Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008217

Physical Location & Seq

Genomic Coordinates Forward (+)

29368821 .. 29373136

Gene Structure 4316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G310300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGCTGCTATTGGTCAAAGAAAGCTAAAACGCCTGGCTATGAGGACCCTGCAGTTCTTGCTGCTGAAACACCCTTTACAGTGAATGAAGTAGAAGCCCTGTATGAGCTTTTTAAGAAACTGAGCAGTTCATTATTTGATGATGGGCTTATCCACAAGGAAGAATTTCAGCTTGCACTCTTCAAAAACAAAGATAAGAGGAATCTTTTTGCTGACAGGATTTTTGACGTATTTGATGTCAAGCGCAATGGGGTTATTGAGTTTGGAGAATTTGTTCGATCATTGGGTGTCTTTCACCCTAATGCACCTGTAGAAGACAAAACTGCATTTGCATTTAGACTCTATGATCTGAGACAAACAGGGTACATTGAACGGGAGGAGTTGAAGGAGATGGTGCTGGCACTTTTGCATGAATCAGAACTTGTACTCTCGGATGATGTGATCGAAGTGATTGTGGATAAGACATATAGTGAAGCAGATAAGAAAGGGGATGGACGTATTGATCAAGAAGAGTGGAGGGAATTTGTGTTGAAGCATCCATCTTTGATAAAGAATATGACTCTACCATATCTAAAGGATATAACATTAGCTTTTCCTAGCTTTGTGATGAGCTCTGAAGTTGAAGATTCAGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

213

Amino Acids

24.48

Weight (kDa)

4.79

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24270 AT5G24270 AT5G24270 AT5G24270 AT5G24270
fragaria_vesca	FvH4_7g31620
malus_domestica	MD01G1219100.v1.1 MD07G1288800.v1.1
prunus_persica	Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1 Prupe.2G310300_v2.0.a1
pyrus_communis	pycom01g22890 pycom07g26140
rosa_chinensis	RchiOBHm_Chr1g0380691
rosa_multiflora	Rmu_sc0001637.1_g000008
rosa_rugosa	Rorug01G0423500 Rorug01G0423600
rosa_samantha	Rh1AG447800 Rh1BG403200 Rh1DG433500 Rh7CG247200
rosa_wichuraiana	Rw0G005850 Rw1G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	164, 269, 521
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	2 cut(s)	365, 426
AgsI	TTSAA	5 cut(s)	184, 371, 385, 532, 623
AjnI	CCWGG	1 cut(s)	34
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	6 cut(s)	26, 109, 172, 590, 600, 612
AluI	AGCT	6 cut(s)	26, 109, 172, 590, 600, 612
Alw21I	GWGCWC	1 cut(s)	614
Alw26I	GTCTC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	6, 62
ApoI	RAATTY	3 cut(s)	164, 269, 521
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
Asp700I	GAANNNNTTC	2 cut(s)	165, 273
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	614
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	4 cut(s)	137, 385, 485, 547
BciT130I	CCWGG	1 cut(s)	36
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	1 cut(s)	597
BfmI	CTRYAG	2 cut(s)	51, 309
BisI	GCNGC	2 cut(s)	7, 63
BlsI	GCNGC	2 cut(s)	8, 64
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	544
BpiI	GAAGAC	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	36
BseGI	GGATG	3 cut(s)	439, 496, 535
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	113, 341
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	614
BsmAI	GTCTC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp143I	GATC	4 cut(s)	278, 346, 441, 502
BspCNI	CTCAG	2 cut(s)	114, 342
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	253
BssMI	GATC	4 cut(s)	278, 346, 441, 502
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	2 cut(s)	185, 504
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	174, 399
BstDEI	CTNAG	2 cut(s)	122, 350
BstF5I	GGATG	3 cut(s)	439, 496, 535
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	4 cut(s)	281, 349, 444, 505
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	4 cut(s)	278, 346, 441, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	2 cut(s)	51, 309
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	321
BtsCI	GGATG	3 cut(s)	439, 496, 535
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	174, 399
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	364, 425
CspCI	CAANNNNNGTGG	2 cut(s)	494, 529
CviAII	CATG	1 cut(s)	410
CviQI	GTAC	2 cut(s)	364, 425
DdeI	CTNAG	2 cut(s)	122, 350
DpnI	GATC	4 cut(s)	280, 348, 443, 504
DpnII	GATC	4 cut(s)	278, 346, 441, 502
Eam1104I	CTCTTC	2 cut(s)	185, 504
EarI	CTCTTC	2 cut(s)	185, 504
Ecl136II	GAGCTC	1 cut(s)	612
Eco24I	GRGCYC	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	612
Eco57I	CTGAAG	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	614
FaeI	CATG	1 cut(s)	413
FatI	CATG	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	2 cut(s)	7, 63
FokI	GGATG	3 cut(s)	446, 503, 522
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	2 cut(s)	7, 63
FspBI	CTAG	1 cut(s)	597
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	2 cut(s)	7, 63
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	413
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	5 cut(s)	202, 339, 413, 559, 626
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	5 cut(s)	351, 418, 433, 616, 631
Hpy188III	TCNNGA	1 cut(s)	506
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	2 cut(s)	228, 496
HpyCH4V	TGCA	6 cut(s)	53, 176, 305, 326, 332, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	2 cut(s)	122, 350
HpySE526I	ACGT	2 cut(s)	228, 496
Hsp92II	CATG	1 cut(s)	413
HspAI	GCGC	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	278, 346, 441, 502
LpnPI	CCDG	8 cut(s)	21, 48, 63, 113, 202, 321, 345, 383
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	2 cut(s)	228, 496
MalI	GATC	4 cut(s)	280, 348, 443, 504
MboI	GATC	4 cut(s)	278, 346, 441, 502
MboII	GAAGA	5 cut(s)	172, 173, 326, 521, 635
MhlI	GDGCHC	1 cut(s)	614
MluCI	AATT	3 cut(s)	164, 269, 521
MlyI	GAGTC	2 cut(s)	333, 553
MnlI	CCTC	4 cut(s)	37, 192, 370, 510
MroXI	GAANNNNTTC	2 cut(s)	165, 273
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	4 cut(s)	278, 346, 441, 502
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	1 cut(s)	48
PdmI	GAANNNNTTC	2 cut(s)	165, 273
PfeI	GAWTC	3 cut(s)	202, 413, 626
PkrI	GCNGC	2 cut(s)	8, 64
PleI	GAGTC	2 cut(s)	333, 553
PpsI	GAGTC	2 cut(s)	333, 553
PpuMI	RGGWCCY	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	614
Psp5II	RGGWCCY	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	55
RsaI	GTAC	2 cut(s)	365, 426
RsaNI	GTAC	2 cut(s)	364, 425
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	614
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	2 cut(s)	7, 63
Sau3AI	GATC	4 cut(s)	278, 346, 441, 502
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	2 cut(s)	333, 553
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	614
SetI	ASST	9 cut(s)	28, 111, 174, 231, 310, 499, 592, 602, 614
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	2 cut(s)	51, 309
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	3 cut(s)	164, 269, 521
SspMI	CTAG	1 cut(s)	597
SstI	GAGCTC	1 cut(s)	614
StyD4I	CCNGG	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	2 cut(s)	231, 499
TaqI	TCGA	2 cut(s)	277, 444
TasI	AATT	3 cut(s)	164, 269, 521
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	3 cut(s)	202, 413, 626
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	2 cut(s)	6, 62
TspDTI	ATGAA	3 cut(s)	102, 120, 426
TspRI	CASTG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	3 cut(s)	164, 269, 521
XmnI	GAANNNNTTC	2 cut(s)	165, 273
XspI	CTAG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.