Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008217

Physical Location & Seq

Genomic Coordinates Reverse (-)

8238428 .. 8243443

Gene Structure 5016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGCTGCTCTGTATCGAAGAAGAAGAAGAAGAATGCAATGCGACCACCGGGATATGAGGATCCCGAGCTTCTTGCATCCGTCACGCCATTCACGGTAGAAGAAGTGGAGGCTTTGTATGAACTGTTCAAGAAGCTAAGCAGCTCAATTATCGATGATGGTCTTATTCATAAGGAAGAATTTCAGCTGGCTTTATTCAGAAATAGGAACCGGAGGAATCTCTTCGCTGATCGGATATTTGATGTATTTGATGTGAAGCGAAATGGAGTGATCGAGTTTGGTGAATTTGTCCGGTCCTTAGGTGTCTTCCATCCAAGCGCGCCGGTCCATGAAAAAGTCAAATTTGCTTTCAAGTTGTACGATTTACGACAAACTGGATTCATCGAGCGAGAAGAATTGAAAGAGATGGTAGTAGCGCTTCTTCACGAATCCGAACTAGTTCTTTCCGAAGATATGATTGAAGTAATGGTGGATAAGGCTTTCGTGCAAGCAGACCGCAAAAACGACGGAAAAATCGATATAGATGAATGGAAAGACTTTGTATCCTTGAATCCATCGCTCATCAAGAACATGACTTTGCCATATCTAAAGGACATAAATAGGACGTTTCCAAGTTTCGTTTCATCTTGTGAAGAGGAAGAAATGGAATTGCAAAACGTATCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0004723 GO:0005488 GO:0005509 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005955 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006875 GO:0006950 GO:0006970 GO:0006971 GO:0008150 GO:0008152 GO:0008287 GO:0009593 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0019725 GO:0030003 GO:0030004 GO:0030007 GO:0032991 GO:0036211 GO:0042221 GO:0042539 GO:0042578 GO:0042592 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0050896 GO:0051592 GO:0051606 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

222

Amino Acids

25.69

Weight (kDa)

5.13

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	111 - 180	4.6e-09	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24270 AT5G24270 AT5G24270 AT5G24270 AT5G24270
fragaria_vesca	FvH4_7g31620
malus_domestica	MD01G1219100.v1.1 MD07G1288800.v1.1
prunus_persica	Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1
pyrus_communis	pycom01g22890 pycom07g26140
rosa_chinensis	RchiOBHm_Chr1g0380691
rosa_multiflora	Rmu_sc0001637.1_g000008
rosa_rugosa	Rorug01G0423500 Rorug01G0423600
rosa_samantha	Rh1AG447800 Rh1BG403200 Rh1DG433500 Rh7CG247200
rosa_wichuraiana	Rw0G005850 Rw1G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	320
AciI	CCGC	1 cut(s)	496
AclWI	GGATC	2 cut(s)	56, 69
AcsI	RAATTY	3 cut(s)	179, 284, 341
AfaI	GTAC	1 cut(s)	359
AfeI	AGCGCT	1 cut(s)	417
AgsI	TTSAA	5 cut(s)	130, 352, 400, 461, 550
AhlI	ACTAGT	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	2 cut(s)	604, 636
AluBI	AGCT	4 cut(s)	70, 136, 144, 187
AluI	AGCT	4 cut(s)	70, 136, 144, 187
AlwI	GGATC	2 cut(s)	56, 69
Ama87I	CYCGRG	1 cut(s)	65
Aor51HI	AGCGCT	1 cut(s)	417
ApeKI	GCWGC	2 cut(s)	6, 141
ApoI	RAATTY	3 cut(s)	179, 284, 341
Asp700I	GAANNNNTTC	3 cut(s)	180, 221, 438
AspLEI	GCGC	3 cut(s)	320, 322, 418
AspS9I	GGNCC	2 cut(s)	294, 325
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	294, 325
AxyI	CCTNAGG	1 cut(s)	298
BamHI	GGATCC	1 cut(s)	61
BarI	GAAGNNNNNNTAC	4 cut(s)	402, 405, 434, 437
BbsI	GAAGAC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	4 cut(s)	152, 318, 400, 562
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciVI	GTATCC	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	51
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	1 cut(s)	437
BfoI	RGCGCY	1 cut(s)	419
BfuI	GTATCC	1 cut(s)	553
BisI	GCNGC	2 cut(s)	7, 142
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	2 cut(s)	8, 143
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	2 cut(s)	294, 325
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	294, 325
BmiI	GGNNCC	2 cut(s)	63, 209
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	298
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	51
Bsa29I	ATCGAT	2 cut(s)	153, 516
BsaWI	WCCGGW	2 cut(s)	210, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	379
Bse21I	CCTNAGG	1 cut(s)	298
Bse3DI	GCAATG	1 cut(s)	45
BseCI	ATCGAT	2 cut(s)	153, 516
BseGI	GGATG	2 cut(s)	77, 310
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	379
BsePI	GCGCGC	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	320
BshVI	ATCGAT	2 cut(s)	153, 516
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	4 cut(s)	50, 211, 292, 323
BsmI	GAATGC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	61, 229, 270
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	496
BspDI	ATCGAT	2 cut(s)	153, 516
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	63, 209
BspPI	GGATC	2 cut(s)	56, 69
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	379
BssAI	RCCGGY	1 cut(s)	322
BssHII	GCGCGC	1 cut(s)	318
BssMI	GATC	3 cut(s)	61, 229, 270
Bst4CI	ACNGT	2 cut(s)	97, 126
Bst6I	CTCTTC	2 cut(s)	227, 627
BstC8I	GCNNGC	3 cut(s)	189, 320, 489
BstDEI	CTNAG	2 cut(s)	137, 298
BstF5I	GGATG	2 cut(s)	77, 310
BstFNI	CGCG	1 cut(s)	320
BstH2I	RGCGCY	1 cut(s)	419
BstHHI	GCGC	3 cut(s)	320, 322, 418
BstKTI	GATC	3 cut(s)	64, 232, 273
BstMBI	GATC	3 cut(s)	61, 229, 270
BstSCI	CCNGG	1 cut(s)	49
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
Bsu15I	ATCGAT	2 cut(s)	153, 516
Bsu36I	CCTNAGG	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	553
BsuTUI	ATCGAT	2 cut(s)	153, 516
BtgZI	GCGATG	1 cut(s)	540
BtsCI	GGATG	2 cut(s)	77, 310
Cac8I	GCNNGC	3 cut(s)	189, 320, 489
CfoI	GCGC	3 cut(s)	320, 322, 418
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	294, 325
ClaI	ATCGAT	2 cut(s)	153, 516
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	329, 571
CviJI	RGCY	8 cut(s)	6, 70, 113, 136, 144, 187, 191, 479
CviKI_1	RGCY	8 cut(s)	6, 70, 113, 136, 144, 187, 191, 479
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	137, 298
DpnI	GATC	3 cut(s)	63, 231, 272
DpnII	GATC	3 cut(s)	61, 229, 270
Eam1104I	CTCTTC	2 cut(s)	227, 627
EarI	CTCTTC	2 cut(s)	227, 627
Eco47I	GGWCC	2 cut(s)	294, 325
Eco47III	AGCGCT	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	65
FaeI	CATG	2 cut(s)	332, 574
FaiI	YATR	9 cut(s)	57, 120, 171, 330, 455, 521, 572, 583, 596
FatI	CATG	2 cut(s)	328, 570
Fnu4HI	GCNGC	2 cut(s)	7, 142
FokI	GGATG	2 cut(s)	64, 297
Fsp4HI	GCNGC	2 cut(s)	7, 142
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	3 cut(s)	319, 321, 417
GluI	GCNGC	2 cut(s)	7, 142
HaeII	RGCGCY	1 cut(s)	419
HapII	CCGG	4 cut(s)	50, 211, 292, 323
HhaI	GCGC	3 cut(s)	320, 322, 418
Hin1II	CATG	2 cut(s)	332, 574
Hin6I	GCGC	3 cut(s)	318, 320, 416
HinP1I	GCGC	3 cut(s)	318, 320, 416
HinfI	GANTC	4 cut(s)	217, 378, 428, 550
HpaII	CCGG	4 cut(s)	50, 211, 292, 323
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	4 cut(s)	200, 234, 433, 448
Hpy188III	TCNNGA	4 cut(s)	65, 130, 425, 565
Hpy99I	CGWCG	1 cut(s)	509
HpyCH4III	ACNGT	2 cut(s)	97, 126
HpyCH4IV	ACGT	2 cut(s)	605, 657
HpyCH4V	TGCA	4 cut(s)	38, 77, 487, 652
HpyF3I	CTNAG	2 cut(s)	137, 298
HpySE526I	ACGT	2 cut(s)	605, 657
Hsp92II	CATG	2 cut(s)	332, 574
HspAI	GCGC	3 cut(s)	318, 320, 416
Kzo9I	GATC	3 cut(s)	61, 229, 270
LpnPI	CCDG	6 cut(s)	63, 173, 224, 305, 336, 360
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	2 cut(s)	605, 657
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	3 cut(s)	63, 231, 272
MboI	GATC	3 cut(s)	61, 229, 270
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	6 cut(s)	147, 179, 284, 341, 395, 647
MnlI	CCTC	4 cut(s)	52, 103, 207, 628
MroXI	GAANNNNTTC	3 cut(s)	180, 221, 438
MspA1I	CMGCKG	1 cut(s)	187
MspI	CCGG	4 cut(s)	50, 211, 292, 323
MspR9I	CCNGG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	40
MvnI	CGCG	1 cut(s)	320
NciI	CCSGG	1 cut(s)	51
NdeII	GATC	3 cut(s)	61, 229, 270
NlaIII	CATG	2 cut(s)	332, 574
NlaIV	GGNNCC	2 cut(s)	63, 209
NmuCI	GTSAC	1 cut(s)	82
PauI	GCGCGC	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PctI	GAATGC	1 cut(s)	40
PdmI	GAANNNNTTC	3 cut(s)	180, 221, 438
PfeI	GAWTC	4 cut(s)	217, 378, 428, 550
PkrI	GCNGC	2 cut(s)	8, 143
PspN4I	GGNNCC	2 cut(s)	63, 209
PspPI	GGNCC	2 cut(s)	294, 325
PsrI	GAACNNNNNNTAC	2 cut(s)	110, 142
PsuI	RGATCY	1 cut(s)	61
PteI	GCGCGC	1 cut(s)	318
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SatI	GCNGC	2 cut(s)	7, 142
Sau3AI	GATC	3 cut(s)	61, 229, 270
Sau96I	GGNCC	2 cut(s)	294, 325
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	7 cut(s)	72, 138, 146, 189, 304, 608, 660
SfaNI	GCATC	1 cut(s)	86
SinI	GGWCC	2 cut(s)	294, 325
SpeI	ACTAGT	1 cut(s)	436
Sse9I	AATT	6 cut(s)	147, 179, 284, 341, 395, 647
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	97, 126
TaiI	ACGT	2 cut(s)	608, 660
TaqI	TCGA	5 cut(s)	17, 153, 273, 384, 516
TasI	AATT	6 cut(s)	147, 179, 284, 341, 395, 647
TfiI	GAWTC	4 cut(s)	217, 378, 428, 550
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	6, 141
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	6 cut(s)	135, 158, 345, 370, 540, 612
TspGWI	ACGGA	2 cut(s)	70, 522
VpaK11BI	GGWCC	2 cut(s)	294, 325
XapI	RAATTY	3 cut(s)	179, 284, 341
XmnI	GAANNNNTTC	3 cut(s)	180, 221, 438
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.