	342, 498, 511, 641, 657, 749, 811, 851, 927
HgaI	GACGC	5 cut(s)	364, 529, 598, 642, 974
HhaI	GCGC	4 cut(s)	588, 606, 806, 970
Hin1I	GRCGYC	4 cut(s)	417, 540, 604, 653
Hin1II	CATG	4 cut(s)	92, 401, 447, 1120
Hin6I	GCGC	4 cut(s)	586, 604, 804, 968
HinP1I	GCGC	4 cut(s)	586, 604, 804, 968
HinfI	GANTC	5 cut(s)	366, 394, 563, 632, 737
HpaII	CCGG	9 cut(s)	342, 498, 511, 641, 657, 749, 811, 851, 927
HphI	GGTGA	1 cut(s)	1112
Hpy166II	GTNNAC	1 cut(s)	826
Hpy188III	TCNNGA	5 cut(s)	182, 398, 560, 613, 657
Hpy8I	GTNNAC	1 cut(s)	826
Hpy99I	CGWCG	8 cut(s)	419, 422, 539, 545, 593, 668, 671, 800
HpyAV	CCTTC	3 cut(s)	686, 741, 784
HpyCH4III	ACNGT	6 cut(s)	256, 331, 713, 883, 1040, 1156
HpyCH4IV	ACGT	5 cut(s)	417, 822, 887, 891, 983
HpyCH4V	TGCA	3 cut(s)	443, 462, 1116
HpyF10VI	GCNNNNNNNGC	6 cut(s)	486, 592, 601, 606, 615, 725
HpyF3I	CTNAG	2 cut(s)	408, 476
HpySE526I	ACGT	5 cut(s)	417, 822, 887, 891, 983
Hsp92I	GRCGYC	4 cut(s)	417, 540, 604, 653
Hsp92II	CATG	4 cut(s)	92, 401, 447, 1120
HspAI	GCGC	4 cut(s)	586, 604, 804, 968
KasI	GGCGCC	1 cut(s)	603
KflI	GGGWCCC	2 cut(s)	672, 688
Kpn2I	TCCGGA	1 cut(s)	656
Ksp22I	TGATCA	1 cut(s)	205
KspI	CCGCGG	1 cut(s)	695
Kzo9I	GATC	4 cut(s)	205, 556, 637, 659
LmnI	GCTCC	6 cut(s)	15, 287, 615, 733, 954, 1008
Lsp1109I	GCAGC	3 cut(s)	424, 427, 492
LweI	GCATC	1 cut(s)	791
MaeI	CTAG	4 cut(s)	5, 335, 428, 720
MaeII	ACGT	5 cut(s)	417, 822, 887, 891, 983
MaeIII	GTNAC	3 cut(s)	544, 743, 883
MalI	GATC	4 cut(s)	207, 558, 639, 661
MbiI	CCGCTC	1 cut(s)	507
MboI	GATC	4 cut(s)	205, 556, 637, 659
MboII	GAAGA	4 cut(s)	206, 370, 571, 958
MflI	RGATCY	2 cut(s)	637, 659
MhlI	GDGCHC	2 cut(s)	597, 851
MluCI	AATT	1 cut(s)	975
Mly113I	GGCGCC	1 cut(s)	604
MlyI	GAGTC	2 cut(s)	403, 572
MmeI	TCCRAC	4 cut(s)	315, 687, 778, 1041
MroI	TCCGGA	1 cut(s)	656
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	3 cut(s)	59, 84, 903
MspA1I	CMGCKG	2 cut(s)	489, 694
MspI	CCGG	9 cut(s)	342, 498, 511, 641, 657, 749, 811, 851, 927
MspR9I	CCNGG	8 cut(s)	226, 355, 498, 499, 512, 749, 791, 851
MvaI	CCWGG	3 cut(s)	226, 355, 791
MvnI	CGCG	5 cut(s)	588, 609, 694, 968, 970
MwoI	GCNNNNNNNGC	6 cut(s)	486, 592, 601, 606, 615, 725
NarI	GGCGCC	1 cut(s)	604
NciI	CCSGG	5 cut(s)	498, 499, 512, 749, 851
NdeII	GATC	4 cut(s)	205, 556, 637, 659
NlaIII	CATG	4 cut(s)	92, 401, 447, 1120
NmeAIII	GCCGAG	1 cut(s)	417
NmuCI	GTSAC	2 cut(s)	544, 883
NspI	RCATGY	1 cut(s)	447
NspV	TTCGAA	1 cut(s)	231
PaeI	GCATGC	1 cut(s)	447
PaeR7I	CTCGAG	1 cut(s)	560
PagI	TCATGA	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	4 cut(s)	306, 540, 588, 879
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	3 cut(s)	366, 632, 737
Pfl23II	CGTACG	1 cut(s)	888
PflFI	GACNNNGTC	2 cut(s)	416, 539
PkrI	GCNGC	6 cut(s)	439, 442, 482, 495, 509, 608
PleI	GAGTC	2 cut(s)	402, 571
PluTI	GGCGCC	1 cut(s)	607
PpsI	GAGTC	2 cut(s)	402, 571
PpuMI	RGGWCCY	3 cut(s)	514, 672, 688
PshAI	GACNNNNGTC	2 cut(s)	890, 939
Psp5II	RGGWCCY	3 cut(s)	514, 672, 688
Psp6I	CCWGG	3 cut(s)	224, 353, 789
PspEI	GGTNACC	1 cut(s)	743
PspGI	CCWGG	3 cut(s)	224, 353, 789
PspLI	CGTACG	1 cut(s)	888
PspOMI	GGGCCC	1 cut(s)	847
PspPI	GGNCC	9 cut(s)	495, 514, 672, 688, 782, 847, 848, 991, 1126
PspPPI	RGGWCCY	3 cut(s)	514, 672, 688
PsrI	GAACNNNNNNTAC	2 cut(s)	881, 913
PsuI	RGATCY	2 cut(s)	637, 659
PsyI	GACNNNGTC	2 cut(s)	416, 539
RsaI	GTAC	4 cut(s)	11, 30, 554, 890
RsaNI	GTAC	4 cut(s)	10, 29, 553, 889
SacII	CCGCGG	1 cut(s)	695
SaqAI	TTAA	3 cut(s)	59, 84, 903
SatI	GCNGC	6 cut(s)	438, 441, 481, 494, 508, 607
Sau3AI	GATC	4 cut(s)	205, 556, 637, 659
Sau96I	GGNCC	9 cut(s)	495, 514, 672, 688, 782, 847, 848, 991, 1126
SchI	GAGTC	2 cut(s)	403, 572
ScrFI	CCNGG	8 cut(s)	226, 355, 498, 499, 512, 749, 791, 851
SduI	GDGCHC	2 cut(s)	597, 851
SfaNI	GCATC	1 cut(s)	791
SfcI	CTRYAG	1 cut(s)	370
SfoI	GGCGCC	1 cut(s)	605
Sfr274I	CTCGAG	1 cut(s)	560
Sfr303I	CCGCGG	1 cut(s)	695
SfuI	TTCGAA	1 cut(s)	231
SgrBI	CCGCGG	1 cut(s)	695
SinI	GGWCC	4 cut(s)	514, 672, 688, 1126
SlaI	CTCGAG	1 cut(s)	560
SmaI	CCCGGG	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SphI	GCATGC	1 cut(s)	447
Sse9I	AATT	1 cut(s)	975
SspDI	GGCGCC	1 cut(s)	603
SspMI	CTAG	4 cut(s)	5, 335, 428, 720
StyD4I	CCNGG	8 cut(s)	224, 353, 496, 497, 510, 747, 789, 849
TaaI	ACNGT	6 cut(s)	256, 331, 713, 883, 1040, 1156
TaiI	ACGT	5 cut(s)	420, 825, 890, 894, 986
TaqI	TCGA	8 cut(s)	231, 309, 315, 503, 561, 582, 621, 914
TasI	AATT	1 cut(s)	975
TauI	GCSGC	3 cut(s)	496, 510, 609
TfiI	GAWTC	3 cut(s)	366, 632, 737
Tru1I	TTAA	3 cut(s)	59, 84, 903
Tru9I	TTAA	3 cut(s)	59, 84, 903
TseFI	GTSAC	2 cut(s)	544, 883
TseI	GCWGC	3 cut(s)	437, 440, 480
Tsp45I	GTSAC	2 cut(s)	544, 883
TspDTI	ATGAA	3 cut(s)	116, 206, 414
TspGWI	ACGGA	3 cut(s)	274, 563, 947
TspMI	CCCGGG	1 cut(s)	497
Tth111I	GACNNNGTC	2 cut(s)	416, 539
VpaK11BI	GGWCC	4 cut(s)	514, 672, 688, 1126
XapI	RAATTY	1 cut(s)	975
XceI	RCATGY	1 cut(s)	447
XhoI	CTCGAG	1 cut(s)	560
XmaI	CCCGGG	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	825
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	4 cut(s)	5, 335, 428, 720
ZraI	GACGTC	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.